Wall clock time and date at job start Tue Mar 31 2020 18:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.50986 * 2 1 4 4 C 1.53094 * 109.50547 * 239.91621 * 2 1 3 5 5 N 1.47022 * 109.25875 * 183.21640 * 4 2 1 6 6 C 1.46904 * 110.99794 * 182.38921 * 5 4 2 7 7 C 1.52998 * 109.46661 * 170.00056 * 6 5 4 8 8 N 1.46505 * 109.47308 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00023 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00418 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99884 * 180.02562 * 9 8 7 12 12 C 1.39954 * 120.00142 * 174.85392 * 11 9 8 13 13 C 1.39285 * 119.94610 * 325.52219 * 12 11 9 14 14 C 1.38492 * 120.43179 * 179.76474 * 13 12 11 15 15 C 1.37682 * 120.31577 * 0.51404 * 14 13 12 16 16 C 1.40740 * 119.88638 * 359.74282 * 15 14 13 17 17 C 1.41412 * 120.20988 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00291 * 25.14805 * 17 16 15 19 19 C 1.39939 * 119.99775 * 205.14109 * 17 16 15 20 20 N 1.30826 * 119.99891 * 16.78725 * 19 17 16 21 21 Si 1.86797 * 119.99744 * 196.78659 * 19 17 16 22 22 H 1.48496 * 109.47537 * 60.00283 * 21 19 17 23 23 H 1.48503 * 109.47064 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47213 * 299.99849 * 21 19 17 25 25 C 1.38235 * 119.94691 * 145.79999 * 12 11 9 26 26 C 1.47018 * 110.75057 * 58.61471 * 5 4 2 27 27 C 1.53098 * 109.25663 * 301.38633 * 26 5 4 28 28 O 1.43011 * 109.25972 * 56.85165 * 27 26 5 29 29 H 1.08995 * 109.47719 * 180.08609 * 1 2 3 30 30 H 1.08999 * 109.47159 * 300.08479 * 1 2 3 31 31 H 1.09000 * 109.47091 * 60.08398 * 1 2 3 32 32 H 1.09001 * 109.51395 * 63.28057 * 4 2 1 33 33 H 1.09007 * 109.50987 * 303.15111 * 4 2 1 34 34 H 1.08993 * 109.47207 * 289.99720 * 6 5 4 35 35 H 1.08993 * 109.47008 * 50.00335 * 6 5 4 36 36 H 1.09002 * 109.47389 * 300.00479 * 7 6 5 37 37 H 1.09006 * 109.47338 * 60.00196 * 7 6 5 38 38 H 0.96995 * 119.99159 * 0.02562 * 8 7 6 39 39 H 0.97001 * 119.99886 * 354.84523 * 11 9 8 40 40 H 1.08001 * 119.78285 * 0.02562 * 13 12 11 41 41 H 1.07991 * 119.84276 * 180.23001 * 14 13 12 42 42 H 1.07994 * 120.05975 * 179.72220 * 15 14 13 43 43 H 0.97002 * 119.99587 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.16335 * 359.97438 * 25 12 11 45 45 H 1.09004 * 109.50386 * 61.32130 * 26 5 4 46 46 H 1.08998 * 109.50383 * 181.44685 * 26 5 4 47 47 H 1.08999 * 109.50496 * 296.91510 * 27 26 5 48 48 H 1.08998 * 109.54038 * 176.80584 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7234 -1.2487 5 7 3.5093 -0.7879 -1.2048 6 6 4.0445 -1.4259 -2.4150 7 6 5.5643 -1.2538 -2.4525 8 7 6.0982 -1.8895 -3.6596 9 6 7.4231 -1.8631 -3.9054 10 8 8.1752 -1.3113 -3.1256 11 7 7.9141 -2.4474 -5.0162 12 6 9.2734 -2.3280 -5.3272 13 6 9.9566 -1.1539 -5.0193 14 6 11.3029 -1.0267 -5.3181 15 6 11.9786 -2.0567 -5.9331 16 6 11.3002 -3.2470 -6.2550 17 6 11.9876 -4.3095 -6.8862 18 1 13.0565 -4.4071 -6.7674 19 6 11.2827 -5.2344 -7.6645 20 7 10.0753 -4.9526 -8.0820 21 14 12.0658 -6.8715 -8.1073 22 1 12.3867 -7.6189 -6.8649 23 1 11.1204 -7.6653 -8.9327 24 1 13.3130 -6.6316 -8.8769 25 6 9.9345 -3.3733 -5.9447 26 6 3.9639 -1.4884 0.0052 27 6 3.4334 -0.7573 1.2413 28 8 2.0075 -0.6768 1.1659 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8907 32 1 1.7273 -0.1786 -2.1391 33 1 1.6331 -1.7338 -1.2767 34 1 3.7994 -2.4879 -2.4046 35 1 3.6042 -0.9599 -3.2964 36 1 5.8096 -0.1918 -2.4627 37 1 6.0047 -1.7198 -1.5709 38 1 5.4980 -2.3287 -4.2822 39 1 7.3254 -2.9509 -5.6001 40 1 9.4340 -0.3390 -4.5406 41 1 11.8241 -0.1135 -5.0718 42 1 13.0274 -1.9514 -6.1683 43 1 9.5869 -5.5936 -8.6218 44 1 9.4047 -4.2825 -6.1876 45 1 3.5865 -2.5110 -0.0028 46 1 5.0535 -1.5021 0.0300 47 1 3.8533 0.2478 1.2778 48 1 3.7200 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931685661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:25 Heat of formation + Delta-G solvation = -47.096021 kcal Electronic energy + Delta-G solvation = -27666.165250 eV Core-core repulsion = 23720.813852 eV Total energy + Delta-G solvation = -3945.351398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.20549 -39.77492 -37.49519 -36.60937 -34.46714 -34.08952 -33.26297 -33.16717 -30.10768 -29.47810 -28.72641 -27.76170 -25.29353 -25.16373 -23.83862 -21.95586 -21.36221 -21.06174 -20.77269 -19.86763 -18.06919 -17.40786 -16.84606 -16.65135 -16.17100 -15.88709 -15.63846 -15.22545 -14.98086 -14.92060 -14.57495 -14.45974 -13.99528 -13.84443 -13.67163 -13.08008 -12.98998 -12.76908 -12.73366 -12.37948 -12.33488 -12.23145 -11.89990 -11.61003 -11.56022 -11.31689 -11.20413 -11.10506 -10.87734 -10.69568 -10.65685 -10.07292 -9.98904 -9.70026 -9.54668 -9.21925 -8.97445 -8.90747 -8.83861 -7.34234 -6.96185 -6.65731 -4.34532 2.70443 2.85379 2.94695 3.06300 3.10216 3.26375 3.36128 3.55077 3.72315 3.94516 4.31964 4.48657 4.54055 4.64407 4.69188 4.71567 4.75902 4.83206 4.89631 5.04906 5.13273 5.17435 5.21827 5.24983 5.43632 5.50242 5.62446 5.69268 5.70791 5.72624 5.82248 6.29708 6.42950 6.49783 6.60795 6.71495 6.74197 6.81611 6.82362 7.02229 7.08737 7.24384 7.40797 7.67672 7.86446 8.01430 8.06716 8.29871 8.47913 8.63034 8.91611 8.94503 9.07865 10.21106 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.001875 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.602187 B =14926.533258 C =15547.024313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.533 5.533 6 C 0.046 3.954 7 C 0.144 3.856 8 N -0.752 5.752 9 C 0.701 3.299 10 O -0.573 6.573 11 N -0.678 5.678 12 C 0.163 3.837 13 C -0.226 4.226 14 C -0.086 4.086 15 C -0.230 4.230 16 C 0.121 3.879 17 C -0.464 4.464 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.801 5.801 21 Si 0.907 3.093 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.184 4.184 26 C 0.011 3.989 27 C 0.065 3.935 28 O -0.384 6.384 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.398 0.602 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.278 0.722 44 H 0.122 0.878 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.061 0.939 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.583 4.891 10.911 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.258 5.258 6 C -0.083 4.083 7 C 0.019 3.981 8 N -0.410 5.410 9 C 0.401 3.599 10 O -0.449 6.449 11 N -0.324 5.324 12 C 0.071 3.929 13 C -0.247 4.247 14 C -0.105 4.105 15 C -0.250 4.250 16 C 0.118 3.882 17 C -0.494 4.494 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.427 5.427 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.206 4.206 26 C -0.117 4.117 27 C -0.012 4.012 28 O -0.303 6.303 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.226 0.774 39 H 0.232 0.768 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.080 0.920 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.053 5.736 11.661 23.063 hybrid contribution -0.414 -2.029 -1.195 2.390 sum -19.467 3.707 10.466 22.411 Atomic orbital electron populations 1.21751 0.92737 1.02987 1.02778 1.22160 0.94838 0.95743 0.84211 0.91370 1.22835 0.87400 1.00412 0.99677 1.62064 1.08921 1.52864 1.01968 1.22258 0.95149 0.97673 0.93191 1.21005 0.91269 0.98837 0.86945 1.45003 1.06450 1.62797 1.26759 1.15914 0.81760 0.80104 0.82107 1.90933 1.56845 1.49192 1.47953 1.42614 1.09723 1.55484 1.24623 1.17401 0.80665 0.94920 0.99908 1.20327 0.95164 0.97439 1.11746 1.20417 0.93856 0.97432 0.98795 1.21027 0.99118 0.94875 1.09933 1.17343 0.91104 0.91112 0.88654 1.19496 0.95576 1.08059 1.26278 0.90428 1.25865 0.94628 0.99437 0.94063 1.69812 1.11619 1.34779 1.26479 0.86387 0.79793 0.81457 0.79158 1.18919 1.20476 1.19040 1.21033 0.95902 0.97182 1.06449 1.22932 1.01971 0.96297 0.90513 1.22657 0.80738 1.00603 0.97207 1.87987 1.21239 1.78341 1.42770 0.91879 0.91472 0.90844 0.89482 0.93793 0.93940 0.89834 0.90746 0.91768 0.77419 0.76820 0.88019 0.89065 0.88898 0.91087 0.86053 0.93705 0.88796 0.92034 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.57 37.16 0.36 -0.47 16 2 C 0.09 0.67 3.43 -26.69 -0.09 0.58 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.02 0.19 4.93 -3.71 -0.02 0.17 16 5 N -0.53 -4.65 4.73 -234.30 -1.11 -5.76 16 6 C 0.05 0.39 5.07 -3.82 -0.02 0.37 16 7 C 0.14 1.67 5.61 -4.04 -0.02 1.64 16 8 N -0.75 -9.75 5.56 -65.22 -0.36 -10.11 16 9 C 0.70 12.97 8.29 -86.92 -0.72 12.25 16 10 O -0.57 -12.97 14.09 5.29 0.07 -12.90 16 11 N -0.68 -13.03 5.34 -14.27 -0.08 -13.11 16 12 C 0.16 3.90 6.25 -83.76 -0.52 3.38 16 13 C -0.23 -5.51 8.66 -39.10 -0.34 -5.84 16 14 C -0.09 -2.06 10.02 -39.69 -0.40 -2.46 16 15 C -0.23 -5.79 9.79 -38.84 -0.38 -6.17 16 16 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 17 C -0.46 -12.31 9.06 -37.74 -0.34 -12.66 16 18 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 19 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 20 N -0.80 -20.16 10.94 55.55 0.61 -19.55 16 21 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 25 C -0.18 -4.73 8.60 -38.69 -0.33 -5.06 16 26 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 27 C 0.06 0.52 7.01 37.21 0.26 0.78 16 28 O -0.38 -3.62 10.47 -35.23 -0.37 -3.99 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 38 H 0.39 3.85 8.49 -40.82 -0.35 3.50 16 39 H 0.40 6.38 8.83 -40.82 -0.36 6.02 16 40 H 0.10 2.48 6.47 -52.49 -0.34 2.14 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.81 6.38 -51.93 -0.33 0.48 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -31.75 387.16 -11.20 -42.95 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -7.50 Total: 12.05 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.27 Total: -8.95 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.94 Total: -48.53 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.29 Total: -16.89 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.75 -11.20 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931685661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.148 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds