Wall clock time and date at job start Tue Mar 31 2020 17:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50851 * 2 1 4 4 C 1.53046 * 109.49238 * 239.94207 * 2 1 3 5 5 N 1.46952 * 109.36874 * 181.63258 * 4 2 1 6 6 C 1.46898 * 111.00262 * 183.18625 * 5 4 2 7 7 C 1.52996 * 109.46882 * 67.76278 * 6 5 4 8 8 H 1.08993 * 109.47243 * 303.76092 * 7 6 5 9 9 C 1.47208 * 109.47245 * 63.76042 * 7 6 5 10 10 N 5.16384 * 132.57477 * 298.06495 * 2 1 3 11 11 C 1.52999 * 109.47151 * 183.75609 * 7 6 5 12 12 C 1.50699 * 109.47472 * 175.00053 * 11 7 6 13 13 H 1.08007 * 119.99684 * 0.02562 * 12 11 7 14 14 C 1.37876 * 120.00454 * 180.02562 * 12 11 7 15 15 N 1.31509 * 119.99797 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99952 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47428 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46850 * 120.00564 * 16 14 12 19 19 H 1.48496 * 109.47012 * 239.99841 * 16 14 12 20 20 C 1.46965 * 110.87917 * 59.31985 * 5 4 2 21 21 C 1.53056 * 109.36369 * 300.68282 * 20 5 4 22 22 H 1.09000 * 109.48547 * 298.41302 * 21 20 5 23 23 C 1.53001 * 109.48909 * 178.36950 * 21 20 5 24 24 N 1.46953 * 109.48531 * 120.04974 * 2 1 3 25 25 C 1.46899 * 111.00362 * 303.15802 * 24 2 1 26 26 C 1.53004 * 109.47119 * 301.95580 * 25 24 2 27 27 F 1.39903 * 109.46695 * 64.02008 * 26 25 24 28 28 F 1.39896 * 109.47202 * 184.01891 * 26 25 24 29 29 F 1.39903 * 109.47040 * 304.02443 * 26 25 24 30 30 H 1.08995 * 109.47177 * 176.14022 * 1 2 3 31 31 H 1.09000 * 109.47113 * 296.14446 * 1 2 3 32 32 H 1.09002 * 109.46863 * 56.14570 * 1 2 3 33 33 H 1.08999 * 109.48669 * 61.65983 * 4 2 1 34 34 H 1.09005 * 109.48639 * 301.60069 * 4 2 1 35 35 H 1.08998 * 109.46778 * 187.76372 * 6 5 4 36 36 H 1.08997 * 109.46822 * 307.76367 * 6 5 4 37 37 H 1.08996 * 109.47406 * 295.00221 * 11 7 6 38 38 H 1.09001 * 109.46961 * 55.00150 * 11 7 6 39 39 H 0.97000 * 120.00216 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.48632 * 60.64865 * 20 5 4 41 41 H 1.08995 * 109.48952 * 180.71672 * 20 5 4 42 42 H 1.09000 * 109.47105 * 59.99822 * 23 21 20 43 43 H 1.08993 * 109.46847 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46749 * 299.99807 * 23 21 20 45 45 H 1.08998 * 109.47149 * 61.95486 * 25 24 2 46 46 H 1.09002 * 109.47245 * 181.95840 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 -1.2487 5 7 3.5097 -0.7553 -1.2264 6 6 4.0412 -1.3753 -2.4474 7 6 3.7526 -0.4697 -3.6463 8 1 2.6814 -0.2785 -3.7077 9 6 4.4700 0.8052 -3.4822 10 7 5.0237 1.7890 -3.3555 11 6 4.2223 -1.1575 -4.9298 12 6 3.8283 -0.3222 -6.1206 13 1 3.2964 0.6067 -5.9763 14 6 4.1467 -0.7436 -7.3941 15 7 4.7939 -1.8749 -7.5698 16 14 3.6576 0.2916 -8.8701 17 1 2.9436 1.5083 -8.4067 18 1 4.8754 0.6889 -9.6214 19 1 2.7657 -0.4992 -9.7557 20 6 4.0000 -1.4491 -0.0271 21 6 3.4893 -0.7264 1.2217 22 1 3.8758 0.2926 1.2357 23 6 3.9643 -1.4698 2.4717 24 7 2.0202 -0.6937 1.1992 25 6 1.4887 -0.0738 2.4203 26 6 1.8913 1.4018 2.4599 27 9 1.2950 2.0767 1.3894 28 9 1.4642 1.9695 3.6651 29 9 3.2828 1.5083 2.3614 30 1 -0.3633 -1.0253 -0.0692 31 1 -0.3633 0.4528 0.9225 32 1 -0.3633 0.5725 -0.8535 33 1 1.7022 -0.1931 -2.1393 34 1 1.6545 -1.7419 -1.2625 35 1 5.1178 -1.5123 -2.3463 36 1 3.5645 -2.3435 -2.6004 37 1 5.3063 -1.2687 -4.9067 38 1 3.7578 -2.1406 -5.0060 39 1 5.0183 -2.1712 -8.4657 40 1 3.6360 -2.4765 -0.0271 41 1 5.0900 -1.4491 -0.0271 42 1 5.0539 -1.4955 2.4871 43 1 3.6001 -0.9552 3.3608 44 1 3.5769 -2.4886 2.4578 45 1 0.4017 -0.1541 2.4250 46 1 1.8946 -0.5847 3.2934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934798414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:47 Heat of formation + Delta-G solvation = -128.025652 kcal Electronic energy + Delta-G solvation = -30661.506953 eV Core-core repulsion = 26170.789443 eV Total energy + Delta-G solvation = -4490.717510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.27779 -48.77986 -48.69043 -40.87468 -38.58557 -36.68959 -35.43675 -34.57814 -33.55943 -31.39603 -28.86338 -28.49465 -27.64866 -26.13111 -24.30303 -23.57868 -22.53478 -22.31853 -21.17596 -19.72541 -19.53482 -18.52571 -18.26702 -17.94179 -17.04821 -16.89129 -16.78754 -16.42996 -15.79120 -15.71287 -15.41994 -15.33666 -15.05028 -14.85873 -14.80077 -14.75699 -14.45416 -14.19037 -14.17072 -13.86956 -13.73244 -13.68287 -13.34744 -13.20233 -13.05221 -12.97262 -12.75822 -12.63729 -12.54815 -12.47006 -12.40066 -12.34477 -12.02400 -11.65796 -11.62096 -11.48248 -11.30861 -11.02349 -10.55498 -9.54963 -9.20613 -8.19636 -6.27574 1.38628 1.42016 1.52272 1.79106 2.05501 2.13380 2.41259 2.47748 2.81849 2.90532 3.00896 3.15927 3.22849 3.34542 3.75636 3.85133 3.91028 4.18580 4.28230 4.34631 4.36152 4.38587 4.42391 4.46529 4.65796 4.69110 4.71796 4.79972 4.85499 4.88058 4.93355 4.97674 5.06187 5.07812 5.12808 5.31674 5.40748 5.46679 5.61441 5.77289 5.79890 5.84175 6.08346 6.18265 6.22786 6.82994 6.92818 7.41013 8.91448 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002919 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.022885 B = 9588.944354 C = 9928.004024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.059 3.941 3 H 0.051 0.949 4 C 0.059 3.941 5 N -0.561 5.561 6 C 0.076 3.924 7 C 0.021 3.979 8 H 0.114 0.886 9 C 0.267 3.733 10 N -0.516 5.516 11 C 0.039 3.961 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.947 3.053 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.066 3.934 21 C 0.048 3.952 22 H 0.064 0.936 23 C -0.138 4.138 24 N -0.505 5.505 25 C 0.014 3.986 26 C 0.406 3.594 27 F -0.189 7.189 28 F -0.191 7.191 29 F -0.189 7.189 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.001 0.999 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 -2.625 24.865 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.069 0.931 4 C -0.069 4.069 5 N -0.285 5.285 6 C -0.053 4.053 7 C 0.000 4.000 8 H 0.132 0.868 9 C -0.049 4.049 10 N -0.194 5.194 11 C 0.001 3.999 12 C -0.576 4.576 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.773 3.227 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.061 4.061 21 C -0.060 4.060 22 H 0.081 0.919 23 C -0.196 4.196 24 N -0.227 5.227 25 C -0.117 4.117 26 C 0.350 3.650 27 F -0.171 7.171 28 F -0.172 7.172 29 F -0.171 7.171 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.162 0.838 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.059 -1.245 24.898 26.524 hybrid contribution 0.101 0.706 -1.372 1.547 sum -8.957 -0.538 23.526 25.179 Atomic orbital electron populations 1.21847 0.91824 1.03339 1.02757 1.22188 0.97041 0.96498 0.89196 0.93128 1.22276 0.86717 1.00306 0.97563 1.62091 1.09254 1.54771 1.02402 1.22018 1.01010 0.95309 0.86958 1.19207 0.99090 0.84842 0.96895 0.86827 1.29365 0.92089 0.94150 0.89312 1.80976 1.11946 1.13737 1.12733 1.18980 0.95923 0.95838 0.89198 1.21561 1.36775 1.06967 0.92287 0.92977 1.25686 0.95124 0.96097 1.01731 1.70029 1.40934 1.22347 1.22915 0.85662 0.78025 0.79181 0.79824 1.19487 1.21172 1.19673 1.22180 0.99937 0.96044 0.87971 1.22381 0.86437 1.00824 0.96341 0.91851 1.21819 1.01789 1.01007 0.94993 1.62423 1.09164 1.50404 1.00735 1.24093 1.06238 0.83370 0.97972 1.23024 0.74445 0.94541 0.73039 1.93127 1.83633 1.83838 1.56482 1.93174 1.89643 1.87870 1.46550 1.93063 1.31717 1.96882 1.95411 0.90607 0.91433 0.91694 0.90371 0.92617 0.90435 0.90986 0.98023 0.94532 0.92698 0.92903 0.90244 0.91275 0.91576 0.90694 0.83767 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.48 71.98 0.61 -1.52 16 2 C 0.06 1.17 1.91 44.92 0.09 1.26 16 3 H 0.05 1.29 5.50 -2.39 -0.01 1.28 16 4 C 0.06 1.34 4.71 86.31 0.41 1.75 16 5 N -0.56 -14.43 4.37 -895.73 -3.91 -18.34 16 6 C 0.08 2.15 4.33 86.30 0.37 2.53 16 7 C 0.02 0.78 2.15 -12.60 -0.03 0.75 16 8 H 0.11 3.82 6.39 -2.39 -0.02 3.81 16 9 C 0.27 11.30 13.64 89.44 1.22 12.52 16 10 N -0.52 -24.03 18.54 20.01 0.37 -23.66 16 11 C 0.04 1.81 4.42 29.85 0.13 1.95 16 12 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16 13 H 0.05 2.77 7.59 -2.91 -0.02 2.74 16 14 C 0.01 0.69 5.46 84.66 0.46 1.15 16 15 N -0.92 -52.79 13.29 21.45 0.28 -52.51 16 16 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 C 0.07 1.39 4.89 86.31 0.42 1.81 16 21 C 0.05 0.88 1.95 44.92 0.09 0.97 16 22 H 0.06 1.50 5.11 -2.39 -0.01 1.49 16 23 C -0.14 -1.76 8.78 71.98 0.63 -1.13 16 24 N -0.50 -8.28 4.55 -845.41 -3.85 -12.13 16 25 C 0.01 0.16 4.90 86.30 0.42 0.59 16 26 C 0.41 7.29 3.01 71.98 0.22 7.51 16 27 F -0.19 -4.13 12.83 44.97 0.58 -3.55 16 28 F -0.19 -3.40 17.32 44.97 0.78 -2.63 16 29 F -0.19 -4.17 13.60 44.97 0.61 -3.55 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.86 5.48 -2.39 -0.01 0.85 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.91 6.33 -2.39 -0.02 1.89 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 2.25 8.00 -2.39 -0.02 2.23 16 36 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.69 6.24 -2.39 -0.01 0.68 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.14 1.17 6.28 -2.39 -0.01 1.15 16 46 H 0.15 1.12 5.94 -2.39 -0.01 1.11 16 Total: -1.00 -65.58 365.03 3.16 -62.42 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.00 Total: 6.58 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.26 Total: 1.80 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -7.10 Total: -106.63 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 1.97 Total: -9.73 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.58 3.16 -62.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934798414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.606 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds