Wall clock time and date at job start Tue Mar 31 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46775 * 2 1 4 4 O 1.42892 * 109.47189 * 119.99712 * 2 1 3 5 5 C 1.35693 * 116.99938 * 150.00167 * 4 2 1 6 6 C 1.38890 * 119.62338 * 180.02562 * 5 4 2 7 7 C 1.39576 * 118.94550 * 180.02562 * 6 5 4 8 8 C 1.48161 * 120.89092 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00092 * 6.93813 * 8 7 6 10 10 N 1.34774 * 120.00047 * 186.93877 * 8 7 6 11 11 C 1.47423 * 125.65131 * 174.53671 * 10 8 7 12 12 C 1.54902 * 104.83512 * 155.83826 * 11 10 8 13 13 H 1.09007 * 111.00369 * 278.89696 * 12 11 10 14 14 N 1.46499 * 111.00735 * 155.08214 * 12 11 10 15 15 C 1.36939 * 119.99908 * 89.58008 * 14 12 11 16 16 H 1.08001 * 120.00227 * 0.02562 * 15 14 12 17 17 C 1.38807 * 119.99816 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99790 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00531 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47430 * 270.00217 * 19 17 15 21 21 H 1.48504 * 109.46656 * 29.99852 * 19 17 15 22 22 H 1.48491 * 109.47354 * 149.99725 * 19 17 15 23 23 C 1.55155 * 101.61950 * 36.98709 * 12 11 10 24 24 H 1.09003 * 110.71912 * 82.88142 * 23 12 11 25 25 C 1.52997 * 110.72142 * 206.15713 * 23 12 11 26 26 C 1.47023 * 125.64718 * 354.49306 * 10 8 7 27 27 C 1.39961 * 118.21567 * 0.27509 * 7 6 5 28 28 C 1.37984 * 119.13444 * 359.47144 * 27 7 6 29 29 N 1.31904 * 120.97517 * 0.54371 * 28 27 7 30 30 H 1.09003 * 109.47564 * 299.99766 * 1 2 3 31 31 H 1.08999 * 109.47572 * 60.00215 * 1 2 3 32 32 H 1.09001 * 109.46851 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47070 * 240.00573 * 2 1 3 34 34 H 1.08999 * 109.47047 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46895 * 300.00199 * 3 2 1 36 36 H 1.09003 * 109.46884 * 59.99818 * 3 2 1 37 37 H 1.08002 * 120.52704 * 359.97438 * 6 5 4 38 38 H 1.08996 * 110.36599 * 36.99493 * 11 10 8 39 39 H 1.08999 * 110.45714 * 274.72286 * 11 10 8 40 40 H 0.96999 * 120.00125 * 269.58062 * 14 12 11 41 41 H 0.97003 * 119.99985 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.47183 * 60.00359 * 25 23 12 43 43 H 1.09009 * 109.46940 * 180.02562 * 25 23 12 44 44 H 1.09000 * 109.47267 * 299.99529 * 25 23 12 45 45 H 1.08998 * 109.88397 * 300.51625 * 26 10 8 46 46 H 1.09003 * 109.88010 * 61.52183 * 26 10 8 47 47 H 1.07998 * 120.43472 * 179.72533 * 27 7 6 48 48 H 1.08001 * 119.51203 * 180.27281 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1667 5 6 3.1988 -1.3129 1.0652 6 6 3.7130 -1.9857 2.1661 7 6 4.9410 -2.6381 2.0461 8 6 5.5292 -3.3693 3.1927 9 8 4.8876 -3.5144 4.2144 10 7 6.7759 -3.8733 3.1026 11 6 7.5229 -4.5190 4.1973 12 6 8.5510 -5.4360 3.4890 13 1 8.0899 -6.3742 3.1802 14 7 9.7131 -5.6825 4.3463 15 6 9.7149 -6.7468 5.2079 16 1 8.8597 -7.4048 5.2552 17 6 10.8157 -6.9800 6.0206 18 7 10.8172 -8.0028 6.8491 19 14 12.2945 -5.8416 5.9395 20 1 13.2515 -6.3449 4.9216 21 1 11.8476 -4.4755 5.5661 22 1 12.9600 -5.7993 7.2663 23 6 8.9406 -4.5761 2.2578 24 1 9.7054 -3.8462 2.5235 25 6 9.4148 -5.4640 1.1055 26 6 7.6158 -3.8712 1.8958 27 6 5.6045 -2.5786 0.8152 28 6 5.0208 -1.8925 -0.2301 29 7 3.8583 -1.2876 -0.0800 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.1716 -2.0031 3.1005 38 1 6.8504 -5.1112 4.8178 39 1 8.0354 -3.7707 4.8019 40 1 10.4813 -5.0917 4.3037 41 1 11.5864 -8.1655 7.4173 42 1 8.6142 -6.1462 0.8193 43 1 9.6832 -4.8402 0.2529 44 1 10.2851 -6.0381 1.4236 45 1 7.1146 -4.4141 1.0944 46 1 7.8119 -2.8458 1.5825 47 1 6.5588 -3.0668 0.6839 48 1 5.5253 -1.8464 -1.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939519025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:37 Heat of formation + Delta-G solvation = 1.128003 kcal Electronic energy + Delta-G solvation = -28470.405417 eV Core-core repulsion = 24527.145169 eV Total energy + Delta-G solvation = -3943.260247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20428 -40.01140 -38.39618 -37.70095 -34.55125 -33.62004 -32.96440 -32.40201 -31.16910 -30.46997 -28.23176 -27.62658 -26.73428 -25.14204 -23.66808 -23.52487 -22.04207 -21.23670 -20.36888 -19.98442 -18.58938 -17.67089 -17.39688 -16.50535 -16.16929 -15.92652 -15.73246 -15.45922 -14.77087 -14.67553 -14.45221 -14.29065 -14.10607 -13.67134 -13.50574 -13.34401 -13.31477 -12.90110 -12.70793 -12.69519 -12.67786 -12.40498 -12.29083 -11.94309 -11.81844 -11.43074 -11.30282 -11.21633 -11.13123 -10.84910 -10.73670 -10.44459 -10.26058 -10.13374 -10.02876 -9.69399 -9.67820 -9.09471 -8.80158 -8.55093 -7.43321 -5.86509 -3.25267 0.50416 0.88245 2.55560 2.80251 3.03494 3.30244 3.32086 3.39516 3.60597 3.94862 4.21116 4.48178 4.49777 4.50282 4.60901 4.65793 4.77950 4.79123 4.84400 4.90579 5.08212 5.17079 5.19860 5.32056 5.35245 5.38402 5.41887 5.46256 5.48777 5.51063 5.59717 5.66715 5.68232 5.74643 5.80907 5.82712 5.97238 6.03201 6.06757 6.19074 6.29957 6.37837 6.44102 6.68936 6.98090 7.50507 7.51749 7.87030 8.09548 8.31612 9.07679 9.79343 9.96584 11.30993 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.002268 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.574883 B =12341.487872 C =12838.416462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.300 6.300 5 C 0.320 3.680 6 C -0.136 4.136 7 C -0.043 4.043 8 C 0.567 3.433 9 O -0.528 6.528 10 N -0.603 5.603 11 C 0.080 3.920 12 C 0.182 3.818 13 H 0.077 0.923 14 N -0.733 5.733 15 C -0.254 4.254 16 H 0.093 0.907 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.277 1.277 22 H -0.290 1.290 23 C -0.120 4.120 24 H 0.085 0.915 25 C -0.137 4.137 26 C 0.096 3.904 27 C -0.217 4.217 28 C 0.136 3.864 29 N -0.530 5.530 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.173 0.827 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 16.457 -19.860 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.141 3.859 6 C -0.158 4.158 7 C -0.054 4.054 8 C 0.355 3.645 9 O -0.405 6.405 10 N -0.336 5.336 11 C -0.044 4.044 12 C 0.070 3.930 13 H 0.095 0.905 14 N -0.374 5.374 15 C -0.383 4.383 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.574 5.574 19 Si 0.714 3.286 20 H -0.209 1.209 21 H -0.203 1.203 22 H -0.216 1.216 23 C -0.139 4.139 24 H 0.103 0.897 25 C -0.195 4.195 26 C -0.027 4.027 27 C -0.237 4.237 28 C -0.020 4.020 29 N -0.254 5.254 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.190 0.810 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.588 16.639 -19.592 29.556 hybrid contribution 1.492 0.518 0.594 1.688 sum -13.096 17.157 -18.998 28.754 Atomic orbital electron populations 1.21914 0.92820 1.03108 1.03012 1.22356 0.94491 0.92727 0.87925 1.22221 1.02143 0.95631 1.02614 1.86323 1.31414 1.64342 1.38663 1.19595 0.86363 0.90512 0.89410 1.21130 0.96010 0.99103 0.99531 1.20133 0.94161 0.96687 0.94394 1.17756 0.80491 0.79401 0.86893 1.90801 1.59804 1.58737 1.31147 1.48331 1.13763 1.57653 1.13819 1.23460 0.94729 0.96555 0.89683 1.21355 0.88032 0.95321 0.88258 0.90497 1.42623 1.15285 1.32941 1.46539 1.19064 1.02909 1.02846 1.13495 0.88950 1.24690 0.97995 0.97691 0.98283 1.69702 1.30935 1.29795 1.26960 0.86567 0.83905 0.80810 0.77298 1.20937 1.20293 1.21634 1.22612 0.95446 0.98359 0.97529 0.89654 1.21705 1.02234 0.99109 0.96435 1.22639 0.91606 1.00481 0.87999 1.23525 1.04032 1.02927 0.93184 1.22413 0.89460 0.91286 0.98814 1.67100 1.10711 1.23094 1.24544 0.91563 0.90470 0.91747 0.89226 0.91994 0.91093 0.91939 0.82967 0.90153 0.91178 0.80224 0.92869 0.92432 0.92931 0.91213 0.90264 0.90642 0.81023 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.69 3.11 -26.73 -0.08 0.61 16 3 C -0.17 -1.25 9.53 37.16 0.35 -0.90 16 4 O -0.30 -3.41 9.76 -18.78 -0.18 -3.59 16 5 C 0.32 3.84 7.45 -17.16 -0.13 3.71 16 6 C -0.14 -1.76 9.61 -38.84 -0.37 -2.13 16 7 C -0.04 -0.55 5.90 -104.68 -0.62 -1.17 16 8 C 0.57 8.97 7.83 -12.19 -0.10 8.87 16 9 O -0.53 -10.30 16.69 5.35 0.09 -10.21 16 10 N -0.60 -8.84 3.33 -171.87 -0.57 -9.41 16 11 C 0.08 1.40 6.63 -2.53 -0.02 1.39 16 12 C 0.18 3.15 3.14 -65.79 -0.21 2.94 16 13 H 0.08 1.39 8.02 -51.93 -0.42 0.98 16 14 N -0.73 -15.83 5.06 -51.35 -0.26 -16.09 16 15 C -0.25 -6.76 10.46 -15.06 -0.16 -6.92 16 16 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 18 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 19 Si 0.88 21.08 27.73 -169.99 -4.71 16.37 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.12 -1.51 3.19 -88.76 -0.28 -1.79 16 24 H 0.09 1.07 8.00 -51.93 -0.42 0.66 16 25 C -0.14 -1.50 9.16 37.16 0.34 -1.16 16 26 C 0.10 1.03 4.48 -3.04 -0.01 1.02 16 27 C -0.22 -2.10 8.68 -39.03 -0.34 -2.44 16 28 C 0.14 1.19 11.17 -17.61 -0.20 1.00 16 29 N -0.53 -5.70 8.61 -13.38 -0.12 -5.81 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.79 6.98 -51.93 -0.36 0.43 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.15 2.03 7.76 -52.49 -0.41 1.62 16 38 H 0.08 1.58 7.99 -51.93 -0.41 1.16 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.36 7.68 5.60 -40.82 -0.23 7.45 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 43 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.71 6.39 -51.93 -0.33 0.37 16 46 H 0.08 0.66 6.74 -51.93 -0.35 0.31 16 47 H 0.17 1.32 2.93 -52.99 -0.16 1.17 16 48 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -32.88 387.46 -8.02 -40.90 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.32 Total: 6.92 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.56 Total: 2.59 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.17 Total: -58.81 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.09 Total: -13.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.88 -8.02 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939519025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.027 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds