Wall clock time and date at job start Tue Mar 31 2020 18:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 108.86096 * 2 1 4 4 C 1.50798 * 108.95781 * 118.70991 * 2 1 3 5 5 N 1.47906 * 108.49754 * 213.22671 * 4 2 1 6 6 C 1.46899 * 110.99834 * 153.77712 * 5 4 2 7 7 C 1.52999 * 109.46950 * 194.24320 * 6 5 4 8 8 H 1.08998 * 109.47343 * 300.84206 * 7 6 5 9 9 C 1.47201 * 109.46900 * 60.84575 * 7 6 5 10 10 N 5.03481 * 117.63228 * 43.66486 * 2 1 3 11 11 C 1.53003 * 109.46913 * 180.84038 * 7 6 5 12 12 C 1.50703 * 109.47058 * 175.00410 * 11 7 6 13 13 H 1.08005 * 119.99808 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00277 * 180.02562 * 12 11 7 15 15 N 1.31521 * 119.99687 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00334 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46758 * 89.99573 * 16 14 12 18 18 H 1.48491 * 109.47185 * 209.99723 * 16 14 12 19 19 H 1.48501 * 109.46788 * 330.00041 * 16 14 12 20 20 C 1.40007 * 114.06920 * 280.06889 * 5 4 2 21 21 C 1.54204 * 112.07990 * 61.80962 * 20 5 4 22 22 N 1.44574 * 108.85447 * 281.18843 * 21 20 5 23 23 C 1.46895 * 111.00050 * 220.35281 * 22 21 20 24 24 C 1.53003 * 109.47128 * 163.48775 * 23 22 21 25 25 F 1.39902 * 109.47027 * 65.88094 * 24 23 22 26 26 F 1.39896 * 109.47402 * 185.88422 * 24 23 22 27 27 F 1.39898 * 109.46951 * 305.88477 * 24 23 22 28 28 C 1.48066 * 113.86130 * 94.22452 * 22 21 20 29 29 H 1.08995 * 109.47165 * 301.28498 * 1 2 3 30 30 H 1.08995 * 109.47106 * 61.29160 * 1 2 3 31 31 H 1.09008 * 109.46634 * 181.28553 * 1 2 3 32 32 H 1.08998 * 109.62816 * 93.52455 * 4 2 1 33 33 H 1.09000 * 109.63315 * 332.93140 * 4 2 1 34 34 H 1.08995 * 109.47163 * 314.24496 * 6 5 4 35 35 H 1.08998 * 109.47115 * 74.24331 * 6 5 4 36 36 H 1.09000 * 109.47610 * 295.00353 * 11 7 6 37 37 H 1.08997 * 109.47146 * 55.00363 * 11 7 6 38 38 H 0.96996 * 119.99829 * 180.02562 * 15 14 12 39 39 H 1.08997 * 108.96436 * 301.13638 * 20 5 4 40 40 H 1.09006 * 108.88930 * 182.43273 * 20 5 4 41 41 H 1.08996 * 109.57362 * 41.00337 * 21 20 5 42 42 H 1.09007 * 109.57262 * 161.37993 * 21 20 5 43 43 H 1.09006 * 109.47076 * 283.48324 * 23 22 21 44 44 H 1.08998 * 109.47778 * 43.48499 * 23 22 21 45 45 H 1.08998 * 108.88102 * 197.54852 * 28 22 21 46 46 H 1.09000 * 108.80144 * 79.03061 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8824 1.0315 0.0000 4 6 2.0200 -0.6851 1.2509 5 7 3.2821 -0.0411 1.6750 6 6 3.4875 -0.1877 3.1221 7 6 4.5878 0.7714 3.5808 8 1 5.5108 0.5479 3.0459 9 6 4.1799 2.1572 3.2980 10 7 3.8652 3.2267 3.0797 11 6 4.8162 0.6037 5.0844 12 6 5.9813 1.4578 5.5137 13 1 6.5066 2.0596 4.7868 14 6 6.3774 1.4701 6.8343 15 7 5.7381 0.7369 7.7194 16 14 7.8220 2.5281 7.3664 17 1 7.3318 3.8737 7.7591 18 1 8.5020 1.8919 8.5230 19 1 8.7805 2.6599 6.2398 20 6 4.4089 -0.4686 0.9624 21 6 4.3023 -0.1422 -0.5409 22 7 3.4447 -1.1204 -1.1717 23 6 3.9733 -1.5156 -2.4840 24 6 3.3010 -2.8140 -2.9348 25 9 1.9398 -2.5810 -3.1584 26 9 3.8980 -3.2621 -4.1179 27 9 3.4503 -3.7861 -1.9399 28 6 2.0293 -0.6982 -1.2751 29 1 -0.3633 0.5336 0.8782 30 1 -0.3633 0.4936 -0.9013 31 1 -0.3633 -1.0275 0.0231 32 1 2.1986 -1.7403 1.0443 33 1 1.2744 -0.5844 2.0395 34 1 2.5606 0.0454 3.6461 35 1 3.7829 -1.2129 3.3451 36 1 3.9212 0.9122 5.6246 37 1 5.0314 -0.4418 5.3048 38 1 6.0165 0.7458 8.6485 39 1 4.5170 -1.5464 1.0840 40 1 5.2919 0.0237 1.3700 41 1 3.8770 0.8531 -0.6692 42 1 5.2931 -0.1791 -0.9938 43 1 3.7681 -0.7291 -3.2103 44 1 5.0498 -1.6704 -2.4106 45 1 1.4117 -1.5769 -1.4610 46 1 1.9279 -0.0118 -2.1157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930654994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:24 Heat of formation + Delta-G solvation = -122.148642 kcal Electronic energy + Delta-G solvation = -29856.811311 eV Core-core repulsion = 25366.348647 eV Total energy + Delta-G solvation = -4490.462664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.32515 -47.90565 -47.72311 -39.95856 -37.37679 -35.65265 -34.55793 -33.51580 -31.76074 -30.36244 -28.19358 -27.15426 -25.99973 -24.98050 -23.29750 -22.46247 -21.73391 -20.76517 -19.78951 -18.80441 -18.70429 -17.71117 -16.71857 -16.50463 -16.29880 -15.88661 -15.47740 -15.03204 -14.77702 -14.72464 -14.47417 -14.31145 -14.25348 -13.96356 -13.93743 -13.86581 -13.32494 -13.29199 -12.96598 -12.93287 -12.72541 -12.37989 -12.32438 -11.96727 -11.93220 -11.59717 -11.41643 -11.30834 -11.20202 -11.08553 -11.03136 -10.89213 -10.63264 -10.59988 -10.49103 -10.08879 -9.52225 -9.21856 -8.71791 -8.45754 -8.04075 -6.09770 -4.12908 2.44399 3.15843 3.29457 3.36133 3.38957 3.54119 3.74211 3.74704 3.84802 3.99226 4.13190 4.40958 4.55441 4.62113 4.76890 4.83171 4.93477 4.98594 5.02435 5.13907 5.25289 5.28448 5.37373 5.49690 5.52487 5.59792 5.63837 5.65648 5.74053 5.91730 5.94313 5.99006 6.04714 6.13463 6.23971 6.39789 6.50452 6.53516 6.71294 7.25426 7.43119 7.51552 7.56936 7.85404 8.23119 8.60219 8.91837 9.52558 11.01121 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.002618 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.297047 B =10694.618948 C =11290.590965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.074 3.926 5 N -0.557 5.557 6 C 0.069 3.931 7 C 0.008 3.992 8 H 0.099 0.901 9 C 0.259 3.741 10 N -0.482 5.482 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.072 3.928 21 C 0.064 3.936 22 N -0.546 5.546 23 C 0.015 3.985 24 C 0.455 3.545 25 F -0.185 7.185 26 F -0.187 7.187 27 F -0.171 7.171 28 C 0.055 3.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.083 0.917 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 -8.764 -21.931 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.053 4.053 5 N -0.281 5.281 6 C -0.059 4.059 7 C -0.014 4.014 8 H 0.117 0.883 9 C -0.058 4.058 10 N -0.159 5.159 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.058 4.058 21 C -0.063 4.063 22 N -0.271 5.271 23 C -0.115 4.115 24 C 0.401 3.599 25 F -0.167 7.167 26 F -0.168 7.168 27 F -0.153 7.153 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.102 0.898 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.404 -7.144 -21.897 24.193 hybrid contribution 0.937 -0.174 0.027 0.953 sum -6.467 -7.318 -21.870 23.951 Atomic orbital electron populations 1.21822 0.94402 1.01887 1.02023 1.21023 0.95590 1.00858 0.93618 0.89982 1.21817 0.90908 0.96513 0.96044 1.59196 1.03080 1.61017 1.04805 1.22200 0.99478 0.98130 0.86048 1.19297 0.97431 0.82499 1.02153 0.88328 1.28824 0.91843 0.94529 0.90618 1.80975 1.10469 1.12791 1.11648 1.19163 0.97858 0.98545 0.85142 1.21135 1.14807 1.26557 0.93885 0.92554 1.24951 0.96827 0.95473 0.96705 1.69939 1.40614 1.39787 1.02664 0.86602 0.82627 0.80578 0.78328 1.20663 1.21117 1.19754 1.21029 0.93799 0.98878 0.92137 1.22044 0.95719 0.93588 0.94973 1.60604 1.03227 1.45078 1.18164 1.23296 1.01512 0.92956 0.93729 1.20581 0.76927 0.87649 0.74789 1.93146 1.34396 1.94524 1.94602 1.93182 1.83617 1.90860 1.49190 1.93215 1.95309 1.65614 1.61143 1.22852 0.87155 0.99684 0.97429 0.91961 0.92817 0.92558 0.93135 0.90846 0.90243 0.92798 0.95595 0.94452 0.92802 0.94648 0.89930 0.92175 0.90540 0.90301 0.86224 0.89850 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.81 37.16 0.33 -0.90 16 2 C -0.09 -0.91 2.25 -91.36 -0.21 -1.11 16 3 H 0.08 0.97 7.23 -51.93 -0.38 0.59 16 4 C 0.07 0.82 4.85 -4.37 -0.02 0.80 16 5 N -0.56 -7.06 3.67 -239.77 -0.88 -7.94 16 6 C 0.07 1.00 4.37 -3.83 -0.02 0.98 16 7 C 0.01 0.15 2.05 -93.41 -0.19 -0.05 16 8 H 0.10 1.64 6.33 -51.93 -0.33 1.31 16 9 C 0.26 5.24 13.56 -20.76 -0.28 4.96 16 10 N -0.48 -10.65 18.54 42.15 0.78 -9.87 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 12 C -0.53 -13.81 8.60 -34.44 -0.30 -14.11 16 13 H 0.06 1.47 7.59 -52.48 -0.40 1.08 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.07 0.82 4.92 -6.75 -0.03 0.79 16 21 C 0.06 0.61 5.45 -4.44 -0.02 0.58 16 22 N -0.55 -4.90 3.74 -234.30 -0.88 -5.78 16 23 C 0.02 0.11 5.01 -3.82 -0.02 0.09 16 24 C 0.46 3.93 3.21 37.16 0.12 4.05 16 25 F -0.19 -1.73 14.56 2.25 0.03 -1.69 16 26 F -0.19 -1.65 17.32 2.25 0.04 -1.61 16 27 F -0.17 -1.81 17.13 2.25 0.04 -1.77 16 28 C 0.06 0.50 3.98 -2.82 -0.01 0.49 16 29 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 33 H 0.07 0.81 7.15 -51.93 -0.37 0.44 16 34 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 35 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.08 0.99 5.92 -51.93 -0.31 0.68 16 41 H 0.06 0.64 6.93 -51.93 -0.36 0.28 16 42 H 0.08 0.58 7.29 -51.93 -0.38 0.20 16 43 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 44 H 0.12 0.66 7.58 -51.93 -0.39 0.27 16 45 H 0.08 0.78 6.03 -51.93 -0.31 0.47 16 46 H 0.04 0.32 7.88 -51.93 -0.41 -0.09 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -29.84 374.28 -7.31 -37.15 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.92 Total: -4.42 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.87 Total: -1.22 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.24 Total: -48.20 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.84 -7.31 -37.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930654994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.998 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds