Wall clock time and date at job start Tue Mar 31 2020 17:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50851 * 2 1 4 4 C 1.53046 * 109.49238 * 239.94207 * 2 1 3 5 5 N 1.46952 * 109.36874 * 181.63258 * 4 2 1 6 6 C 1.46898 * 111.00262 * 183.18625 * 5 4 2 7 7 C 1.52996 * 109.46882 * 67.76278 * 6 5 4 8 8 H 1.08993 * 109.47243 * 303.76092 * 7 6 5 9 9 C 1.47208 * 109.47245 * 63.76042 * 7 6 5 10 10 N 5.16384 * 132.57477 * 298.06495 * 2 1 3 11 11 C 1.52999 * 109.47151 * 183.75609 * 7 6 5 12 12 C 1.50699 * 109.47472 * 175.00053 * 11 7 6 13 13 H 1.08007 * 119.99684 * 0.02562 * 12 11 7 14 14 C 1.37876 * 120.00454 * 180.02562 * 12 11 7 15 15 N 1.31509 * 119.99797 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99952 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47428 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46850 * 120.00564 * 16 14 12 19 19 H 1.48496 * 109.47012 * 239.99841 * 16 14 12 20 20 C 1.46965 * 110.87917 * 59.31985 * 5 4 2 21 21 C 1.53056 * 109.36369 * 300.68282 * 20 5 4 22 22 H 1.09000 * 109.48547 * 298.41302 * 21 20 5 23 23 C 1.53001 * 109.48909 * 178.36950 * 21 20 5 24 24 N 1.46953 * 109.48531 * 120.04974 * 2 1 3 25 25 C 1.46899 * 111.00362 * 303.15802 * 24 2 1 26 26 C 1.53004 * 109.47119 * 301.95580 * 25 24 2 27 27 F 1.39903 * 109.46695 * 64.02008 * 26 25 24 28 28 F 1.39896 * 109.47202 * 184.01891 * 26 25 24 29 29 F 1.39903 * 109.47040 * 304.02443 * 26 25 24 30 30 H 1.08995 * 109.47177 * 176.14022 * 1 2 3 31 31 H 1.09000 * 109.47113 * 296.14446 * 1 2 3 32 32 H 1.09002 * 109.46863 * 56.14570 * 1 2 3 33 33 H 1.08999 * 109.48669 * 61.65983 * 4 2 1 34 34 H 1.09005 * 109.48639 * 301.60069 * 4 2 1 35 35 H 1.08998 * 109.46778 * 187.76372 * 6 5 4 36 36 H 1.08997 * 109.46822 * 307.76367 * 6 5 4 37 37 H 1.08996 * 109.47406 * 295.00221 * 11 7 6 38 38 H 1.09001 * 109.46961 * 55.00150 * 11 7 6 39 39 H 0.97000 * 120.00216 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.48632 * 60.64865 * 20 5 4 41 41 H 1.08995 * 109.48952 * 180.71672 * 20 5 4 42 42 H 1.09000 * 109.47105 * 59.99822 * 23 21 20 43 43 H 1.08993 * 109.46847 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46749 * 299.99807 * 23 21 20 45 45 H 1.08998 * 109.47149 * 61.95486 * 25 24 2 46 46 H 1.09002 * 109.47245 * 181.95840 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 -1.2487 5 7 3.5097 -0.7553 -1.2264 6 6 4.0412 -1.3753 -2.4474 7 6 3.7526 -0.4697 -3.6463 8 1 2.6814 -0.2785 -3.7077 9 6 4.4700 0.8052 -3.4822 10 7 5.0237 1.7890 -3.3555 11 6 4.2223 -1.1575 -4.9298 12 6 3.8283 -0.3222 -6.1206 13 1 3.2964 0.6067 -5.9763 14 6 4.1467 -0.7436 -7.3941 15 7 4.7939 -1.8749 -7.5698 16 14 3.6576 0.2916 -8.8701 17 1 2.9436 1.5083 -8.4067 18 1 4.8754 0.6889 -9.6214 19 1 2.7657 -0.4992 -9.7557 20 6 4.0000 -1.4491 -0.0271 21 6 3.4893 -0.7264 1.2217 22 1 3.8758 0.2926 1.2357 23 6 3.9643 -1.4698 2.4717 24 7 2.0202 -0.6937 1.1992 25 6 1.4887 -0.0738 2.4203 26 6 1.8913 1.4018 2.4599 27 9 1.2950 2.0767 1.3894 28 9 1.4642 1.9695 3.6651 29 9 3.2828 1.5083 2.3614 30 1 -0.3633 -1.0253 -0.0692 31 1 -0.3633 0.4528 0.9225 32 1 -0.3633 0.5725 -0.8535 33 1 1.7022 -0.1931 -2.1393 34 1 1.6545 -1.7419 -1.2625 35 1 5.1178 -1.5123 -2.3463 36 1 3.5645 -2.3435 -2.6004 37 1 5.3063 -1.2687 -4.9067 38 1 3.7578 -2.1406 -5.0060 39 1 5.0183 -2.1712 -8.4657 40 1 3.6360 -2.4765 -0.0271 41 1 5.0900 -1.4491 -0.0271 42 1 5.0539 -1.4955 2.4871 43 1 3.6001 -0.9552 3.3608 44 1 3.5769 -2.4886 2.4578 45 1 0.4017 -0.1541 2.4250 46 1 1.8946 -0.5847 3.2934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934798414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:47 Heat of formation + Delta-G solvation = -108.743082 kcal Electronic energy + Delta-G solvation = -30660.670798 eV Core-core repulsion = 26170.789443 eV Total energy + Delta-G solvation = -4489.881355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.49801 -47.96927 -47.92274 -40.00885 -37.24766 -35.33393 -33.83638 -33.56747 -31.94794 -30.40900 -28.05266 -27.07842 -26.80851 -24.86831 -23.28159 -21.89941 -21.59402 -21.37253 -20.33844 -18.95230 -18.75905 -17.21897 -16.84500 -16.55419 -16.15390 -15.96865 -15.78623 -14.92946 -14.65314 -14.63175 -14.44183 -14.40934 -14.21727 -13.99446 -13.88523 -13.62126 -13.32730 -13.13548 -12.96320 -12.76806 -12.52868 -12.43878 -12.31024 -11.98977 -11.88710 -11.85124 -11.79693 -11.45204 -11.21501 -11.05794 -11.05103 -10.78232 -10.72719 -10.62186 -10.46436 -10.12348 -9.53732 -9.21133 -8.74484 -8.46486 -8.21365 -6.10131 -4.13076 2.49543 3.20283 3.28194 3.36599 3.41298 3.53219 3.70902 3.73705 3.83525 3.91707 3.95641 4.41105 4.52938 4.56158 4.70660 4.91646 4.95129 5.04912 5.14040 5.15486 5.20418 5.28257 5.37729 5.46082 5.50181 5.52394 5.58281 5.66301 5.74305 5.77298 5.85623 5.91944 5.98269 6.01289 6.13059 6.34760 6.47278 6.55382 6.64172 7.12933 7.14489 7.42117 7.52442 7.85410 8.22889 8.60565 8.91917 9.52535 11.00821 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002919 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.022885 B = 9588.944354 C = 9928.004024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 H 0.076 0.924 4 C 0.061 3.939 5 N -0.545 5.545 6 C 0.064 3.936 7 C 0.011 3.989 8 H 0.099 0.901 9 C 0.256 3.744 10 N -0.480 5.480 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.066 3.934 21 C 0.047 3.953 22 H 0.087 0.913 23 C -0.145 4.145 24 N -0.510 5.510 25 C 0.009 3.991 26 C 0.411 3.589 27 F -0.177 7.177 28 F -0.190 7.190 29 F -0.177 7.177 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.123 0.877 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -1.808 23.514 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.052 4.052 3 H 0.094 0.906 4 C -0.068 4.068 5 N -0.269 5.269 6 C -0.064 4.064 7 C -0.011 4.011 8 H 0.117 0.883 9 C -0.061 4.061 10 N -0.156 5.156 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.062 4.062 21 C -0.060 4.060 22 H 0.104 0.896 23 C -0.203 4.203 24 N -0.233 5.233 25 C -0.122 4.122 26 C 0.354 3.646 27 F -0.159 7.159 28 F -0.172 7.172 29 F -0.158 7.158 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.141 0.859 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.619 -0.429 23.531 24.737 hybrid contribution -0.356 0.421 -0.983 1.127 sum -7.974 -0.008 22.548 23.916 Atomic orbital electron populations 1.21880 0.93498 1.02670 1.02249 1.22276 0.95781 0.98037 0.89056 0.90641 1.22246 0.87566 0.99804 0.97147 1.62151 1.08258 1.54185 1.02335 1.22215 1.00832 0.95713 0.87631 1.19241 0.98860 0.85837 0.97187 0.88341 1.28838 0.92820 0.94035 0.90390 1.80981 1.10714 1.12470 1.11470 1.19171 0.97572 0.95946 0.88023 1.21175 1.37331 1.06900 0.90896 0.92467 1.24948 0.94904 0.95033 0.99078 1.69944 1.39801 1.21022 1.22260 0.86545 0.78378 0.80506 0.82722 1.19661 1.20974 1.20855 1.22130 0.99932 0.95659 0.88476 1.22419 0.85943 1.01879 0.95803 0.89593 1.21858 1.01587 1.00832 0.95978 1.62412 1.09690 1.50732 1.00478 1.23877 1.04926 0.85185 0.98172 1.22597 0.75066 0.93474 0.73464 1.93146 1.83514 1.83393 1.55806 1.93178 1.89717 1.87686 1.46603 1.93076 1.30625 1.96762 1.95357 0.91586 0.92597 0.91319 0.89301 0.93537 0.90143 0.92637 0.95573 0.94459 0.92859 0.93835 0.90066 0.91483 0.92707 0.91597 0.85872 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.48 37.16 0.32 -0.93 16 2 C 0.06 0.60 1.91 -67.66 -0.13 0.47 16 3 H 0.08 0.97 5.50 -51.93 -0.29 0.69 16 4 C 0.06 0.73 4.71 -3.77 -0.02 0.71 16 5 N -0.55 -7.28 4.37 -234.47 -1.02 -8.30 16 6 C 0.06 0.94 4.33 -3.83 -0.02 0.93 16 7 C 0.01 0.20 2.15 -93.41 -0.20 0.00 16 8 H 0.10 1.70 6.39 -51.93 -0.33 1.36 16 9 C 0.26 5.39 13.64 -20.76 -0.28 5.11 16 10 N -0.48 -11.02 18.54 42.15 0.78 -10.24 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 12 C -0.52 -13.91 8.60 -34.44 -0.30 -14.21 16 13 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.07 0.74 4.89 -3.76 -0.02 0.72 16 21 C 0.05 0.47 1.95 -67.65 -0.13 0.34 16 22 H 0.09 1.04 5.11 -51.93 -0.27 0.78 16 23 C -0.14 -1.10 8.78 37.16 0.33 -0.77 16 24 N -0.51 -4.74 4.55 -218.57 -0.99 -5.74 16 25 C 0.01 0.07 4.90 -3.82 -0.02 0.05 16 26 C 0.41 3.96 3.01 37.16 0.11 4.07 16 27 F -0.18 -1.99 12.83 2.25 0.03 -1.96 16 28 F -0.19 -1.84 17.32 2.25 0.04 -1.80 16 29 F -0.18 -2.00 13.60 2.25 0.03 -1.96 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.42 5.48 -51.93 -0.28 0.14 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.12 6.33 -51.93 -0.33 0.79 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.37 6.24 -51.93 -0.32 0.04 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.12 0.71 6.28 -51.93 -0.33 0.38 16 46 H 0.12 0.69 5.94 -51.93 -0.31 0.38 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -30.55 365.03 -7.13 -37.67 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.62 Total: -3.44 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.58 Total: -1.32 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.50 Total: -48.95 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.10 Total: -5.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.55 -7.13 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934798414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.072 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds