Wall clock time and date at job start Tue Mar 31 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.64087 * 2 1 4 4 C 1.54337 * 111.00341 * 236.92575 * 2 1 3 5 5 N 1.47022 * 107.26574 * 219.60238 * 4 2 1 6 6 C 1.34779 * 125.64635 * 178.84906 * 5 4 2 7 7 O 1.21495 * 119.99902 * 359.71555 * 6 5 4 8 8 C 1.48334 * 119.99991 * 179.71356 * 6 5 4 9 9 N 1.31335 * 127.11996 * 359.96224 * 8 6 5 10 10 O 1.21251 * 111.48822 * 179.84519 * 9 8 6 11 11 C 1.33611 * 111.64265 * 359.59183 * 10 9 8 12 12 C 1.35060 * 106.59612 * 0.85351 * 11 10 9 13 13 C 1.50064 * 126.54727 * 178.84011 * 12 11 10 14 14 C 1.53332 * 109.00259 * 27.90992 * 13 12 11 15 15 C 1.52664 * 109.44782 * 271.39595 * 14 13 12 16 16 C 1.52620 * 110.92865 * 61.41560 * 15 14 13 17 17 C 1.50616 * 128.08522 * 181.12113 * 11 10 9 18 18 C 1.47424 * 108.70335 * 358.58294 * 5 4 2 19 19 C 1.54905 * 104.82914 * 24.36003 * 18 5 4 20 20 H 1.09001 * 111.00779 * 81.10594 * 19 18 5 21 21 N 1.46504 * 110.99942 * 204.91546 * 19 18 5 22 22 C 1.36933 * 119.99948 * 273.54474 * 21 19 18 23 23 H 1.07998 * 120.00168 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00045 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00318 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46686 * 90.00168 * 26 24 22 28 28 H 1.48494 * 109.47113 * 209.99970 * 26 24 22 29 29 H 1.48499 * 109.46863 * 330.00189 * 26 24 22 30 30 H 1.08997 * 109.47378 * 296.85177 * 1 2 3 31 31 H 1.09001 * 109.46938 * 56.85833 * 1 2 3 32 32 H 1.08999 * 109.47081 * 176.85390 * 1 2 3 33 33 H 1.09003 * 109.98977 * 100.12452 * 4 2 1 34 34 H 1.09003 * 109.77861 * 338.95424 * 4 2 1 35 35 H 1.08995 * 109.55290 * 268.04871 * 13 12 11 36 36 H 1.09007 * 109.62448 * 147.80714 * 13 12 11 37 37 H 1.08995 * 109.47823 * 151.40309 * 14 13 12 38 38 H 1.08998 * 109.47687 * 31.38411 * 14 13 12 39 39 H 1.08995 * 109.18724 * 301.04062 * 15 14 13 40 40 H 1.08997 * 109.18271 * 181.78758 * 15 14 13 41 41 H 1.08994 * 109.41902 * 273.54323 * 16 15 14 42 42 H 1.08996 * 109.41440 * 153.74495 * 16 15 14 43 43 H 1.09005 * 109.51735 * 346.47029 * 17 11 10 44 44 H 1.09000 * 109.51976 * 106.65577 * 17 11 10 45 45 H 1.08998 * 110.36243 * 143.19349 * 18 5 4 46 46 H 1.08999 * 110.36309 * 265.51633 * 18 5 4 47 47 H 0.97005 * 120.00136 * 93.54999 * 21 19 18 48 48 H 0.97001 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7863 -1.2074 5 7 3.2494 -1.5470 -0.7354 6 6 4.0004 -2.3784 -1.4846 7 8 3.7292 -2.5527 -2.6559 8 6 5.1582 -3.0806 -0.8789 9 7 5.5753 -2.9955 0.3635 10 8 6.5477 -3.6942 0.5544 11 6 6.9058 -4.3531 -0.5514 12 6 6.0417 -3.9796 -1.5199 13 6 6.0518 -4.4337 -2.9501 14 6 6.6758 -5.8322 -3.0256 15 6 8.1879 -5.7057 -3.1940 16 6 8.8109 -4.9859 -2.0011 17 6 8.0376 -5.3317 -0.7243 18 6 3.4652 -1.2447 0.6913 19 6 2.0790 -0.7935 1.2150 20 1 1.4471 -1.6531 1.4389 21 7 2.2175 0.0725 2.3885 22 6 2.3129 -0.4783 3.6385 23 1 2.2855 -1.5511 3.7594 24 6 2.4436 0.3423 4.7505 25 7 2.4755 1.6499 4.6034 26 14 2.5730 -0.4091 6.4559 27 1 4.0007 -0.6575 6.7803 28 1 1.9940 0.5257 7.4538 29 1 1.8272 -1.6928 6.4890 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0564 33 1 2.3848 -0.0959 -1.9951 34 1 1.3217 -1.4701 -1.5824 35 1 6.6402 -3.7389 -3.5493 36 1 5.0307 -4.4689 -3.3302 37 1 6.2592 -6.3707 -3.8768 38 1 6.4569 -6.3779 -2.1078 39 1 8.4013 -5.1434 -4.1030 40 1 8.6233 -6.7013 -3.2790 41 1 8.7731 -3.9094 -2.1673 42 1 9.8494 -5.2984 -1.8914 43 1 8.7063 -5.2706 0.1344 44 1 7.6365 -6.3421 -0.8037 45 1 3.7992 -2.1365 1.2216 46 1 4.1930 -0.4410 0.8028 47 1 2.2417 1.0362 2.2800 48 1 2.5665 2.2233 5.3804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939224228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:48 Heat of formation + Delta-G solvation = 32.840663 kcal Electronic energy + Delta-G solvation = -29431.250388 eV Core-core repulsion = 25489.365305 eV Total energy + Delta-G solvation = -3941.885083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.08774 -39.81299 -38.45846 -37.56351 -34.20581 -34.05402 -32.58471 -32.08615 -31.28625 -30.68832 -27.56839 -26.88391 -26.33328 -25.08237 -24.22835 -23.54482 -21.58502 -20.90801 -20.05403 -19.91370 -19.19734 -17.84647 -17.26453 -17.11104 -16.69989 -15.90926 -15.69584 -15.33243 -15.09771 -14.60318 -14.15105 -13.87532 -13.66813 -13.60884 -13.53114 -13.17297 -12.97722 -12.84732 -12.76925 -12.60311 -12.23717 -12.11628 -11.73426 -11.64200 -11.46785 -11.21306 -11.10270 -11.01303 -10.88125 -10.76000 -10.64943 -10.61491 -10.28263 -10.20137 -10.06563 -9.90411 -9.73157 -9.17581 -9.00313 -8.41958 -7.07548 -5.83598 -3.14171 1.18257 1.62861 2.81902 3.02213 3.26913 3.41412 3.46959 3.48007 3.98953 4.30162 4.42946 4.51580 4.53972 4.64592 4.70241 4.77930 4.94066 5.02877 5.05160 5.12915 5.19530 5.27370 5.40907 5.42942 5.50411 5.54231 5.62037 5.64540 5.64760 5.73946 5.76424 5.82959 5.87438 5.90197 5.91164 5.99152 6.01922 6.18138 6.21323 6.25643 6.42406 6.47208 6.53754 6.60813 6.87586 7.61773 7.66459 7.98665 8.23415 8.33803 9.45958 9.98611 10.34114 11.38395 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.003282 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.716679 B = 8528.275314 C =10304.687582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.608 3.392 7 O -0.537 6.537 8 C -0.018 4.018 9 N -0.317 5.317 10 O 0.126 5.874 11 C -0.043 4.043 12 C -0.148 4.148 13 C -0.045 4.045 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.117 4.117 17 C -0.037 4.037 18 C 0.071 3.929 19 C 0.178 3.822 20 H 0.065 0.935 21 N -0.709 5.709 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.387 0.613 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.639 -13.760 -15.998 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.104 0.896 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.394 3.606 7 O -0.414 6.414 8 C -0.177 4.177 9 N -0.017 5.017 10 O 0.051 5.949 11 C -0.106 4.106 12 C -0.153 4.153 13 C -0.083 4.083 14 C -0.163 4.163 15 C -0.160 4.160 16 C -0.155 4.155 17 C -0.075 4.075 18 C -0.054 4.054 19 C 0.065 3.935 20 H 0.083 0.917 21 N -0.349 5.349 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.222 0.778 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.029 -13.241 -15.427 22.244 hybrid contribution 0.309 -0.170 0.430 0.557 sum 9.338 -13.411 -14.996 22.180 Atomic orbital electron populations 1.21661 0.93718 1.01606 1.02139 1.22499 0.96565 0.99881 0.94423 0.89644 1.22051 0.86983 0.94341 0.97063 1.48391 1.29138 1.42433 1.12992 1.16490 0.80424 0.78805 0.84896 1.90732 1.70641 1.64788 1.15288 1.23078 1.00750 1.02856 0.90989 1.74708 0.98977 1.10473 1.17553 1.84826 1.33864 1.42096 1.34144 1.24106 1.00554 1.00176 0.85767 1.20615 0.95688 1.00105 0.98904 1.19972 1.03182 0.96013 0.89097 1.21755 0.95178 0.96666 1.02660 1.21555 0.95421 1.00749 0.98248 1.21587 0.99068 1.01657 0.93174 1.20247 0.92073 0.95409 0.99786 1.23745 1.02228 1.01745 0.77694 1.21371 0.91732 0.93671 0.86707 0.91745 1.42275 1.86865 1.05071 1.00665 1.19227 1.42949 0.91897 0.83560 0.91029 1.24750 1.02358 0.95332 0.97997 1.69658 1.56695 1.02021 1.29387 0.86188 0.77753 0.77981 0.84255 1.21551 1.21734 1.20661 0.91205 0.93106 0.92862 0.91570 0.91242 0.90177 0.89103 0.91097 0.91191 0.91517 0.91714 0.91243 0.90463 0.89258 0.88273 0.89838 0.91120 0.77835 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.17 37.16 0.34 -1.59 16 2 C -0.11 -1.85 3.15 -88.78 -0.28 -2.13 16 3 H 0.09 1.42 8.00 -51.93 -0.42 1.00 16 4 C 0.12 1.85 6.48 -3.06 -0.02 1.83 16 5 N -0.60 -10.55 3.33 -171.44 -0.57 -11.12 16 6 C 0.61 10.90 7.88 -12.10 -0.10 10.80 16 7 O -0.54 -10.12 15.83 5.37 0.09 -10.04 16 8 C -0.02 -0.30 7.01 -82.72 -0.58 -0.88 16 9 N -0.32 -5.39 9.35 33.31 0.31 -5.08 16 10 O 0.13 1.82 11.18 18.20 0.20 2.03 16 11 C -0.04 -0.49 6.64 -35.48 -0.24 -0.73 16 12 C -0.15 -1.96 5.73 -104.85 -0.60 -2.56 16 13 C -0.05 -0.49 5.37 -28.02 -0.15 -0.64 16 14 C -0.13 -0.95 5.56 -26.73 -0.15 -1.10 16 15 C -0.12 -0.72 5.63 -27.10 -0.15 -0.87 16 16 C -0.12 -0.73 5.63 -26.81 -0.15 -0.88 16 17 C -0.04 -0.27 5.55 -27.81 -0.15 -0.42 16 18 C 0.07 1.38 5.87 -2.53 -0.01 1.36 16 19 C 0.18 3.51 3.13 -65.78 -0.21 3.30 16 20 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 21 N -0.71 -17.18 5.28 -51.35 -0.27 -17.45 16 22 C -0.25 -6.65 9.98 -15.06 -0.15 -6.80 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 26 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 35 H 0.08 0.83 7.82 -51.93 -0.41 0.42 16 36 H 0.09 1.13 7.07 -51.92 -0.37 0.77 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.54 5.68 -51.93 -0.29 0.24 16 39 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.58 6.36 -51.93 -0.33 0.25 16 45 H 0.08 1.70 6.24 -51.93 -0.32 1.37 16 46 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.92 7.71 -40.82 -0.31 9.61 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -31.34 377.11 -9.00 -40.34 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.45 Total: 6.87 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.69 Total: -1.62 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.19 Total: -60.38 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.29 Total: -8.01 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.34 -9.00 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939224228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.179 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds