Wall clock time and date at job start Tue Mar 31 2020 18:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 108.86096 * 2 1 4 4 C 1.50798 * 108.95781 * 118.70991 * 2 1 3 5 5 N 1.47906 * 108.49754 * 213.22671 * 4 2 1 6 6 C 1.46899 * 110.99834 * 153.77712 * 5 4 2 7 7 C 1.52999 * 109.46950 * 194.24320 * 6 5 4 8 8 H 1.08998 * 109.47343 * 300.84206 * 7 6 5 9 9 C 1.47201 * 109.46900 * 60.84575 * 7 6 5 10 10 N 5.03481 * 117.63228 * 43.66486 * 2 1 3 11 11 C 1.53003 * 109.46913 * 180.84038 * 7 6 5 12 12 C 1.50703 * 109.47058 * 175.00410 * 11 7 6 13 13 H 1.08005 * 119.99808 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00277 * 180.02562 * 12 11 7 15 15 N 1.31521 * 119.99687 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00334 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46758 * 89.99573 * 16 14 12 18 18 H 1.48491 * 109.47185 * 209.99723 * 16 14 12 19 19 H 1.48501 * 109.46788 * 330.00041 * 16 14 12 20 20 C 1.40007 * 114.06920 * 280.06889 * 5 4 2 21 21 C 1.54204 * 112.07990 * 61.80962 * 20 5 4 22 22 N 1.44574 * 108.85447 * 281.18843 * 21 20 5 23 23 C 1.46895 * 111.00050 * 220.35281 * 22 21 20 24 24 C 1.53003 * 109.47128 * 163.48775 * 23 22 21 25 25 F 1.39902 * 109.47027 * 65.88094 * 24 23 22 26 26 F 1.39896 * 109.47402 * 185.88422 * 24 23 22 27 27 F 1.39898 * 109.46951 * 305.88477 * 24 23 22 28 28 C 1.48066 * 113.86130 * 94.22452 * 22 21 20 29 29 H 1.08995 * 109.47165 * 301.28498 * 1 2 3 30 30 H 1.08995 * 109.47106 * 61.29160 * 1 2 3 31 31 H 1.09008 * 109.46634 * 181.28553 * 1 2 3 32 32 H 1.08998 * 109.62816 * 93.52455 * 4 2 1 33 33 H 1.09000 * 109.63315 * 332.93140 * 4 2 1 34 34 H 1.08995 * 109.47163 * 314.24496 * 6 5 4 35 35 H 1.08998 * 109.47115 * 74.24331 * 6 5 4 36 36 H 1.09000 * 109.47610 * 295.00353 * 11 7 6 37 37 H 1.08997 * 109.47146 * 55.00363 * 11 7 6 38 38 H 0.96996 * 119.99829 * 180.02562 * 15 14 12 39 39 H 1.08997 * 108.96436 * 301.13638 * 20 5 4 40 40 H 1.09006 * 108.88930 * 182.43273 * 20 5 4 41 41 H 1.08996 * 109.57362 * 41.00337 * 21 20 5 42 42 H 1.09007 * 109.57262 * 161.37993 * 21 20 5 43 43 H 1.09006 * 109.47076 * 283.48324 * 23 22 21 44 44 H 1.08998 * 109.47778 * 43.48499 * 23 22 21 45 45 H 1.08998 * 108.88102 * 197.54852 * 28 22 21 46 46 H 1.09000 * 108.80144 * 79.03061 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8824 1.0315 0.0000 4 6 2.0200 -0.6851 1.2509 5 7 3.2821 -0.0411 1.6750 6 6 3.4875 -0.1877 3.1221 7 6 4.5878 0.7714 3.5808 8 1 5.5108 0.5479 3.0459 9 6 4.1799 2.1572 3.2980 10 7 3.8652 3.2267 3.0797 11 6 4.8162 0.6037 5.0844 12 6 5.9813 1.4578 5.5137 13 1 6.5066 2.0596 4.7868 14 6 6.3774 1.4701 6.8343 15 7 5.7381 0.7369 7.7194 16 14 7.8220 2.5281 7.3664 17 1 7.3318 3.8737 7.7591 18 1 8.5020 1.8919 8.5230 19 1 8.7805 2.6599 6.2398 20 6 4.4089 -0.4686 0.9624 21 6 4.3023 -0.1422 -0.5409 22 7 3.4447 -1.1204 -1.1717 23 6 3.9733 -1.5156 -2.4840 24 6 3.3010 -2.8140 -2.9348 25 9 1.9398 -2.5810 -3.1584 26 9 3.8980 -3.2621 -4.1179 27 9 3.4503 -3.7861 -1.9399 28 6 2.0293 -0.6982 -1.2751 29 1 -0.3633 0.5336 0.8782 30 1 -0.3633 0.4936 -0.9013 31 1 -0.3633 -1.0275 0.0231 32 1 2.1986 -1.7403 1.0443 33 1 1.2744 -0.5844 2.0395 34 1 2.5606 0.0454 3.6461 35 1 3.7829 -1.2129 3.3451 36 1 3.9212 0.9122 5.6246 37 1 5.0314 -0.4418 5.3048 38 1 6.0165 0.7458 8.6485 39 1 4.5170 -1.5464 1.0840 40 1 5.2919 0.0237 1.3700 41 1 3.8770 0.8531 -0.6692 42 1 5.2931 -0.1791 -0.9938 43 1 3.7681 -0.7291 -3.2103 44 1 5.0498 -1.6704 -2.4106 45 1 1.4117 -1.5769 -1.4610 46 1 1.9279 -0.0118 -2.1157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930654994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:23 Heat of formation + Delta-G solvation = -139.086132 kcal Electronic energy + Delta-G solvation = -29857.545775 eV Core-core repulsion = 25366.348647 eV Total energy + Delta-G solvation = -4491.197129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.01222 -48.58260 -48.44646 -40.84134 -38.56501 -36.90691 -35.62475 -35.19040 -33.39042 -31.21853 -29.08377 -28.53808 -26.85299 -26.15440 -24.33435 -23.61980 -23.14015 -21.70570 -20.59300 -19.49138 -19.38876 -18.56121 -18.32852 -18.06921 -17.13706 -16.85547 -16.55716 -16.30259 -15.89719 -15.53649 -15.44644 -15.15883 -15.05420 -14.95146 -14.67936 -14.64733 -14.63026 -14.24075 -14.18187 -13.92775 -13.83629 -13.67023 -13.50484 -13.18184 -13.06036 -12.98545 -12.80436 -12.58701 -12.49471 -12.33972 -12.16996 -12.10188 -12.03616 -11.71192 -11.57813 -11.42104 -11.26019 -11.01167 -10.53742 -9.39664 -9.04319 -8.17645 -6.25773 1.41253 1.43530 1.52451 1.80807 2.11893 2.19703 2.42870 2.49707 2.92611 2.98743 3.13542 3.18073 3.40197 3.46989 3.79323 3.97194 4.04176 4.09740 4.28456 4.29408 4.35021 4.40527 4.42699 4.51621 4.65676 4.70973 4.75478 4.78842 4.84334 4.88476 4.93323 5.02717 5.07573 5.15182 5.25512 5.31517 5.44605 5.49318 5.64343 5.81465 5.84368 5.98508 6.17323 6.28922 6.59942 6.86012 6.98392 7.42788 8.93292 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.002618 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.297047 B =10694.618948 C =11290.590965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.064 0.936 4 C 0.078 3.922 5 N -0.563 5.563 6 C 0.079 3.921 7 C 0.021 3.979 8 H 0.117 0.883 9 C 0.270 3.730 10 N -0.514 5.514 11 C 0.038 3.962 12 C -0.537 4.537 13 H 0.055 0.945 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.947 3.053 17 H -0.285 1.285 18 H -0.280 1.280 19 H -0.263 1.263 20 C 0.068 3.932 21 C 0.072 3.928 22 N -0.556 5.556 23 C 0.018 3.982 24 C 0.454 3.546 25 F -0.190 7.190 26 F -0.188 7.188 27 F -0.185 7.185 28 C 0.060 3.940 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.000 1.000 37 H 0.033 0.967 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -9.007 -23.545 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.049 4.049 5 N -0.287 5.287 6 C -0.049 4.049 7 C -0.001 4.001 8 H 0.135 0.865 9 C -0.046 4.046 10 N -0.192 5.192 11 C -0.001 4.001 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.773 3.227 17 H -0.211 1.211 18 H -0.205 1.205 19 H -0.187 1.187 20 C -0.062 4.062 21 C -0.055 4.055 22 N -0.281 5.281 23 C -0.111 4.111 24 C 0.400 3.600 25 F -0.172 7.172 26 F -0.170 7.170 27 F -0.166 7.166 28 C -0.067 4.067 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.018 0.982 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.157 0.843 45 H 0.099 0.901 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.766 -7.393 -23.535 25.579 hybrid contribution 0.710 -0.128 0.504 0.880 sum -6.056 -7.521 -23.031 24.973 Atomic orbital electron populations 1.21785 0.93392 1.02379 1.02186 1.20948 0.96428 0.99647 0.93569 0.91793 1.21820 0.90087 0.96383 0.96563 1.59191 1.04161 1.61680 1.03688 1.22014 0.97918 0.97513 0.87479 1.19222 0.99646 0.82071 0.99179 0.86541 1.29242 0.90892 0.94757 0.89756 1.80974 1.11775 1.13793 1.12643 1.18979 0.95543 0.97484 0.88062 1.21553 1.15497 1.26492 0.93951 0.92691 1.25713 0.99281 0.96721 0.97079 1.70036 1.42133 1.41296 1.02942 0.85710 0.80026 0.78656 0.78303 1.21088 1.20493 1.18671 1.21098 0.92979 0.98601 0.93487 1.21943 0.96947 0.92955 0.93696 1.60496 1.03122 1.44915 1.19543 1.23387 1.02270 0.92342 0.93089 1.20837 0.76796 0.87944 0.74467 1.93136 1.34943 1.94516 1.94612 1.93178 1.83587 1.90956 1.49252 1.93189 1.95363 1.66354 1.61727 1.22782 0.87336 0.99573 0.96964 0.92590 0.91929 0.91836 0.93272 0.91021 0.90682 0.91641 0.98162 0.94844 0.92764 0.94835 0.90510 0.93275 0.88255 0.88446 0.84342 0.90054 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.81 71.98 0.63 -1.58 16 2 C -0.09 -1.62 2.25 -11.27 -0.03 -1.64 16 3 H 0.06 1.45 7.23 -2.39 -0.02 1.44 16 4 C 0.08 1.65 4.85 85.39 0.41 2.07 16 5 N -0.56 -13.66 3.67 -912.48 -3.35 -17.01 16 6 C 0.08 2.21 4.37 86.30 0.38 2.59 16 7 C 0.02 0.72 2.05 -12.60 -0.03 0.70 16 8 H 0.12 3.71 6.33 -2.39 -0.02 3.70 16 9 C 0.27 10.82 13.56 89.44 1.21 12.03 16 10 N -0.51 -22.63 18.54 20.01 0.37 -22.25 16 11 C 0.04 1.74 4.42 29.85 0.13 1.87 16 12 C -0.54 -28.11 8.60 25.60 0.22 -27.89 16 13 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 14 C 0.01 0.59 5.46 84.65 0.46 1.06 16 15 N -0.92 -52.91 13.29 21.45 0.28 -52.63 16 16 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 20 C 0.07 1.45 4.92 87.96 0.43 1.88 16 21 C 0.07 1.21 5.45 87.15 0.47 1.68 16 22 N -0.56 -8.74 3.74 -895.20 -3.35 -12.09 16 23 C 0.02 0.21 5.01 86.31 0.43 0.64 16 24 C 0.45 6.96 3.21 71.98 0.23 7.19 16 25 F -0.19 -3.23 14.56 44.97 0.65 -2.58 16 26 F -0.19 -2.97 17.32 44.97 0.78 -2.19 16 27 F -0.18 -3.62 17.13 44.97 0.77 -2.85 16 28 C 0.06 0.97 3.98 86.31 0.34 1.32 16 29 H 0.06 0.95 8.08 -2.39 -0.02 0.94 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.05 1.07 7.57 -2.39 -0.02 1.05 16 33 H 0.07 1.53 7.15 -2.39 -0.02 1.51 16 34 H 0.07 2.16 7.70 -2.39 -0.02 2.14 16 35 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.03 0.74 8.07 -2.39 -0.02 0.72 16 40 H 0.08 1.70 5.92 -2.38 -0.01 1.69 16 41 H 0.05 0.95 6.93 -2.39 -0.02 0.93 16 42 H 0.10 1.20 7.29 -2.38 -0.02 1.18 16 43 H 0.10 0.80 7.92 -2.38 -0.02 0.78 16 44 H 0.14 1.06 7.58 -2.39 -0.02 1.05 16 45 H 0.08 1.38 6.03 -2.39 -0.01 1.36 16 46 H 0.05 0.67 7.88 -2.39 -0.02 0.66 16 Total: -1.00 -63.31 374.28 4.50 -58.81 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.99 Total: 5.76 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 5.32 Total: 1.91 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -6.04 Total: -103.98 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 2.20 Total: -7.62 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -63.31 4.50 -58.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930654994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.272 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds