Wall clock time and date at job start Tue Mar 31 2020 18:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.50308 * 2 1 4 4 C 1.53103 * 109.54177 * 120.10201 * 2 1 3 5 5 N 1.47013 * 109.25526 * 176.80815 * 4 2 1 6 6 C 1.46904 * 110.99774 * 177.60653 * 5 4 2 7 7 C 1.52995 * 109.47104 * 189.67952 * 6 5 4 8 8 N 1.46500 * 109.47206 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00352 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99554 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00305 * 180.02562 * 9 8 7 12 12 C 1.39949 * 120.00297 * 174.81847 * 11 9 8 13 13 C 1.39286 * 119.95284 * 146.37465 * 12 11 9 14 14 C 1.38483 * 120.43693 * 179.97438 * 13 12 11 15 15 C 1.37690 * 120.31733 * 0.02562 * 14 13 12 16 16 C 1.40742 * 119.88393 * 359.97438 * 15 14 13 17 17 C 1.41408 * 120.21063 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00240 * 151.80557 * 17 16 15 19 19 C 1.39932 * 119.99564 * 331.81007 * 17 16 15 20 20 N 1.30825 * 120.00424 * 348.98030 * 19 17 16 21 21 Si 1.86802 * 119.99689 * 168.99291 * 19 17 16 22 22 H 1.48501 * 109.47247 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47432 * 119.99600 * 21 19 17 24 24 H 1.48500 * 109.46962 * 239.99756 * 21 19 17 25 25 C 1.38239 * 119.94456 * 326.09939 * 12 11 9 26 26 C 1.47008 * 110.75573 * 301.38374 * 5 4 2 27 27 C 1.53102 * 109.25607 * 58.61797 * 26 5 4 28 28 O 1.43015 * 109.50861 * 239.90879 * 2 1 3 29 29 H 1.09006 * 109.46522 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47549 * 300.00326 * 1 2 3 31 31 H 1.09004 * 109.47067 * 60.00874 * 1 2 3 32 32 H 1.08994 * 109.50440 * 296.74580 * 4 2 1 33 33 H 1.08997 * 109.50383 * 56.87265 * 4 2 1 34 34 H 1.08998 * 109.47164 * 309.68571 * 6 5 4 35 35 H 1.09000 * 109.46789 * 69.68111 * 6 5 4 36 36 H 1.08998 * 109.47616 * 300.00343 * 7 6 5 37 37 H 1.09000 * 109.47167 * 60.00392 * 7 6 5 38 38 H 0.96999 * 119.99955 * 0.02562 * 8 7 6 39 39 H 0.97004 * 119.99939 * 354.81152 * 11 9 8 40 40 H 1.08002 * 119.78092 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.84486 * 180.02562 * 14 13 12 42 42 H 1.07998 * 120.05353 * 180.02562 * 15 14 13 43 43 H 0.96995 * 120.00367 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.16251 * 0.02562 * 25 12 11 45 45 H 1.09000 * 109.50715 * 298.68607 * 26 5 4 46 46 H 1.08995 * 109.54456 * 178.57289 * 26 5 4 47 47 H 1.08999 * 109.50444 * 183.21713 * 27 26 5 48 48 H 1.09002 * 109.54268 * 63.11166 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0421 -0.7236 1.2482 5 7 3.5102 -0.7872 1.2038 6 6 4.0464 -1.4253 2.4135 7 6 5.5669 -1.2591 2.4465 8 7 6.1016 -1.8949 3.6532 9 6 7.4272 -1.8733 3.8954 10 8 8.1794 -1.3257 3.1125 11 7 7.9191 -2.4587 5.0052 12 6 9.3026 -2.5317 5.2033 13 6 9.8258 -2.4534 6.4918 14 6 11.1931 -2.5251 6.6994 15 6 12.0511 -2.6742 5.6329 16 6 11.5370 -2.7548 4.3252 17 6 12.4120 -2.9075 3.2249 18 1 12.0722 -3.4079 2.3301 19 6 13.7181 -2.4102 3.2954 20 7 14.0656 -1.6216 4.2797 21 14 14.9654 -2.8722 1.9838 22 1 14.3269 -3.7695 0.9876 23 1 15.4486 -1.6429 1.3052 24 1 16.1124 -3.5720 2.6161 25 6 10.1475 -2.6872 4.1202 26 6 3.9649 -1.4867 -0.0066 27 6 3.4335 -0.7554 -1.2422 28 8 2.0076 -0.6759 -1.1664 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.7281 -0.1795 2.1389 33 1 1.6347 -1.7342 1.2759 34 1 3.6103 -0.9562 3.2954 35 1 3.7970 -2.4863 2.4055 36 1 6.0030 -1.7281 1.5645 37 1 5.8164 -0.1980 2.4545 38 1 5.5015 -2.3314 4.2779 39 1 7.3143 -2.8293 5.6668 40 1 9.1606 -2.3359 7.3346 41 1 11.5883 -2.4637 7.7026 42 1 13.1167 -2.7301 5.7997 43 1 14.9708 -1.2766 4.3284 44 1 9.7427 -2.7521 3.1212 45 1 3.5883 -2.5096 0.0010 46 1 5.0545 -1.5003 -0.0323 47 1 3.7202 -1.3026 -2.1403 48 1 3.8528 0.2501 -1.2792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931685664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:28 Heat of formation + Delta-G solvation = -44.714734 kcal Electronic energy + Delta-G solvation = -27732.162928 eV Core-core repulsion = 23786.914791 eV Total energy + Delta-G solvation = -3945.248137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19552 -39.77813 -37.47399 -36.58775 -34.51737 -34.17699 -33.20071 -32.92628 -30.03649 -29.75500 -28.65545 -27.58122 -25.32604 -25.14083 -23.82316 -22.00814 -21.40685 -20.82123 -20.75235 -19.98473 -18.00447 -17.57631 -16.82422 -16.65314 -16.04830 -15.87402 -15.44191 -15.21604 -15.11780 -14.85889 -14.58933 -14.38949 -13.92435 -13.89980 -13.65806 -13.04755 -12.96796 -12.83506 -12.75933 -12.36670 -12.23069 -12.13815 -11.85993 -11.62276 -11.54180 -11.31847 -11.23245 -11.07558 -10.85093 -10.58859 -10.44491 -10.13720 -9.97127 -9.69905 -9.54631 -9.17799 -8.89979 -8.86320 -8.82104 -7.35957 -6.81233 -6.60695 -4.28885 2.72444 2.83151 2.99624 3.13830 3.19981 3.24474 3.37810 3.55090 3.75832 4.02536 4.33049 4.49798 4.55312 4.62353 4.72936 4.73943 4.77277 4.84223 4.91219 5.06697 5.14236 5.17454 5.23767 5.25794 5.46005 5.52383 5.64335 5.71223 5.73981 5.77744 5.84242 6.27164 6.42977 6.44825 6.51469 6.62671 6.80612 6.83827 6.84153 7.09519 7.15287 7.30896 7.39718 7.74222 7.86657 8.04823 8.16216 8.31293 8.47747 8.73060 8.96034 9.03110 9.09577 10.32534 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.002070 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.775006 B =13521.054802 C =14962.977166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.533 5.533 6 C 0.047 3.953 7 C 0.143 3.857 8 N -0.752 5.752 9 C 0.698 3.302 10 O -0.561 6.561 11 N -0.682 5.682 12 C 0.167 3.833 13 C -0.260 4.260 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.802 5.802 21 Si 0.911 3.089 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.273 1.273 25 C -0.207 4.207 26 C 0.011 3.989 27 C 0.065 3.935 28 O -0.384 6.384 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.391 0.609 39 H 0.393 0.607 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.278 0.722 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.488 0.562 -4.244 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.258 5.258 6 C -0.082 4.082 7 C 0.018 3.982 8 N -0.410 5.410 9 C 0.398 3.602 10 O -0.436 6.436 11 N -0.328 5.328 12 C 0.074 3.926 13 C -0.282 4.282 14 C -0.113 4.113 15 C -0.188 4.188 16 C 0.115 3.885 17 C -0.487 4.487 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.428 5.428 21 Si 0.735 3.265 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.228 4.228 26 C -0.117 4.117 27 C -0.012 4.012 28 O -0.304 6.304 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.224 0.776 39 H 0.227 0.773 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.118 0.882 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.549 1.624 -5.107 23.177 hybrid contribution -0.110 -1.161 0.445 1.248 sum -22.659 0.463 -4.662 23.138 Atomic orbital electron populations 1.21751 0.92755 1.02958 1.02769 1.22162 0.94816 0.95778 0.84229 0.91373 1.22826 0.87421 1.00365 0.99668 1.62051 1.08860 1.52937 1.01985 1.22249 0.95129 0.97603 0.93187 1.21022 0.91214 0.98950 0.86984 1.44994 1.06387 1.62999 1.26643 1.15931 0.81796 0.79863 0.82634 1.91009 1.56688 1.48163 1.47704 1.42576 1.07038 1.61198 1.21993 1.17227 0.79465 1.01471 0.94404 1.20022 0.95106 1.19505 0.93553 1.20465 0.92598 1.00808 0.97432 1.21394 0.99451 1.06327 0.91668 1.17523 0.90533 0.87499 0.92957 1.19566 0.95437 1.32935 1.00751 0.90580 1.25880 0.99071 0.92973 0.96439 1.69811 1.19744 1.23581 1.29659 0.86225 0.80025 0.79203 0.81004 1.18522 1.20031 1.19868 1.20998 0.93365 1.11922 0.96544 1.22933 1.02064 0.96260 0.90457 1.22666 0.80668 1.00662 0.97235 1.87986 1.21282 1.78372 1.42710 0.91896 0.90873 0.91461 0.89527 0.93826 0.89918 0.93994 0.91627 0.90694 0.77604 0.77334 0.89376 0.89049 0.86110 0.91137 0.87491 0.93711 0.88701 0.88198 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.57 37.16 0.36 -0.48 16 2 C 0.09 0.69 3.42 -26.68 -0.09 0.59 16 3 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 4 C 0.03 0.19 4.93 -3.71 -0.02 0.17 16 5 N -0.53 -4.76 4.73 -234.31 -1.11 -5.86 16 6 C 0.05 0.39 5.07 -3.82 -0.02 0.38 16 7 C 0.14 1.69 5.60 -4.04 -0.02 1.66 16 8 N -0.75 -9.58 5.56 -65.23 -0.36 -9.94 16 9 C 0.70 12.94 8.29 -86.92 -0.72 12.21 16 10 O -0.56 -13.37 14.06 5.29 0.07 -13.30 16 11 N -0.68 -12.34 5.35 -14.27 -0.08 -12.41 16 12 C 0.17 3.85 6.26 -83.76 -0.52 3.32 16 13 C -0.26 -5.81 9.97 -39.10 -0.39 -6.20 16 14 C -0.09 -2.23 10.02 -39.69 -0.40 -2.62 16 15 C -0.17 -4.50 8.66 -38.84 -0.34 -4.83 16 16 C 0.12 3.31 5.55 -106.85 -0.59 2.71 16 17 C -0.46 -12.78 9.06 -37.74 -0.34 -13.13 16 18 H 0.08 2.08 7.87 -52.49 -0.41 1.66 16 19 C 0.07 1.91 5.25 -17.35 -0.09 1.82 16 20 N -0.80 -21.60 10.81 55.55 0.60 -21.00 16 21 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 25 C -0.21 -5.48 8.39 -38.68 -0.32 -5.80 16 26 C 0.01 0.10 5.43 -3.71 -0.02 0.08 16 27 C 0.06 0.55 7.01 37.21 0.26 0.81 16 28 O -0.38 -3.73 10.47 -35.23 -0.37 -4.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.07 0.85 6.51 -51.93 -0.34 0.52 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.39 3.54 8.49 -40.82 -0.35 3.19 16 39 H 0.39 5.36 8.83 -40.82 -0.36 5.00 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.12 3.31 6.18 -52.49 -0.32 2.98 16 43 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 44 H 0.11 2.94 6.44 -52.49 -0.34 2.61 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.87 6.37 -51.93 -0.33 0.54 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -33.52 387.01 -11.21 -44.73 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.50 Total: 10.80 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -3.28 Total: -9.30 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.95 Total: -49.21 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.29 Total: -17.39 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.52 -11.21 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931685664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.015 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds