Wall clock time and date at job start Tue Mar 31 2020 18:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 108.97776 * 2 1 4 4 C 1.54259 * 108.99507 * 241.15422 * 2 1 3 5 5 N 1.44317 * 108.62127 * 160.70635 * 4 2 1 6 6 C 1.46902 * 111.04079 * 219.92294 * 5 4 2 7 7 C 1.52998 * 109.47118 * 165.77660 * 6 5 4 8 8 H 1.08997 * 109.47338 * 54.99585 * 7 6 5 9 9 C 1.47202 * 109.46617 * 294.99625 * 7 6 5 10 10 N 4.91042 * 131.67030 * 325.64666 * 2 1 3 11 11 C 1.52996 * 109.47386 * 175.00141 * 7 6 5 12 12 C 1.50702 * 109.47303 * 184.99606 * 11 7 6 13 13 H 1.07992 * 119.99723 * 359.97438 * 12 11 7 14 14 C 1.37871 * 119.99810 * 179.97438 * 12 11 7 15 15 N 1.31517 * 120.00371 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47015 * 60.00395 * 16 14 12 18 18 H 1.48506 * 109.47061 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47219 * 300.00332 * 16 14 12 20 20 C 1.48196 * 114.19906 * 93.48996 * 5 4 2 21 21 C 1.53926 * 112.77490 * 318.13199 * 20 5 4 22 22 N 1.44266 * 112.54507 * 318.38153 * 21 20 5 23 23 C 1.46905 * 110.99892 * 217.13773 * 22 21 20 24 24 C 1.52999 * 109.46490 * 160.08587 * 23 22 21 25 25 F 1.39900 * 109.47281 * 65.92882 * 24 23 22 26 26 F 1.39906 * 109.46766 * 185.92699 * 24 23 22 27 27 F 1.39897 * 109.47269 * 305.92537 * 24 23 22 28 28 C 1.46138 * 108.99608 * 118.84955 * 2 1 3 29 29 H 1.08997 * 109.47044 * 300.00162 * 1 2 3 30 30 H 1.08998 * 109.47344 * 59.99495 * 1 2 3 31 31 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.60818 * 280.53830 * 4 2 1 33 33 H 1.09008 * 109.60810 * 41.03458 * 4 2 1 34 34 H 1.09002 * 109.46692 * 285.77340 * 6 5 4 35 35 H 1.08996 * 109.47260 * 45.77160 * 6 5 4 36 36 H 1.09001 * 109.46660 * 304.99785 * 11 7 6 37 37 H 1.09003 * 109.47141 * 64.99248 * 11 7 6 38 38 H 0.96999 * 120.00326 * 179.97438 * 15 14 12 39 39 H 1.09003 * 108.82408 * 197.27917 * 20 5 4 40 40 H 1.09004 * 108.82108 * 78.98165 * 20 5 4 41 41 H 1.09001 * 108.87072 * 197.59453 * 21 20 5 42 42 H 1.09003 * 108.87013 * 79.17568 * 21 20 5 43 43 H 1.08994 * 109.46714 * 280.08440 * 23 22 21 44 44 H 1.08994 * 109.47094 * 40.08867 * 23 22 21 45 45 H 1.09000 * 108.93718 * 302.18070 * 28 2 1 46 46 H 1.08997 * 108.93405 * 60.87346 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8845 1.0308 0.0000 4 6 2.0321 -0.7037 -1.2776 5 7 3.4026 -0.3154 -1.5093 6 6 3.6532 -0.0932 -2.9396 7 6 4.9810 0.6464 -3.1158 8 1 5.7751 0.0914 -2.6164 9 6 4.8757 1.9907 -2.5255 10 7 4.7946 3.0282 -2.0698 11 6 5.3032 0.7678 -4.6065 12 6 6.6670 1.3859 -4.7769 13 1 7.2458 1.6646 -3.9089 14 6 7.1757 1.5956 -6.0411 15 7 6.4706 1.2566 -7.0983 16 14 8.8666 2.3611 -6.2524 17 1 9.8841 1.5030 -5.5940 18 1 9.1792 2.4791 -7.6993 19 1 8.8802 3.7101 -5.6318 20 6 4.4029 -1.2445 -0.9328 21 6 4.0212 -1.7314 0.4767 22 7 3.4839 -0.6756 1.3000 23 6 3.9259 -0.8181 2.6937 24 6 3.7762 0.5225 3.4157 25 9 2.4201 0.8532 3.5088 26 9 4.3214 0.4236 4.7003 27 9 4.4504 1.5164 2.6982 28 6 2.0057 -0.6667 1.2103 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9736 -1.7843 -1.1471 33 1 1.4187 -0.4017 -2.1267 34 1 3.7012 -1.0533 -3.4534 35 1 2.8455 0.5047 -3.3614 36 1 5.2935 -0.2223 -5.0621 37 1 4.5560 1.3974 -5.0896 38 1 6.8284 1.4045 -7.9877 39 1 5.3658 -0.7363 -0.8805 40 1 4.4993 -2.1091 -1.5895 41 1 4.9084 -2.1392 0.9611 42 1 3.2762 -2.5221 0.3868 43 1 3.3153 -1.5701 3.1933 44 1 4.9711 -1.1268 2.7136 45 1 1.6016 -0.1500 2.0809 46 1 1.6463 -1.6957 1.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930654993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:21 Heat of formation + Delta-G solvation = -139.321050 kcal Electronic energy + Delta-G solvation = -30191.108564 eV Core-core repulsion = 25699.901249 eV Total energy + Delta-G solvation = -4491.207315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.02500 -48.60682 -48.46413 -40.69120 -38.55120 -36.80672 -35.67355 -35.20037 -33.34521 -31.28218 -29.08524 -28.57309 -26.69019 -26.13402 -24.25764 -23.59520 -23.22195 -21.30033 -20.92815 -19.44762 -19.39455 -18.53036 -18.45014 -18.11091 -17.10707 -16.77551 -16.45688 -16.05860 -15.92231 -15.63784 -15.47659 -15.19635 -14.99744 -14.75065 -14.73341 -14.64831 -14.48987 -14.42210 -14.15833 -13.91349 -13.77400 -13.66830 -13.55593 -13.12606 -13.08609 -12.97494 -12.81716 -12.56429 -12.44877 -12.44141 -12.11345 -12.06414 -11.95034 -11.67590 -11.50649 -11.37681 -11.24113 -10.99016 -10.53178 -9.40458 -8.87164 -8.17793 -6.25737 1.41286 1.43649 1.50419 1.82044 2.14606 2.22848 2.42815 2.51807 2.95009 3.02371 3.12225 3.17703 3.42532 3.48668 3.93553 3.95667 4.06320 4.17171 4.23979 4.29390 4.33326 4.40540 4.46510 4.63086 4.64376 4.70226 4.77400 4.79114 4.84483 4.86596 4.94236 5.00465 5.05172 5.19130 5.31626 5.38007 5.48572 5.51622 5.65162 5.81243 5.91674 6.04256 6.19919 6.34692 6.56387 6.85858 7.01073 7.42633 8.92905 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.003100 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.209703 B = 9030.151559 C = 9928.897630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.047 0.953 4 C 0.077 3.923 5 N -0.562 5.562 6 C 0.081 3.919 7 C 0.023 3.977 8 H 0.113 0.887 9 C 0.268 3.732 10 N -0.519 5.519 11 C 0.039 3.961 12 C -0.539 4.539 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.946 3.054 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.283 1.283 20 C 0.063 3.937 21 C 0.064 3.936 22 N -0.542 5.542 23 C 0.019 3.981 24 C 0.449 3.551 25 F -0.190 7.190 26 F -0.189 7.189 27 F -0.192 7.192 28 C 0.052 3.948 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.036 0.964 37 H -0.001 1.001 38 H 0.264 0.736 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 -14.067 20.266 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.065 0.935 4 C -0.051 4.051 5 N -0.286 5.286 6 C -0.048 4.048 7 C 0.001 3.999 8 H 0.131 0.869 9 C -0.048 4.048 10 N -0.197 5.197 11 C 0.001 3.999 12 C -0.577 4.577 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.772 3.228 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.209 1.209 20 C -0.064 4.064 21 C -0.064 4.064 22 N -0.266 5.266 23 C -0.111 4.111 24 C 0.395 3.605 25 F -0.172 7.172 26 F -0.170 7.170 27 F -0.173 7.173 28 C -0.075 4.075 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.154 0.846 45 H 0.098 0.902 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.445 -11.637 20.842 26.056 hybrid contribution 0.636 -0.426 -0.688 1.029 sum -9.810 -12.063 20.154 25.455 Atomic orbital electron populations 1.21762 0.93454 1.02586 1.01923 1.20080 0.95595 0.99989 0.94745 0.93470 1.21822 0.87831 0.98040 0.97403 1.60245 1.03876 1.50947 1.13547 1.22086 0.95039 0.99403 0.88271 1.19191 0.99918 0.83984 0.96811 0.86913 1.29368 0.90345 0.94735 0.90353 1.80974 1.11684 1.14020 1.12992 1.18979 0.94999 0.97472 0.88491 1.21517 1.03122 1.40889 0.92148 0.93044 1.25678 1.00899 0.96030 0.95956 1.70020 1.39098 1.48804 0.98390 0.85788 0.80974 0.78929 0.77127 1.18639 1.20630 1.20918 1.22573 0.95130 0.94067 0.94640 1.21987 1.01001 0.90834 0.92606 1.61022 1.10440 1.49235 1.05904 1.23371 1.06927 0.90295 0.90478 1.21080 0.72987 0.89443 0.77036 1.93067 1.34039 1.94126 1.95966 1.93171 1.85951 1.96437 1.41468 1.93208 1.80396 1.65554 1.78172 1.21499 0.85688 1.00783 0.99496 0.92587 0.92725 0.91113 0.92649 0.91460 0.91269 0.91120 0.94580 0.98292 0.92714 0.91968 0.92509 0.88462 0.92127 0.87311 0.84622 0.90238 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.01 71.98 0.65 -1.53 16 2 C -0.08 -1.69 2.60 -12.48 -0.03 -1.72 16 3 H 0.05 1.35 8.12 -2.39 -0.02 1.33 16 4 C 0.08 1.53 4.77 87.21 0.42 1.95 16 5 N -0.56 -13.84 3.84 -894.89 -3.44 -17.27 16 6 C 0.08 2.28 4.23 86.30 0.37 2.65 16 7 C 0.02 0.84 2.13 -12.60 -0.03 0.81 16 8 H 0.11 3.84 6.57 -2.39 -0.02 3.83 16 9 C 0.27 11.65 13.67 89.44 1.22 12.87 16 10 N -0.52 -24.95 18.54 20.01 0.37 -24.58 16 11 C 0.04 1.83 4.42 29.85 0.13 1.96 16 12 C -0.54 -28.90 8.60 25.60 0.22 -28.68 16 13 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 14 C 0.01 0.74 5.46 84.65 0.46 1.20 16 15 N -0.92 -53.22 13.29 21.45 0.28 -52.93 16 16 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 20 C 0.06 1.27 5.23 86.37 0.45 1.72 16 21 C 0.06 0.90 5.13 87.11 0.45 1.35 16 22 N -0.54 -9.57 4.14 -910.80 -3.77 -13.34 16 23 C 0.02 0.25 5.01 86.30 0.43 0.68 16 24 C 0.45 8.95 3.28 71.98 0.24 9.19 16 25 F -0.19 -4.08 14.64 44.97 0.66 -3.42 16 26 F -0.19 -3.64 17.32 44.97 0.78 -2.86 16 27 F -0.19 -5.37 17.13 44.97 0.77 -4.60 16 28 C 0.05 0.85 3.95 83.96 0.33 1.19 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.88 6.96 -2.39 -0.02 0.87 16 33 H 0.07 1.37 7.17 -2.38 -0.02 1.35 16 34 H 0.07 1.71 7.98 -2.39 -0.02 1.69 16 35 H 0.07 2.10 7.65 -2.39 -0.02 2.08 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.06 1.47 6.90 -2.39 -0.02 1.46 16 40 H 0.06 0.97 7.93 -2.39 -0.02 0.96 16 41 H 0.10 0.96 7.20 -2.39 -0.02 0.94 16 42 H 0.06 0.67 6.54 -2.39 -0.02 0.65 16 43 H 0.11 0.82 7.98 -2.39 -0.02 0.80 16 44 H 0.14 1.28 7.45 -2.39 -0.02 1.27 16 45 H 0.08 1.39 5.17 -2.39 -0.01 1.38 16 46 H 0.06 0.73 7.37 -2.39 -0.02 0.71 16 Total: -1.00 -69.00 374.80 3.97 -65.03 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 0.99 Total: 4.51 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.31 Total: 3.64 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -6.56 Total: -108.13 kcal Atomic # 9 Polarization: -13.09 SS G_CDS: 2.21 Total: -10.88 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.00 3.97 -65.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930654993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.293 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds