Wall clock time and date at job start Tue Mar 31 2020 17:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.64087 * 2 1 4 4 C 1.54337 * 111.00341 * 236.92575 * 2 1 3 5 5 N 1.47022 * 107.26574 * 219.60238 * 4 2 1 6 6 C 1.34779 * 125.64635 * 178.84906 * 5 4 2 7 7 O 1.21495 * 119.99902 * 359.71555 * 6 5 4 8 8 C 1.48334 * 119.99991 * 179.71356 * 6 5 4 9 9 N 1.31335 * 127.11996 * 359.96224 * 8 6 5 10 10 O 1.21251 * 111.48822 * 179.84519 * 9 8 6 11 11 C 1.33611 * 111.64265 * 359.59183 * 10 9 8 12 12 C 1.35060 * 106.59612 * 0.85351 * 11 10 9 13 13 C 1.50064 * 126.54727 * 178.84011 * 12 11 10 14 14 C 1.53332 * 109.00259 * 27.90992 * 13 12 11 15 15 C 1.52664 * 109.44782 * 271.39595 * 14 13 12 16 16 C 1.52620 * 110.92865 * 61.41560 * 15 14 13 17 17 C 1.50616 * 128.08522 * 181.12113 * 11 10 9 18 18 C 1.47424 * 108.70335 * 358.58294 * 5 4 2 19 19 C 1.54905 * 104.82914 * 24.36003 * 18 5 4 20 20 H 1.09001 * 111.00779 * 81.10594 * 19 18 5 21 21 N 1.46504 * 110.99942 * 204.91546 * 19 18 5 22 22 C 1.36933 * 119.99948 * 273.54474 * 21 19 18 23 23 H 1.07998 * 120.00168 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00045 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00318 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46686 * 90.00168 * 26 24 22 28 28 H 1.48494 * 109.47113 * 209.99970 * 26 24 22 29 29 H 1.48499 * 109.46863 * 330.00189 * 26 24 22 30 30 H 1.08997 * 109.47378 * 296.85177 * 1 2 3 31 31 H 1.09001 * 109.46938 * 56.85833 * 1 2 3 32 32 H 1.08999 * 109.47081 * 176.85390 * 1 2 3 33 33 H 1.09003 * 109.98977 * 100.12452 * 4 2 1 34 34 H 1.09003 * 109.77861 * 338.95424 * 4 2 1 35 35 H 1.08995 * 109.55290 * 268.04871 * 13 12 11 36 36 H 1.09007 * 109.62448 * 147.80714 * 13 12 11 37 37 H 1.08995 * 109.47823 * 151.40309 * 14 13 12 38 38 H 1.08998 * 109.47687 * 31.38411 * 14 13 12 39 39 H 1.08995 * 109.18724 * 301.04062 * 15 14 13 40 40 H 1.08997 * 109.18271 * 181.78758 * 15 14 13 41 41 H 1.08994 * 109.41902 * 273.54323 * 16 15 14 42 42 H 1.08996 * 109.41440 * 153.74495 * 16 15 14 43 43 H 1.09005 * 109.51735 * 346.47029 * 17 11 10 44 44 H 1.09000 * 109.51976 * 106.65577 * 17 11 10 45 45 H 1.08998 * 110.36243 * 143.19349 * 18 5 4 46 46 H 1.08999 * 110.36309 * 265.51633 * 18 5 4 47 47 H 0.97005 * 120.00136 * 93.54999 * 21 19 18 48 48 H 0.97001 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7863 -1.2074 5 7 3.2494 -1.5470 -0.7354 6 6 4.0004 -2.3784 -1.4846 7 8 3.7292 -2.5527 -2.6559 8 6 5.1582 -3.0806 -0.8789 9 7 5.5753 -2.9955 0.3635 10 8 6.5477 -3.6942 0.5544 11 6 6.9058 -4.3531 -0.5514 12 6 6.0417 -3.9796 -1.5199 13 6 6.0518 -4.4337 -2.9501 14 6 6.6758 -5.8322 -3.0256 15 6 8.1879 -5.7057 -3.1940 16 6 8.8109 -4.9859 -2.0011 17 6 8.0376 -5.3317 -0.7243 18 6 3.4652 -1.2447 0.6913 19 6 2.0790 -0.7935 1.2150 20 1 1.4471 -1.6531 1.4389 21 7 2.2175 0.0725 2.3885 22 6 2.3129 -0.4783 3.6385 23 1 2.2855 -1.5511 3.7594 24 6 2.4436 0.3423 4.7505 25 7 2.4755 1.6499 4.6034 26 14 2.5730 -0.4091 6.4559 27 1 4.0007 -0.6575 6.7803 28 1 1.9940 0.5257 7.4538 29 1 1.8272 -1.6928 6.4890 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0564 33 1 2.3848 -0.0959 -1.9951 34 1 1.3217 -1.4701 -1.5824 35 1 6.6402 -3.7389 -3.5493 36 1 5.0307 -4.4689 -3.3302 37 1 6.2592 -6.3707 -3.8768 38 1 6.4569 -6.3779 -2.1078 39 1 8.4013 -5.1434 -4.1030 40 1 8.6233 -6.7013 -3.2790 41 1 8.7731 -3.9094 -2.1673 42 1 9.8494 -5.2984 -1.8914 43 1 8.7063 -5.2706 0.1344 44 1 7.6365 -6.3421 -0.8037 45 1 3.7992 -2.1365 1.2216 46 1 4.1930 -0.4410 0.8028 47 1 2.2417 1.0362 2.2800 48 1 2.5665 2.2233 5.3804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939224228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:47 Heat of formation + Delta-G solvation = 14.573725 kcal Electronic energy + Delta-G solvation = -29432.042502 eV Core-core repulsion = 25489.365305 eV Total energy + Delta-G solvation = -3942.677197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.23999 -41.25474 -39.32006 -38.88349 -35.97214 -35.26407 -34.01036 -32.91795 -32.59305 -32.11995 -29.27864 -28.14536 -27.16556 -26.02384 -25.79274 -24.94903 -23.04620 -22.03620 -21.43446 -20.66053 -20.39415 -19.16833 -19.00543 -18.35081 -17.96310 -17.38493 -16.90729 -16.35630 -16.32664 -15.73827 -15.65895 -15.41915 -14.79336 -14.65488 -14.59446 -14.39527 -14.34602 -14.27100 -14.12660 -13.42828 -13.38295 -13.13033 -13.04569 -12.88261 -12.87424 -12.73026 -12.26609 -12.20398 -12.14996 -12.06110 -11.80368 -11.76230 -11.64585 -11.45296 -11.42096 -11.37406 -11.19019 -10.98096 -10.12974 -9.88945 -9.10301 -7.98121 -5.28481 -0.02027 0.58924 1.46513 1.48104 1.55577 1.58522 1.91024 1.98935 2.52872 2.75119 3.25649 3.32868 3.56367 3.62620 3.70289 3.85529 3.88596 3.93484 4.00506 4.10242 4.13138 4.24368 4.26360 4.37000 4.39935 4.43212 4.53635 4.58008 4.72826 4.80520 4.81502 4.84758 4.88074 4.93205 5.02632 5.04423 5.07019 5.08763 5.17203 5.27000 5.28477 5.34196 5.40556 5.42982 5.49682 5.52610 6.16076 6.22624 6.68639 7.02111 7.30368 7.99188 8.25325 9.24484 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.003282 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.716679 B = 8528.275314 C =10304.687582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.600 5.600 6 C 0.605 3.395 7 O -0.549 6.549 8 C -0.047 4.047 9 N -0.351 5.351 10 O 0.124 5.876 11 C -0.024 4.024 12 C -0.159 4.159 13 C -0.043 4.043 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.038 4.038 18 C 0.091 3.909 19 C 0.173 3.827 20 H 0.061 0.939 21 N -0.717 5.717 22 C -0.245 4.245 23 H 0.073 0.927 24 C -0.066 4.066 25 N -0.964 5.964 26 Si 0.969 3.031 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.270 1.270 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.378 0.622 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.759 -16.030 -17.078 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.333 5.333 6 C 0.392 3.608 7 O -0.427 6.427 8 C -0.203 4.203 9 N -0.052 5.052 10 O 0.049 5.951 11 C -0.088 4.088 12 C -0.165 4.165 13 C -0.080 4.080 14 C -0.157 4.157 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.035 4.035 19 C 0.062 3.938 20 H 0.079 0.921 21 N -0.357 5.357 22 C -0.376 4.376 23 H 0.091 0.909 24 C -0.259 4.259 25 N -0.614 5.614 26 Si 0.798 3.202 27 H -0.215 1.215 28 H -0.220 1.220 29 H -0.195 1.195 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.211 0.789 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.132 -15.542 -16.547 24.860 hybrid contribution 0.019 0.470 0.673 0.821 sum 10.151 -15.072 -15.874 24.129 Atomic orbital electron populations 1.21618 0.91924 1.02498 1.02442 1.22415 0.97961 0.99118 0.92673 0.90027 1.22162 0.86642 0.94595 0.96857 1.48410 1.29831 1.42818 1.12199 1.16727 0.80681 0.78603 0.84807 1.90710 1.71145 1.65228 1.15634 1.23195 1.01311 1.04169 0.91655 1.74687 1.00291 1.12013 1.18163 1.84772 1.33134 1.41925 1.35297 1.24956 1.00599 0.99170 0.84063 1.20952 0.95407 0.99771 1.00341 1.20018 1.02305 0.98235 0.87450 1.21753 0.96409 0.94300 1.03273 1.21552 0.93910 1.02036 0.98128 1.21617 1.00362 1.00664 0.92627 1.20594 0.90856 0.94891 1.01179 1.23282 1.01069 1.00375 0.78805 1.21491 0.92034 0.93553 0.86708 0.92127 1.42344 1.87037 1.05029 1.01240 1.19535 1.41286 0.92009 0.84795 0.90910 1.25502 1.03160 0.95778 1.01466 1.69799 1.58528 1.03157 1.29933 0.85211 0.77535 0.77480 0.79963 1.21539 1.22001 1.19469 0.93096 0.90255 0.91992 0.90309 0.89843 0.90091 0.91283 0.89983 0.91022 0.91359 0.89434 0.93057 0.87872 0.87389 0.86115 0.91072 0.93144 0.78906 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.17 71.98 0.66 -2.85 16 2 C -0.10 -3.28 3.15 -9.60 -0.03 -3.31 16 3 H 0.08 2.71 8.00 -2.39 -0.02 2.69 16 4 C 0.12 3.63 6.48 86.73 0.56 4.19 16 5 N -0.60 -21.48 3.33 -814.62 -2.71 -24.19 16 6 C 0.60 22.08 7.88 86.93 0.68 22.77 16 7 O -0.55 -20.84 15.83 -3.70 -0.06 -20.90 16 8 C -0.05 -1.58 7.01 42.69 0.30 -1.28 16 9 N -0.35 -12.29 9.35 -49.03 -0.46 -12.75 16 10 O 0.12 3.60 11.18 75.19 0.84 4.44 16 11 C -0.02 -0.53 6.64 24.93 0.17 -0.36 16 12 C -0.16 -4.17 5.73 -20.01 -0.11 -4.29 16 13 C -0.04 -0.89 5.37 29.76 0.16 -0.73 16 14 C -0.12 -1.53 5.56 30.59 0.17 -1.36 16 15 C -0.12 -1.00 5.63 30.36 0.17 -0.83 16 16 C -0.12 -1.06 5.63 30.54 0.17 -0.89 16 17 C -0.04 -0.42 5.55 29.90 0.17 -0.26 16 18 C 0.09 3.61 5.87 86.85 0.51 4.12 16 19 C 0.17 6.95 3.13 46.38 0.15 7.10 16 20 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 21 N -0.72 -35.63 5.28 -316.38 -1.67 -37.30 16 22 C -0.24 -13.46 9.98 84.03 0.84 -12.62 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 25 N -0.96 -58.17 13.06 21.65 0.28 -57.89 16 26 Si 0.97 46.01 29.55 68.60 2.03 48.03 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.34 7.78 -2.39 -0.02 2.32 16 35 H 0.08 1.64 7.82 -2.39 -0.02 1.62 16 36 H 0.07 1.74 7.07 -2.38 -0.02 1.72 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.90 5.68 -2.39 -0.01 0.88 16 39 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.05 0.68 7.79 -2.39 -0.02 0.66 16 42 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.12 0.94 6.36 -2.39 -0.02 0.92 16 45 H 0.07 3.01 6.24 -2.39 -0.01 3.00 16 46 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.38 20.00 7.71 -92.70 -0.71 19.28 16 48 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -69.63 377.11 3.55 -66.09 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.26 Total: 28.36 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.03 Total: 6.09 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -4.55 Total: -132.12 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.78 Total: -16.46 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -69.63 3.55 -66.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939224228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.661 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds