Wall clock time and date at job start Tue Mar 31 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47165 * 2 1 4 4 C 1.50697 * 109.47516 * 239.99955 * 2 1 3 5 5 C 1.38357 * 119.40750 * 84.99237 * 4 2 1 6 6 C 1.38337 * 119.45582 * 179.97438 * 5 4 2 7 7 C 1.39991 * 118.35286 * 0.02562 * 6 5 4 8 8 C 1.47514 * 120.60074 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99997 * 216.17277 * 8 7 6 10 10 N 1.34781 * 120.00029 * 36.16322 * 8 7 6 11 11 C 1.47429 * 125.64594 * 4.90970 * 10 8 7 12 12 C 1.55128 * 104.72232 * 155.81338 * 11 10 8 13 13 H 1.09005 * 111.22370 * 279.18017 * 12 11 10 14 14 N 1.46497 * 110.91021 * 155.27465 * 12 11 10 15 15 C 1.36941 * 119.99870 * 92.97057 * 14 12 11 16 16 H 1.07995 * 119.99834 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99817 * 180.02562 * 15 14 12 18 18 N 1.31613 * 119.99911 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99919 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47371 * 89.99960 * 19 17 15 21 21 H 1.48505 * 109.46930 * 209.99943 * 19 17 15 22 22 H 1.48499 * 109.47179 * 329.99601 * 19 17 15 23 23 C 1.55155 * 101.48582 * 37.29496 * 12 11 10 24 24 H 1.08998 * 110.72092 * 82.69325 * 23 12 11 25 25 C 1.53000 * 110.87488 * 205.89950 * 23 12 11 26 26 C 1.47017 * 125.64828 * 185.21186 * 10 8 7 27 27 C 1.40282 * 118.80387 * 0.02562 * 7 6 5 28 28 O 1.35426 * 119.80079 * 180.02562 * 27 7 6 29 29 N 1.31880 * 119.40397 * 264.72929 * 4 2 1 30 30 H 1.08996 * 109.46914 * 300.00109 * 1 2 3 31 31 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47062 * 60.00350 * 1 2 3 33 33 H 1.09006 * 109.47523 * 119.99610 * 2 1 3 34 34 H 1.08995 * 109.46895 * 59.99760 * 3 2 1 35 35 H 1.09000 * 109.46770 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.46581 * 300.00187 * 3 2 1 37 37 H 1.07999 * 120.27654 * 359.96831 * 5 4 2 38 38 H 1.07997 * 120.82309 * 179.97438 * 6 5 4 39 39 H 1.08992 * 110.36470 * 274.74286 * 11 10 8 40 40 H 1.09005 * 110.36874 * 37.06569 * 11 10 8 41 41 H 0.97002 * 120.00091 * 272.98141 * 14 12 11 42 42 H 0.97002 * 119.99841 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.47253 * 175.06307 * 25 23 12 44 44 H 1.08995 * 109.47178 * 295.06517 * 25 23 12 45 45 H 1.09008 * 109.46945 * 55.06412 * 25 23 12 46 46 H 1.08997 * 109.88348 * 300.44463 * 26 10 8 47 47 H 1.08997 * 109.88571 * 61.45880 * 26 10 8 48 48 H 0.96697 * 114.00173 * 89.99905 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.1597 -0.0083 -2.4158 6 6 2.6213 -0.6593 -3.5458 7 6 2.9447 -2.0177 -3.4450 8 6 3.4408 -2.7606 -4.6189 9 8 3.1205 -3.9220 -4.7832 10 7 4.2489 -2.1519 -5.5095 11 6 4.7956 -0.7887 -5.3819 12 6 6.0793 -0.7957 -6.2529 13 1 6.9170 -1.2429 -5.7175 14 7 6.4113 0.5574 -6.7057 15 6 7.2749 1.3308 -5.9766 16 1 7.7114 0.9430 -5.0681 17 6 7.5890 2.6131 -6.4054 18 7 8.4194 3.3562 -5.7050 19 14 6.8333 3.2839 -7.9765 20 1 5.5563 3.9715 -7.6573 21 1 7.7716 4.2488 -8.6043 22 1 6.5714 2.1649 -8.9169 23 6 5.6400 -1.6884 -7.4434 24 1 5.0842 -1.1056 -8.1779 25 6 6.8492 -2.3636 -8.0938 26 6 4.7260 -2.7350 -6.7719 27 6 2.7873 -2.6600 -2.2079 28 8 3.0946 -3.9734 -2.0875 29 7 2.3478 -1.9888 -1.1565 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.9008 1.0393 -2.4587 38 1 2.7288 -0.1329 -4.4826 39 1 4.0819 -0.0569 -5.7600 40 1 5.0442 -0.5754 -4.3423 41 1 6.0194 0.9056 -7.5218 42 1 8.6386 4.2524 -6.0045 43 1 6.5087 -3.0508 -8.8682 44 1 7.4931 -1.6050 -8.5388 45 1 7.4073 -2.9159 -7.3376 46 1 5.2907 -3.6451 -6.5697 47 1 3.8789 -2.9608 -7.4196 48 1 4.0131 -4.1411 -1.8361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939262035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:01 Heat of formation + Delta-G solvation = -49.542735 kcal Electronic energy + Delta-G solvation = -29274.974497 eV Core-core repulsion = 25329.517002 eV Total energy + Delta-G solvation = -3945.457495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14845 -40.80365 -39.11210 -38.44053 -36.16613 -35.93063 -34.35113 -33.45011 -32.78280 -30.85849 -29.52593 -28.03322 -27.67773 -25.97551 -25.30468 -24.42112 -23.05510 -21.79345 -21.63929 -20.97793 -19.52726 -19.43916 -18.39110 -18.10809 -17.56848 -17.15436 -16.69521 -16.27505 -16.14785 -15.55125 -15.28312 -15.10116 -14.93534 -14.72766 -14.56816 -14.53551 -14.33504 -14.08614 -13.88456 -13.49436 -13.42474 -13.14843 -12.98031 -12.92904 -12.91315 -12.86539 -12.42756 -12.21648 -12.14094 -12.06874 -11.93102 -11.84901 -11.80841 -11.47478 -11.28887 -11.07328 -10.91357 -10.53291 -10.00779 -9.73467 -9.31987 -7.99445 -5.35458 -0.49970 0.00345 1.43540 1.45637 1.52977 1.55446 1.79750 2.32774 2.51613 2.58489 3.14013 3.29843 3.37743 3.53308 3.65676 3.68836 3.81746 3.86815 4.04449 4.05997 4.10263 4.22589 4.30544 4.36619 4.38407 4.52453 4.56704 4.66293 4.75425 4.80172 4.82415 4.84952 4.86213 4.94850 5.01718 5.04656 5.07539 5.15361 5.18953 5.29600 5.33894 5.40705 5.42449 5.43879 5.79285 6.22976 6.31702 6.44301 6.73541 6.95966 7.08945 7.81351 8.01642 9.21371 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.003872 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.659205 B = 7229.104827 C = 9380.586804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C -0.147 4.147 4 C 0.176 3.824 5 C -0.180 4.180 6 C -0.024 4.024 7 C -0.219 4.219 8 C 0.578 3.422 9 O -0.560 6.560 10 N -0.606 5.606 11 C 0.082 3.918 12 C 0.175 3.825 13 H 0.062 0.938 14 N -0.732 5.732 15 C -0.232 4.232 16 H 0.058 0.942 17 C -0.054 4.054 18 N -0.981 5.981 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.303 1.303 22 H -0.247 1.247 23 C -0.105 4.105 24 H 0.094 0.906 25 C -0.133 4.133 26 C 0.118 3.882 27 C 0.352 3.648 28 O -0.479 6.479 29 N -0.524 5.524 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.176 0.824 38 H 0.159 0.841 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.370 0.630 42 H 0.257 0.743 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 -6.652 4.946 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.205 4.205 4 C 0.038 3.962 5 C -0.199 4.199 6 C -0.050 4.050 7 C -0.225 4.225 8 C 0.367 3.633 9 O -0.440 6.440 10 N -0.339 5.339 11 C -0.043 4.043 12 C 0.065 3.935 13 H 0.080 0.920 14 N -0.374 5.374 15 C -0.363 4.363 16 H 0.076 0.924 17 C -0.246 4.246 18 N -0.631 5.631 19 Si 0.776 3.224 20 H -0.202 1.202 21 H -0.230 1.230 22 H -0.171 1.171 23 C -0.124 4.124 24 H 0.112 0.888 25 C -0.190 4.190 26 C -0.004 4.004 27 C 0.173 3.827 28 O -0.289 6.289 29 N -0.244 5.244 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.193 0.807 38 H 0.177 0.823 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.205 0.795 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -15.037 -7.848 5.659 17.881 hybrid contribution 0.698 0.926 -1.299 1.741 sum -14.338 -6.922 4.360 16.508 Atomic orbital electron populations 1.21798 0.92127 1.01924 1.03720 1.20253 0.97201 0.96159 0.93122 1.21962 1.01148 0.93374 1.04007 1.21774 0.90456 0.87630 0.96363 1.22280 1.02239 1.03500 0.91917 1.22131 0.91039 0.91148 1.00658 1.20925 1.10153 0.96028 0.95421 1.17706 0.78205 0.85458 0.81949 1.90786 1.59573 1.17307 1.76340 1.48361 1.47279 1.17041 1.21175 1.23377 0.97168 0.82072 1.01724 1.21498 0.93721 0.84717 0.93600 0.91953 1.42505 1.54036 1.13085 1.27791 1.18959 1.17930 0.95080 1.04349 0.92415 1.25423 1.00089 0.97179 1.01938 1.69877 1.40410 1.10667 1.42123 0.85512 0.77753 0.78556 0.80557 1.20200 1.23013 1.17145 1.22495 0.96997 0.95837 0.97106 0.88780 1.21655 0.96262 1.00350 1.00761 1.22076 0.97820 0.96651 0.83876 1.19192 0.92136 0.84156 0.87253 1.84715 1.35611 1.17560 1.90967 1.67127 1.15155 1.10166 1.31914 0.89591 0.93707 0.91635 0.89375 0.89825 0.93005 0.90861 0.80695 0.82310 0.90063 0.91523 0.79528 0.93367 0.90475 0.92780 0.92657 0.91039 0.90495 0.72386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 2 C -0.05 -0.79 3.23 -11.54 -0.04 -0.83 16 3 C -0.15 -1.91 8.61 71.98 0.62 -1.29 16 4 C 0.18 3.97 5.79 42.58 0.25 4.22 16 5 C -0.18 -3.72 9.15 22.32 0.20 -3.51 16 6 C -0.02 -0.58 8.29 22.72 0.19 -0.39 16 7 C -0.22 -6.34 5.44 -19.91 -0.11 -6.45 16 8 C 0.58 18.41 7.37 86.69 0.64 19.05 16 9 O -0.56 -21.24 16.34 12.43 0.20 -21.04 16 10 N -0.61 -17.23 3.32 -815.12 -2.71 -19.94 16 11 C 0.08 2.38 4.92 86.93 0.43 2.81 16 12 C 0.18 5.67 3.18 46.46 0.15 5.82 16 13 H 0.06 2.23 8.00 -2.38 -0.02 2.21 16 14 N -0.73 -29.24 5.04 -316.02 -1.59 -30.84 16 15 C -0.23 -11.88 10.44 84.03 0.88 -11.00 16 16 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 17 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 18 N -0.98 -59.11 13.97 21.65 0.30 -58.81 16 19 Si 0.95 41.28 27.74 68.60 1.90 43.18 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.25 -9.45 6.52 99.48 0.65 -8.80 16 23 C -0.10 -2.64 3.18 -9.60 -0.03 -2.67 16 24 H 0.09 2.22 8.00 -2.39 -0.02 2.20 16 25 C -0.13 -3.07 9.14 71.98 0.66 -2.41 16 26 C 0.12 2.98 6.47 86.73 0.56 3.54 16 27 C 0.35 10.49 7.74 85.13 0.66 11.15 16 28 O -0.48 -13.97 12.24 -70.79 -0.87 -14.84 16 29 N -0.52 -14.63 10.28 -296.05 -3.04 -17.67 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.81 6.47 -2.38 -0.02 0.79 16 37 H 0.18 2.55 6.28 -2.91 -0.02 2.53 16 38 H 0.16 3.40 5.81 -2.91 -0.02 3.39 16 39 H 0.08 2.21 6.94 -2.39 -0.02 2.19 16 40 H 0.07 2.06 7.24 -2.38 -0.02 2.04 16 41 H 0.37 14.05 5.62 -92.71 -0.52 13.53 16 42 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.07 1.80 7.82 -2.39 -0.02 1.79 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.42 8.37 9.06 -74.06 -0.67 7.70 16 Total: -1.00 -71.58 386.32 0.11 -71.46 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.26 Total: 34.15 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.18 Total: 14.34 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -7.04 Total: -127.26 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.66 Total: -35.88 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.90 Total: 43.18 kcal Total: -71.58 0.11 -71.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939262035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.922 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds