Wall clock time and date at job start Tue Mar 31 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.50308 * 2 1 4 4 C 1.53103 * 109.54177 * 120.10201 * 2 1 3 5 5 N 1.47013 * 109.25526 * 176.80815 * 4 2 1 6 6 C 1.46904 * 110.99774 * 177.60653 * 5 4 2 7 7 C 1.52995 * 109.47104 * 189.67952 * 6 5 4 8 8 N 1.46500 * 109.47206 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00352 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99554 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00305 * 180.02562 * 9 8 7 12 12 C 1.39949 * 120.00297 * 174.81847 * 11 9 8 13 13 C 1.39286 * 119.95284 * 146.37465 * 12 11 9 14 14 C 1.38483 * 120.43693 * 179.97438 * 13 12 11 15 15 C 1.37690 * 120.31733 * 0.02562 * 14 13 12 16 16 C 1.40742 * 119.88393 * 359.97438 * 15 14 13 17 17 C 1.41408 * 120.21063 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00240 * 151.80557 * 17 16 15 19 19 C 1.39932 * 119.99564 * 331.81007 * 17 16 15 20 20 N 1.30825 * 120.00424 * 348.98030 * 19 17 16 21 21 Si 1.86802 * 119.99689 * 168.99291 * 19 17 16 22 22 H 1.48501 * 109.47247 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47432 * 119.99600 * 21 19 17 24 24 H 1.48500 * 109.46962 * 239.99756 * 21 19 17 25 25 C 1.38239 * 119.94456 * 326.09939 * 12 11 9 26 26 C 1.47008 * 110.75573 * 301.38374 * 5 4 2 27 27 C 1.53102 * 109.25607 * 58.61797 * 26 5 4 28 28 O 1.43015 * 109.50861 * 239.90879 * 2 1 3 29 29 H 1.09006 * 109.46522 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47549 * 300.00326 * 1 2 3 31 31 H 1.09004 * 109.47067 * 60.00874 * 1 2 3 32 32 H 1.08994 * 109.50440 * 296.74580 * 4 2 1 33 33 H 1.08997 * 109.50383 * 56.87265 * 4 2 1 34 34 H 1.08998 * 109.47164 * 309.68571 * 6 5 4 35 35 H 1.09000 * 109.46789 * 69.68111 * 6 5 4 36 36 H 1.08998 * 109.47616 * 300.00343 * 7 6 5 37 37 H 1.09000 * 109.47167 * 60.00392 * 7 6 5 38 38 H 0.96999 * 119.99955 * 0.02562 * 8 7 6 39 39 H 0.97004 * 119.99939 * 354.81152 * 11 9 8 40 40 H 1.08002 * 119.78092 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.84486 * 180.02562 * 14 13 12 42 42 H 1.07998 * 120.05353 * 180.02562 * 15 14 13 43 43 H 0.96995 * 120.00367 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.16251 * 0.02562 * 25 12 11 45 45 H 1.09000 * 109.50715 * 298.68607 * 26 5 4 46 46 H 1.08995 * 109.54456 * 178.57289 * 26 5 4 47 47 H 1.08999 * 109.50444 * 183.21713 * 27 26 5 48 48 H 1.09002 * 109.54268 * 63.11166 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0421 -0.7236 1.2482 5 7 3.5102 -0.7872 1.2038 6 6 4.0464 -1.4253 2.4135 7 6 5.5669 -1.2591 2.4465 8 7 6.1016 -1.8949 3.6532 9 6 7.4272 -1.8733 3.8954 10 8 8.1794 -1.3257 3.1125 11 7 7.9191 -2.4587 5.0052 12 6 9.3026 -2.5317 5.2033 13 6 9.8258 -2.4534 6.4918 14 6 11.1931 -2.5251 6.6994 15 6 12.0511 -2.6742 5.6329 16 6 11.5370 -2.7548 4.3252 17 6 12.4120 -2.9075 3.2249 18 1 12.0722 -3.4079 2.3301 19 6 13.7181 -2.4102 3.2954 20 7 14.0656 -1.6216 4.2797 21 14 14.9654 -2.8722 1.9838 22 1 14.3269 -3.7695 0.9876 23 1 15.4486 -1.6429 1.3052 24 1 16.1124 -3.5720 2.6161 25 6 10.1475 -2.6872 4.1202 26 6 3.9649 -1.4867 -0.0066 27 6 3.4335 -0.7554 -1.2422 28 8 2.0076 -0.6759 -1.1664 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.7281 -0.1795 2.1389 33 1 1.6347 -1.7342 1.2759 34 1 3.6103 -0.9562 3.2954 35 1 3.7970 -2.4863 2.4055 36 1 6.0030 -1.7281 1.5645 37 1 5.8164 -0.1980 2.4545 38 1 5.5015 -2.3314 4.2779 39 1 7.3143 -2.8293 5.6668 40 1 9.1606 -2.3359 7.3346 41 1 11.5883 -2.4637 7.7026 42 1 13.1167 -2.7301 5.7997 43 1 14.9708 -1.2766 4.3284 44 1 9.7427 -2.7521 3.1212 45 1 3.5883 -2.5096 0.0010 46 1 5.0545 -1.5003 -0.0323 47 1 3.7202 -1.3026 -2.1403 48 1 3.8528 0.2501 -1.2792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931685664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:27 Heat of formation + Delta-G solvation = -69.387758 kcal Electronic energy + Delta-G solvation = -27733.232831 eV Core-core repulsion = 23786.914791 eV Total energy + Delta-G solvation = -3946.318040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47508 -40.71071 -39.19509 -37.53549 -36.18607 -35.49230 -34.75756 -33.77447 -31.72539 -31.07934 -29.72974 -28.81896 -27.23947 -26.01335 -24.56916 -23.40089 -22.72932 -22.39822 -21.67380 -21.36236 -19.60505 -19.25463 -17.71316 -17.43574 -17.36770 -16.99143 -16.79402 -16.42292 -16.40956 -16.00492 -15.81068 -15.76406 -15.25636 -14.99597 -14.79160 -14.58271 -14.49492 -13.95251 -13.62351 -13.57026 -13.24573 -13.11502 -13.05164 -12.84554 -12.82730 -12.66824 -12.53052 -12.20019 -12.13834 -12.01483 -12.00128 -11.57582 -11.50279 -11.33346 -11.06069 -10.72188 -10.63555 -10.14981 -9.49525 -9.34309 -8.66657 -8.55254 -6.36888 0.93859 1.03308 1.36096 1.48518 1.51751 1.59614 2.17716 2.22980 2.67447 2.77840 2.83078 3.38857 3.66743 3.75688 3.84285 3.89143 4.02200 4.13874 4.20042 4.23134 4.37898 4.48633 4.50621 4.60075 4.65132 4.68803 4.71174 4.78474 4.83736 4.87810 4.96240 5.07141 5.08572 5.12403 5.14695 5.20257 5.27516 5.34679 5.39414 5.73294 5.83601 5.84462 5.87445 6.07597 6.13791 6.19405 6.20608 6.39215 6.71500 6.96617 7.02548 7.11157 7.60068 8.38947 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.002070 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.775006 B =13521.054802 C =14962.977166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.063 0.937 4 C 0.029 3.971 5 N -0.546 5.546 6 C 0.059 3.941 7 C 0.145 3.855 8 N -0.724 5.724 9 C 0.694 3.306 10 O -0.619 6.619 11 N -0.668 5.668 12 C 0.173 3.827 13 C -0.246 4.246 14 C -0.092 4.092 15 C -0.193 4.193 16 C 0.085 3.915 17 C -0.500 4.500 18 H 0.064 0.936 19 C 0.030 3.970 20 N -0.832 5.832 21 Si 0.986 3.014 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.233 4.233 26 C 0.013 3.987 27 C 0.064 3.936 28 O -0.401 6.401 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.415 0.585 39 H 0.419 0.581 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.287 0.713 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.569 0.372 -2.706 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 H 0.081 0.919 4 C -0.099 4.099 5 N -0.271 5.271 6 C -0.069 4.069 7 C 0.021 3.979 8 N -0.382 5.382 9 C 0.394 3.606 10 O -0.498 6.498 11 N -0.317 5.317 12 C 0.079 3.921 13 C -0.267 4.267 14 C -0.111 4.111 15 C -0.213 4.213 16 C 0.083 3.917 17 C -0.531 4.531 18 H 0.082 0.918 19 C -0.183 4.183 20 N -0.459 5.459 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.255 4.255 26 C -0.116 4.116 27 C -0.013 4.013 28 O -0.321 6.321 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.252 0.748 39 H 0.257 0.743 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.129 0.871 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.735 1.409 -3.518 25.024 hybrid contribution 0.356 -1.057 0.037 1.116 sum -24.380 0.352 -3.480 24.629 Atomic orbital electron populations 1.21751 0.91193 1.03140 1.03664 1.22347 0.96063 0.95379 0.83854 0.91882 1.22862 0.86187 1.00651 1.00214 1.62034 1.10007 1.53139 1.01949 1.22132 0.92219 0.98625 0.93892 1.21045 0.93651 0.97444 0.85797 1.44691 1.04514 1.61855 1.27117 1.16171 0.83118 0.79354 0.81961 1.90987 1.58697 1.50596 1.49490 1.42288 1.05565 1.61071 1.22728 1.17284 0.81412 0.99458 0.93912 1.20467 0.95229 1.16700 0.94353 1.20853 0.93091 0.99095 0.98088 1.21353 0.99316 1.08497 0.92162 1.17873 0.91467 0.88541 0.93865 1.19761 0.97291 1.35093 1.00924 0.91811 1.26738 1.00363 0.92266 0.98896 1.69859 1.20676 1.24105 1.31285 0.85118 0.77320 0.79051 0.77900 1.18655 1.19173 1.18145 1.20942 0.93648 1.14134 0.96740 1.22882 1.01466 0.96317 0.90895 1.22707 0.80401 1.00566 0.97616 1.87969 1.21644 1.78667 1.43788 0.92013 0.88908 0.91673 0.87736 0.93691 0.87839 0.92758 0.93245 0.92570 0.74811 0.74266 0.84821 0.85760 0.87638 0.90265 0.89858 0.93748 0.89687 0.87127 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 71.98 0.69 -0.67 16 2 C 0.08 1.16 3.42 30.63 0.10 1.26 16 3 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 4 C 0.03 0.37 4.93 86.32 0.43 0.79 16 5 N -0.55 -8.96 4.73 -895.24 -4.23 -13.19 16 6 C 0.06 0.87 5.07 86.30 0.44 1.31 16 7 C 0.15 3.32 5.60 86.38 0.48 3.80 16 8 N -0.72 -17.14 5.56 -478.55 -2.66 -19.80 16 9 C 0.69 25.33 8.29 179.06 1.49 26.81 16 10 O -0.62 -30.45 14.06 -3.99 -0.06 -30.51 16 11 N -0.67 -22.94 5.35 -317.33 -1.70 -24.64 16 12 C 0.17 7.88 6.26 38.10 0.24 8.12 16 13 C -0.25 -10.32 9.97 22.58 0.23 -10.09 16 14 C -0.09 -4.25 10.02 22.20 0.22 -4.02 16 15 C -0.19 -10.56 8.66 22.75 0.20 -10.36 16 16 C 0.09 5.01 5.55 -21.31 -0.12 4.89 16 17 C -0.50 -29.66 9.06 23.46 0.21 -29.44 16 18 H 0.06 3.75 7.87 -2.91 -0.02 3.73 16 19 C 0.03 1.66 5.25 85.25 0.45 2.10 16 20 N -0.83 -46.22 10.81 21.82 0.24 -45.99 16 21 Si 0.99 41.27 29.57 68.60 2.03 43.30 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 C -0.23 -12.82 8.39 22.85 0.19 -12.63 16 26 C 0.01 0.22 5.43 86.32 0.47 0.69 16 27 C 0.06 1.07 7.01 72.02 0.50 1.58 16 28 O -0.40 -7.51 10.47 -148.98 -1.56 -9.07 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 1.13 8.04 -2.39 -0.02 1.11 16 35 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.05 1.31 6.51 -2.39 -0.02 1.30 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 6.08 8.49 -92.71 -0.79 5.29 16 39 H 0.42 9.90 8.83 -92.71 -0.82 9.08 16 40 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 42 H 0.11 5.99 6.18 -2.91 -0.02 5.97 16 43 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 44 H 0.08 4.89 6.44 -2.91 -0.02 4.87 16 45 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 1.62 6.37 -2.39 -0.02 1.61 16 47 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.71 387.01 -2.35 -80.06 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.62 Total: 35.72 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 6.22 Total: -15.88 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -8.35 Total: -103.62 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.62 Total: -39.58 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -77.71 -2.35 -80.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931685664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.672 kcal (2) G-P(sol) polarization free energy of solvation -77.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds