Wall clock time and date at job start Tue Mar 31 2020 18:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.50986 * 2 1 4 4 C 1.53094 * 109.50547 * 239.91621 * 2 1 3 5 5 N 1.47022 * 109.25875 * 183.21640 * 4 2 1 6 6 C 1.46904 * 110.99794 * 182.38921 * 5 4 2 7 7 C 1.52998 * 109.46661 * 170.00056 * 6 5 4 8 8 N 1.46505 * 109.47308 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00023 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00418 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99884 * 180.02562 * 9 8 7 12 12 C 1.39954 * 120.00142 * 174.85392 * 11 9 8 13 13 C 1.39285 * 119.94610 * 325.52219 * 12 11 9 14 14 C 1.38492 * 120.43179 * 179.76474 * 13 12 11 15 15 C 1.37682 * 120.31577 * 0.51404 * 14 13 12 16 16 C 1.40740 * 119.88638 * 359.74282 * 15 14 13 17 17 C 1.41412 * 120.20988 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00291 * 25.14805 * 17 16 15 19 19 C 1.39939 * 119.99775 * 205.14109 * 17 16 15 20 20 N 1.30826 * 119.99891 * 16.78725 * 19 17 16 21 21 Si 1.86797 * 119.99744 * 196.78659 * 19 17 16 22 22 H 1.48496 * 109.47537 * 60.00283 * 21 19 17 23 23 H 1.48503 * 109.47064 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47213 * 299.99849 * 21 19 17 25 25 C 1.38235 * 119.94691 * 145.79999 * 12 11 9 26 26 C 1.47018 * 110.75057 * 58.61471 * 5 4 2 27 27 C 1.53098 * 109.25663 * 301.38633 * 26 5 4 28 28 O 1.43011 * 109.25972 * 56.85165 * 27 26 5 29 29 H 1.08995 * 109.47719 * 180.08609 * 1 2 3 30 30 H 1.08999 * 109.47159 * 300.08479 * 1 2 3 31 31 H 1.09000 * 109.47091 * 60.08398 * 1 2 3 32 32 H 1.09001 * 109.51395 * 63.28057 * 4 2 1 33 33 H 1.09007 * 109.50987 * 303.15111 * 4 2 1 34 34 H 1.08993 * 109.47207 * 289.99720 * 6 5 4 35 35 H 1.08993 * 109.47008 * 50.00335 * 6 5 4 36 36 H 1.09002 * 109.47389 * 300.00479 * 7 6 5 37 37 H 1.09006 * 109.47338 * 60.00196 * 7 6 5 38 38 H 0.96995 * 119.99159 * 0.02562 * 8 7 6 39 39 H 0.97001 * 119.99886 * 354.84523 * 11 9 8 40 40 H 1.08001 * 119.78285 * 0.02562 * 13 12 11 41 41 H 1.07991 * 119.84276 * 180.23001 * 14 13 12 42 42 H 1.07994 * 120.05975 * 179.72220 * 15 14 13 43 43 H 0.97002 * 119.99587 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.16335 * 359.97438 * 25 12 11 45 45 H 1.09004 * 109.50386 * 61.32130 * 26 5 4 46 46 H 1.08998 * 109.50383 * 181.44685 * 26 5 4 47 47 H 1.08999 * 109.50496 * 296.91510 * 27 26 5 48 48 H 1.08998 * 109.54038 * 176.80584 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7234 -1.2487 5 7 3.5093 -0.7879 -1.2048 6 6 4.0445 -1.4259 -2.4150 7 6 5.5643 -1.2538 -2.4525 8 7 6.0982 -1.8895 -3.6596 9 6 7.4231 -1.8631 -3.9054 10 8 8.1752 -1.3113 -3.1256 11 7 7.9141 -2.4474 -5.0162 12 6 9.2734 -2.3280 -5.3272 13 6 9.9566 -1.1539 -5.0193 14 6 11.3029 -1.0267 -5.3181 15 6 11.9786 -2.0567 -5.9331 16 6 11.3002 -3.2470 -6.2550 17 6 11.9876 -4.3095 -6.8862 18 1 13.0565 -4.4071 -6.7674 19 6 11.2827 -5.2344 -7.6645 20 7 10.0753 -4.9526 -8.0820 21 14 12.0658 -6.8715 -8.1073 22 1 12.3867 -7.6189 -6.8649 23 1 11.1204 -7.6653 -8.9327 24 1 13.3130 -6.6316 -8.8769 25 6 9.9345 -3.3733 -5.9447 26 6 3.9639 -1.4884 0.0052 27 6 3.4334 -0.7573 1.2413 28 8 2.0075 -0.6768 1.1659 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8907 32 1 1.7273 -0.1786 -2.1391 33 1 1.6331 -1.7338 -1.2767 34 1 3.7994 -2.4879 -2.4046 35 1 3.6042 -0.9599 -3.2964 36 1 5.8096 -0.1918 -2.4627 37 1 6.0047 -1.7198 -1.5709 38 1 5.4980 -2.3287 -4.2822 39 1 7.3254 -2.9509 -5.6001 40 1 9.4340 -0.3390 -4.5406 41 1 11.8241 -0.1135 -5.0718 42 1 13.0274 -1.9514 -6.1683 43 1 9.5869 -5.5936 -8.6218 44 1 9.4047 -4.2825 -6.1876 45 1 3.5865 -2.5110 -0.0028 46 1 5.0535 -1.5021 0.0300 47 1 3.8533 0.2478 1.2778 48 1 3.7200 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931685661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:24 Heat of formation + Delta-G solvation = -69.183110 kcal Electronic energy + Delta-G solvation = -27667.123018 eV Core-core repulsion = 23720.813852 eV Total energy + Delta-G solvation = -3946.309166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46137 -40.70479 -39.20330 -37.52955 -36.00333 -35.48248 -35.00945 -33.77373 -31.48339 -31.09499 -29.86009 -28.87002 -27.14792 -26.01531 -24.55249 -23.25467 -22.95403 -22.38309 -21.58980 -21.35582 -19.55764 -19.17104 -17.84219 -17.41696 -17.39281 -16.95004 -16.78653 -16.47098 -16.33084 -15.99551 -15.82253 -15.79255 -15.20744 -14.97864 -14.79447 -14.61872 -14.32965 -14.15495 -13.60486 -13.48620 -13.24993 -13.07107 -13.04888 -12.82752 -12.82275 -12.70044 -12.53645 -12.33610 -12.13333 -12.00341 -11.86540 -11.56105 -11.49536 -11.28015 -11.05536 -10.77717 -10.63047 -10.14897 -9.49933 -9.30748 -8.81039 -8.51183 -6.33331 0.90979 1.07781 1.41145 1.50911 1.55266 1.61021 2.15577 2.23786 2.67691 2.79000 2.83652 3.37295 3.66808 3.74710 3.84428 3.89774 4.02821 4.14335 4.20125 4.23854 4.37958 4.46682 4.51171 4.60119 4.69001 4.71582 4.75988 4.78955 4.82932 4.88173 4.89858 4.96572 5.08606 5.12762 5.17718 5.22155 5.27425 5.35837 5.38910 5.76474 5.82781 5.84400 5.86388 6.01978 6.11039 6.18433 6.21362 6.40389 6.69622 6.95741 6.98911 7.09119 7.56225 8.36128 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.001875 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.602187 B =14926.533258 C =15547.024313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.065 0.935 4 C 0.027 3.973 5 N -0.544 5.544 6 C 0.057 3.943 7 C 0.147 3.853 8 N -0.727 5.727 9 C 0.699 3.301 10 O -0.616 6.616 11 N -0.673 5.673 12 C 0.170 3.830 13 C -0.240 4.240 14 C -0.084 4.084 15 C -0.250 4.250 16 C 0.093 3.907 17 C -0.499 4.499 18 H 0.076 0.924 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.981 3.019 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.203 4.203 26 C 0.012 3.988 27 C 0.064 3.936 28 O -0.401 6.401 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.412 0.588 39 H 0.413 0.587 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.289 0.711 44 H 0.114 0.886 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.059 0.941 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.155 4.204 10.473 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.083 0.917 4 C -0.100 4.100 5 N -0.269 5.269 6 C -0.071 4.071 7 C 0.023 3.977 8 N -0.385 5.385 9 C 0.400 3.600 10 O -0.495 6.495 11 N -0.320 5.320 12 C 0.076 3.924 13 C -0.261 4.261 14 C -0.103 4.103 15 C -0.270 4.270 16 C 0.090 3.910 17 C -0.528 4.528 18 H 0.094 0.906 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.802 3.198 22 H -0.189 1.189 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.226 4.226 26 C -0.116 4.116 27 C -0.013 4.013 28 O -0.321 6.321 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.132 0.868 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.710 5.050 11.213 24.086 hybrid contribution -0.001 -1.740 -1.019 2.016 sum -20.711 3.311 10.194 23.320 Atomic orbital electron populations 1.21752 0.91310 1.03092 1.03659 1.22325 0.95990 0.95394 0.83794 0.91730 1.22870 0.86333 1.00583 1.00242 1.62053 1.09910 1.53006 1.01925 1.22139 0.92586 0.98498 0.93882 1.21057 0.93423 0.97583 0.85678 1.44771 1.04613 1.61744 1.27355 1.16058 0.83117 0.79531 0.81327 1.90904 1.58475 1.50927 1.49221 1.42438 1.08403 1.55878 1.25320 1.17428 0.82505 0.94078 0.98393 1.20482 0.95630 0.97738 1.12259 1.20724 0.93891 0.98085 0.97614 1.21200 0.99737 0.95055 1.10989 1.17757 0.92056 0.91979 0.89240 1.19758 0.95866 1.09481 1.27746 0.90607 1.26686 0.95130 1.02493 0.93372 1.69844 1.12556 1.36072 1.26237 0.85273 0.79066 0.76579 0.78898 1.18854 1.18997 1.18550 1.20979 0.95904 0.97597 1.08078 1.22904 1.01613 0.96241 0.90833 1.22719 0.80341 1.00635 0.97582 1.87970 1.21770 1.78624 1.43739 0.92105 0.91593 0.89002 0.87916 0.93858 0.92976 0.88178 0.92201 0.92792 0.75115 0.75008 0.88071 0.86338 0.88070 0.90082 0.86781 0.93919 0.89363 0.92271 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 71.98 0.69 -0.67 16 2 C 0.08 1.14 3.43 30.62 0.10 1.25 16 3 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 4 C 0.03 0.35 4.93 86.31 0.43 0.78 16 5 N -0.54 -8.63 4.73 -895.19 -4.23 -12.86 16 6 C 0.06 0.84 5.07 86.30 0.44 1.28 16 7 C 0.15 3.23 5.61 86.38 0.48 3.71 16 8 N -0.73 -17.72 5.56 -478.53 -2.66 -20.38 16 9 C 0.70 25.45 8.29 179.06 1.48 26.94 16 10 O -0.62 -27.99 14.09 -3.98 -0.06 -28.05 16 11 N -0.67 -25.55 5.34 -317.33 -1.69 -27.25 16 12 C 0.17 8.17 6.25 38.10 0.24 8.41 16 13 C -0.24 -11.77 8.66 22.58 0.20 -11.58 16 14 C -0.08 -4.05 10.02 22.20 0.22 -3.83 16 15 C -0.25 -12.82 9.79 22.75 0.22 -12.60 16 16 C 0.09 5.09 5.57 -21.31 -0.12 4.98 16 17 C -0.50 -26.94 9.06 23.46 0.21 -26.72 16 18 H 0.08 3.96 7.90 -2.92 -0.02 3.94 16 19 C 0.04 1.90 5.16 85.25 0.44 2.33 16 20 N -0.82 -41.23 10.94 21.82 0.24 -40.99 16 21 Si 0.98 37.55 29.59 68.60 2.03 39.58 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 C -0.20 -10.67 8.60 22.85 0.20 -10.47 16 26 C 0.01 0.20 5.44 86.31 0.47 0.67 16 27 C 0.06 0.99 7.01 72.01 0.50 1.49 16 28 O -0.40 -7.22 10.47 -148.98 -1.56 -8.78 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.05 0.70 8.12 -2.39 -0.02 0.69 16 35 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.33 6.52 -2.38 -0.02 1.31 16 38 H 0.41 7.04 8.49 -92.71 -0.79 6.25 16 39 H 0.41 12.85 8.83 -92.71 -0.82 12.03 16 40 H 0.10 4.95 6.47 -2.91 -0.02 4.93 16 41 H 0.12 4.89 8.06 -2.92 -0.02 4.87 16 42 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 43 H 0.29 12.99 8.30 -92.71 -0.77 12.22 16 44 H 0.11 6.03 6.17 -2.91 -0.02 6.02 16 45 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.09 1.51 6.38 -2.39 -0.02 1.49 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.14 387.16 -2.35 -71.49 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.63 Total: 41.26 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 6.21 Total: -14.03 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -8.35 Total: -101.48 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.62 Total: -36.83 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -69.14 -2.35 -71.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931685661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.308 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds