Wall clock time and date at job start Tue Mar 31 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47165 * 2 1 4 4 C 1.50697 * 109.47516 * 239.99955 * 2 1 3 5 5 C 1.38357 * 119.40750 * 84.99237 * 4 2 1 6 6 C 1.38337 * 119.45582 * 179.97438 * 5 4 2 7 7 C 1.39991 * 118.35286 * 0.02562 * 6 5 4 8 8 C 1.47514 * 120.60074 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99997 * 216.17277 * 8 7 6 10 10 N 1.34781 * 120.00029 * 36.16322 * 8 7 6 11 11 C 1.47429 * 125.64594 * 4.90970 * 10 8 7 12 12 C 1.55128 * 104.72232 * 155.81338 * 11 10 8 13 13 H 1.09005 * 111.22370 * 279.18017 * 12 11 10 14 14 N 1.46497 * 110.91021 * 155.27465 * 12 11 10 15 15 C 1.36941 * 119.99870 * 92.97057 * 14 12 11 16 16 H 1.07995 * 119.99834 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99817 * 180.02562 * 15 14 12 18 18 N 1.31613 * 119.99911 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99919 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47371 * 89.99960 * 19 17 15 21 21 H 1.48505 * 109.46930 * 209.99943 * 19 17 15 22 22 H 1.48499 * 109.47179 * 329.99601 * 19 17 15 23 23 C 1.55155 * 101.48582 * 37.29496 * 12 11 10 24 24 H 1.08998 * 110.72092 * 82.69325 * 23 12 11 25 25 C 1.53000 * 110.87488 * 205.89950 * 23 12 11 26 26 C 1.47017 * 125.64828 * 185.21186 * 10 8 7 27 27 C 1.40282 * 118.80387 * 0.02562 * 7 6 5 28 28 O 1.35426 * 119.80079 * 180.02562 * 27 7 6 29 29 N 1.31880 * 119.40397 * 264.72929 * 4 2 1 30 30 H 1.08996 * 109.46914 * 300.00109 * 1 2 3 31 31 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47062 * 60.00350 * 1 2 3 33 33 H 1.09006 * 109.47523 * 119.99610 * 2 1 3 34 34 H 1.08995 * 109.46895 * 59.99760 * 3 2 1 35 35 H 1.09000 * 109.46770 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.46581 * 300.00187 * 3 2 1 37 37 H 1.07999 * 120.27654 * 359.96831 * 5 4 2 38 38 H 1.07997 * 120.82309 * 179.97438 * 6 5 4 39 39 H 1.08992 * 110.36470 * 274.74286 * 11 10 8 40 40 H 1.09005 * 110.36874 * 37.06569 * 11 10 8 41 41 H 0.97002 * 120.00091 * 272.98141 * 14 12 11 42 42 H 0.97002 * 119.99841 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.47253 * 175.06307 * 25 23 12 44 44 H 1.08995 * 109.47178 * 295.06517 * 25 23 12 45 45 H 1.09008 * 109.46945 * 55.06412 * 25 23 12 46 46 H 1.08997 * 109.88348 * 300.44463 * 26 10 8 47 47 H 1.08997 * 109.88571 * 61.45880 * 26 10 8 48 48 H 0.96697 * 114.00173 * 89.99905 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.1597 -0.0083 -2.4158 6 6 2.6213 -0.6593 -3.5458 7 6 2.9447 -2.0177 -3.4450 8 6 3.4408 -2.7606 -4.6189 9 8 3.1205 -3.9220 -4.7832 10 7 4.2489 -2.1519 -5.5095 11 6 4.7956 -0.7887 -5.3819 12 6 6.0793 -0.7957 -6.2529 13 1 6.9170 -1.2429 -5.7175 14 7 6.4113 0.5574 -6.7057 15 6 7.2749 1.3308 -5.9766 16 1 7.7114 0.9430 -5.0681 17 6 7.5890 2.6131 -6.4054 18 7 8.4194 3.3562 -5.7050 19 14 6.8333 3.2839 -7.9765 20 1 5.5563 3.9715 -7.6573 21 1 7.7716 4.2488 -8.6043 22 1 6.5714 2.1649 -8.9169 23 6 5.6400 -1.6884 -7.4434 24 1 5.0842 -1.1056 -8.1779 25 6 6.8492 -2.3636 -8.0938 26 6 4.7260 -2.7350 -6.7719 27 6 2.7873 -2.6600 -2.2079 28 8 3.0946 -3.9734 -2.0875 29 7 2.3478 -1.9888 -1.1565 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.9008 1.0393 -2.4587 38 1 2.7288 -0.1329 -4.4826 39 1 4.0819 -0.0569 -5.7600 40 1 5.0442 -0.5754 -4.3423 41 1 6.0194 0.9056 -7.5218 42 1 8.6386 4.2524 -6.0045 43 1 6.5087 -3.0508 -8.8682 44 1 7.4931 -1.6050 -8.5388 45 1 7.4073 -2.9159 -7.3376 46 1 5.2907 -3.6451 -6.5697 47 1 3.8789 -2.9608 -7.4196 48 1 4.0131 -4.1411 -1.8361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939262035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:02 Heat of formation + Delta-G solvation = -26.063741 kcal Electronic energy + Delta-G solvation = -29273.956371 eV Core-core repulsion = 25329.517002 eV Total energy + Delta-G solvation = -3944.439370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08108 -39.62084 -37.93639 -37.28631 -35.28323 -34.29652 -33.15641 -32.15750 -31.13576 -29.87876 -28.05044 -27.42050 -26.59739 -24.80248 -23.78617 -23.38670 -21.71130 -20.84729 -20.34346 -19.77607 -18.41890 -17.70260 -17.24790 -17.03480 -16.30898 -16.04341 -15.48606 -15.21680 -14.55287 -14.40904 -14.20416 -13.94395 -13.85958 -13.62147 -13.31412 -13.23537 -13.10873 -12.89140 -12.71316 -12.47659 -12.29868 -12.11729 -11.93121 -11.84792 -11.65544 -11.49208 -11.39521 -11.22454 -11.14015 -10.87283 -10.74447 -10.44936 -10.16417 -10.08022 -9.97263 -9.74060 -9.49382 -9.12750 -8.96698 -8.48685 -7.48805 -5.93056 -3.31739 0.53133 0.99692 2.75119 2.96695 3.25293 3.27813 3.31995 3.35231 3.59749 4.20038 4.41068 4.43913 4.49659 4.75247 4.81186 4.83154 4.91515 4.94203 4.95817 5.02276 5.26107 5.32545 5.35611 5.38646 5.42652 5.53955 5.56338 5.59680 5.63719 5.66781 5.69252 5.77355 5.78563 5.92525 5.97747 5.98487 6.03499 6.05724 6.18753 6.23235 6.26647 6.35933 6.44561 6.63667 7.36994 7.57556 7.72520 7.80455 8.20470 8.25281 9.01414 9.73441 9.91215 11.24411 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.003872 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.659205 B = 7229.104827 C = 9380.586804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.150 4.150 4 C 0.179 3.821 5 C -0.185 4.185 6 C -0.023 4.023 7 C -0.199 4.199 8 C 0.576 3.424 9 O -0.527 6.527 10 N -0.610 5.610 11 C 0.070 3.930 12 C 0.183 3.817 13 H 0.078 0.922 14 N -0.733 5.733 15 C -0.255 4.255 16 H 0.092 0.908 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.118 4.118 24 H 0.082 0.918 25 C -0.135 4.135 26 C 0.118 3.882 27 C 0.365 3.635 28 O -0.464 6.464 29 N -0.506 5.506 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.364 0.636 42 H 0.262 0.738 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 -7.110 6.067 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.208 4.208 4 C 0.041 3.959 5 C -0.205 4.205 6 C -0.049 4.049 7 C -0.205 4.205 8 C 0.363 3.637 9 O -0.404 6.404 10 N -0.344 5.344 11 C -0.056 4.056 12 C 0.071 3.929 13 H 0.096 0.904 14 N -0.374 5.374 15 C -0.385 4.385 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.574 5.574 19 Si 0.712 3.288 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.138 4.138 24 H 0.100 0.900 25 C -0.192 4.192 26 C -0.005 4.005 27 C 0.185 3.815 28 O -0.271 6.271 29 N -0.225 5.225 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.198 0.802 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -13.082 -8.250 6.794 16.893 hybrid contribution 0.079 1.147 -1.779 2.119 sum -13.002 -7.103 5.014 15.642 Atomic orbital electron populations 1.21808 0.93326 1.02442 1.02363 1.20150 0.96354 0.95667 0.94691 1.21961 1.01874 0.94319 1.02611 1.21172 0.91649 0.88165 0.94959 1.21965 1.03405 1.02315 0.92779 1.21967 0.91335 0.91911 0.99707 1.20960 1.08507 0.95117 0.95942 1.17521 0.78575 0.85849 0.81732 1.90811 1.58173 1.15903 1.75531 1.48392 1.47767 1.17300 1.20926 1.23640 0.97856 0.81558 1.02563 1.21383 0.93547 0.86095 0.91852 0.90376 1.42643 1.54653 1.12136 1.27978 1.19053 1.18784 0.95015 1.05615 0.89036 1.24666 0.98935 0.96615 0.98208 1.69693 1.37737 1.10268 1.39668 0.86604 0.78976 0.78886 0.84348 1.20954 1.21586 1.20184 1.22573 0.96525 0.96481 0.98238 0.89986 1.21663 0.97015 1.00346 1.00212 1.21983 0.97417 0.96768 0.84294 1.19031 0.91661 0.83994 0.86833 1.84771 1.34170 1.17329 1.90789 1.67063 1.14421 1.09038 1.31990 0.91618 0.92262 0.92296 0.88932 0.91593 0.91878 0.91828 0.83511 0.83303 0.91305 0.90715 0.80213 0.92830 0.93030 0.91485 0.92501 0.91231 0.91794 0.74066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.05 -0.45 3.23 -91.77 -0.30 -0.74 16 3 C -0.15 -1.15 8.61 37.16 0.32 -0.83 16 4 C 0.18 2.12 5.79 -82.53 -0.48 1.64 16 5 C -0.18 -2.08 9.15 -39.50 -0.36 -2.44 16 6 C -0.02 -0.30 8.29 -38.89 -0.32 -0.62 16 7 C -0.20 -2.92 5.44 -104.69 -0.57 -3.49 16 8 C 0.58 9.31 7.37 -12.48 -0.09 9.22 16 9 O -0.53 -10.02 16.34 -11.90 -0.19 -10.21 16 10 N -0.61 -9.08 3.32 -171.61 -0.57 -9.65 16 11 C 0.07 1.06 4.92 -2.41 -0.01 1.05 16 12 C 0.18 3.08 3.18 -65.67 -0.21 2.87 16 13 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 14 N -0.73 -15.20 5.04 -51.24 -0.26 -15.45 16 15 C -0.26 -6.50 10.44 -15.06 -0.16 -6.66 16 16 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 18 N -0.93 -27.31 13.97 55.49 0.78 -26.53 16 19 Si 0.88 20.36 27.74 -169.99 -4.71 15.65 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -5.93 6.52 56.52 0.37 -5.57 16 23 C -0.12 -1.64 3.18 -88.78 -0.28 -1.92 16 24 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 25 C -0.13 -1.72 9.14 37.16 0.34 -1.38 16 26 C 0.12 1.62 6.47 -3.06 -0.02 1.60 16 27 C 0.36 5.39 7.74 -16.61 -0.13 5.26 16 28 O -0.46 -6.61 12.24 -35.15 -0.43 -7.04 16 29 N -0.51 -7.10 10.28 -9.21 -0.09 -7.20 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.45 6.47 -51.93 -0.34 0.11 16 37 H 0.15 1.30 6.28 -52.49 -0.33 0.97 16 38 H 0.15 1.75 5.81 -52.49 -0.30 1.44 16 39 H 0.07 1.02 6.94 -51.93 -0.36 0.66 16 40 H 0.07 1.18 7.24 -51.93 -0.38 0.80 16 41 H 0.36 7.45 5.62 -40.82 -0.23 7.22 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 46 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.40 3.86 9.06 45.56 0.41 4.27 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -32.63 386.32 -8.27 -40.90 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.58 Total: 10.68 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.02 Total: 3.04 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.15 Total: -58.83 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.62 Total: -17.25 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.71 Total: 15.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.63 -8.27 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939262035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.835 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds