Wall clock time and date at job start Tue Mar 31 2020 17:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 O 1.42903 * 109.46895 * 120.00243 * 2 1 3 5 5 C 1.35684 * 117.00046 * 150.00061 * 4 2 1 6 6 C 1.38889 * 119.62553 * 179.97438 * 5 4 2 7 7 C 1.39566 * 118.95047 * 180.02562 * 6 5 4 8 8 C 1.48158 * 120.89523 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00174 * 163.42040 * 8 7 6 10 10 N 1.34770 * 119.99981 * 343.41685 * 8 7 6 11 11 C 1.47030 * 125.65156 * 174.02254 * 10 8 7 12 12 C 1.54316 * 107.27126 * 178.97850 * 11 10 8 13 13 H 1.08997 * 110.72267 * 96.17565 * 12 11 10 14 14 C 1.53006 * 110.87183 * 219.37160 * 12 11 10 15 15 C 1.55155 * 102.94520 * 337.80940 * 12 11 10 16 16 H 1.09000 * 111.00473 * 277.42788 * 15 12 11 17 17 N 1.46503 * 111.03953 * 153.59481 * 15 12 11 18 18 C 1.36937 * 120.00404 * 161.33407 * 17 15 12 19 19 H 1.08007 * 119.99637 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00307 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47310 * 60.00065 * 22 20 18 24 24 H 1.48508 * 109.47053 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47454 * 299.99802 * 22 20 18 26 26 C 1.47430 * 125.65053 * 354.06997 * 10 8 7 27 27 C 1.39977 * 118.21531 * 0.26627 * 7 6 5 28 28 C 1.37979 * 119.12873 * 359.48847 * 27 7 6 29 29 N 1.31908 * 120.97856 * 0.52618 * 28 27 7 30 30 H 1.09002 * 109.47343 * 299.99887 * 1 2 3 31 31 H 1.09000 * 109.47095 * 60.00137 * 1 2 3 32 32 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47000 * 239.99707 * 2 1 3 34 34 H 1.08996 * 109.46792 * 60.00292 * 3 2 1 35 35 H 1.08998 * 109.46903 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47048 * 299.99892 * 3 2 1 37 37 H 1.08004 * 120.52564 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.87946 * 59.55976 * 11 10 8 39 39 H 1.08997 * 109.88206 * 298.40039 * 11 10 8 40 40 H 1.09000 * 109.46803 * 173.60855 * 14 12 11 41 41 H 1.08990 * 109.47009 * 293.61372 * 14 12 11 42 42 H 1.09001 * 109.46587 * 53.61325 * 14 12 11 43 43 H 0.97000 * 119.99404 * 341.32668 * 17 15 12 44 44 H 0.96994 * 119.99599 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.36965 * 85.24829 * 26 10 8 46 46 H 1.09001 * 110.36037 * 322.92602 * 26 10 8 47 47 H 1.07995 * 120.43408 * 179.72507 * 27 7 6 48 48 H 1.08006 * 119.50598 * 180.27173 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1987 -1.3131 1.0653 6 6 3.7133 -1.9851 2.1665 7 6 4.9413 -2.6375 2.0465 8 6 5.5299 -3.3679 3.1934 9 8 6.4242 -4.1696 3.0088 10 7 5.0736 -3.1430 4.4414 11 6 5.4767 -3.8813 5.6473 12 6 4.7180 -3.2609 6.8393 13 1 3.8150 -3.8300 7.0600 14 6 5.6178 -3.1770 8.0740 15 6 4.3604 -1.8421 6.3232 16 1 5.1995 -1.1578 6.4484 17 7 3.1621 -1.3265 6.9899 18 6 2.8948 0.0165 6.9757 19 1 3.5677 0.6957 6.4732 20 6 1.7592 0.5049 7.6069 21 7 0.9389 -0.3229 8.2188 22 14 1.3950 2.3369 7.5880 23 1 1.2516 2.7987 6.1840 24 1 0.1330 2.5984 8.3259 25 1 2.5104 3.0701 8.2388 26 6 4.0867 -2.1165 4.8234 27 6 5.6043 -2.5791 0.8151 28 6 5.0202 -1.8936 -0.2303 29 7 3.8577 -1.2886 -0.0802 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.1719 -2.0025 3.1008 38 1 6.5514 -3.7830 5.8001 39 1 5.2095 -4.9330 5.5446 40 1 5.0996 -2.6348 8.8649 41 1 5.8561 -4.1831 8.4189 42 1 6.5386 -2.6532 7.8175 43 1 2.5579 -1.9365 7.4414 44 1 0.1455 0.0185 8.6602 45 1 3.0736 -2.4942 4.6856 46 1 4.2371 -1.2093 4.2382 47 1 6.5585 -3.0674 0.6839 48 1 5.5244 -1.8483 -1.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939519027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:43 Heat of formation + Delta-G solvation = -12.772634 kcal Electronic energy + Delta-G solvation = -29327.194790 eV Core-core repulsion = 25383.331766 eV Total energy + Delta-G solvation = -3943.863024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00590 -39.79815 -38.25876 -37.48411 -34.22197 -33.41188 -33.22944 -32.02902 -30.78032 -30.15543 -27.73497 -27.35490 -26.70302 -24.82957 -23.86314 -23.32096 -22.02687 -21.18294 -20.14123 -19.75041 -18.14501 -17.25683 -16.94357 -16.53417 -16.10645 -15.92969 -15.68653 -15.25357 -14.74547 -14.38875 -14.30234 -14.04755 -13.74232 -13.64345 -13.29739 -13.13363 -13.05666 -12.81185 -12.77220 -12.42385 -12.38502 -12.15103 -12.02505 -11.84795 -11.64862 -11.15298 -11.04522 -11.01669 -10.87799 -10.74218 -10.65833 -10.33444 -10.18330 -10.04387 -9.88745 -9.79273 -9.59977 -9.03978 -8.58616 -8.45164 -7.13207 -5.88618 -3.19796 0.67398 1.09092 2.84279 2.90120 3.07393 3.38224 3.43540 3.43675 3.76673 4.13644 4.38711 4.52856 4.76722 4.84138 4.87937 4.92411 4.94915 5.03661 5.06975 5.14526 5.17395 5.44521 5.48255 5.51792 5.57802 5.61652 5.66344 5.68410 5.70757 5.74238 5.76132 5.83431 5.94654 6.02292 6.03735 6.09746 6.14521 6.15973 6.26192 6.29747 6.38056 6.42898 6.55860 6.79025 7.23586 7.58126 7.61107 7.71655 8.14255 8.28677 9.41049 9.92960 10.28212 11.33061 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.004957 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.074792 B = 5647.710557 C = 8863.328233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 C -0.170 4.170 4 O -0.294 6.294 5 C 0.323 3.677 6 C -0.172 4.172 7 C -0.047 4.047 8 C 0.570 3.430 9 O -0.541 6.541 10 N -0.602 5.602 11 C 0.117 3.883 12 C -0.114 4.114 13 H 0.086 0.914 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.067 0.933 17 N -0.709 5.709 18 C -0.250 4.250 19 H 0.071 0.929 20 C -0.004 4.004 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.062 3.938 27 C -0.161 4.161 28 C 0.131 3.869 29 N -0.530 5.530 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.170 0.830 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.388 0.612 44 H 0.258 0.742 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.146 0.854 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -3.347 -14.517 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.026 3.974 3 C -0.227 4.227 4 O -0.201 6.201 5 C 0.144 3.856 6 C -0.193 4.193 7 C -0.058 4.058 8 C 0.359 3.641 9 O -0.420 6.420 10 N -0.335 5.335 11 C -0.006 4.006 12 C -0.133 4.133 13 H 0.104 0.896 14 C -0.192 4.192 15 C 0.064 3.936 16 H 0.085 0.915 17 N -0.348 5.348 18 C -0.381 4.381 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.736 3.264 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.064 4.064 27 C -0.182 4.182 28 C -0.024 4.024 29 N -0.255 5.255 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.187 0.813 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.164 0.836 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.053 -3.101 -15.109 16.231 hybrid contribution -0.188 0.510 0.523 0.754 sum 4.865 -2.591 -14.586 15.593 Atomic orbital electron populations 1.21919 0.92837 1.03066 1.03128 1.22346 0.94547 0.92754 0.87742 1.22225 1.02054 0.95685 1.02737 1.86391 1.31154 1.64076 1.38492 1.19682 0.86333 0.90283 0.89268 1.22220 0.97035 0.99352 1.00644 1.20083 0.94230 0.96779 0.94704 1.17772 0.82273 0.82455 0.81628 1.90748 1.29928 1.36661 1.84636 1.48404 1.43012 1.35890 1.06152 1.22044 0.99538 0.95584 0.83406 1.22496 0.98991 0.98009 0.93850 0.89565 1.21667 0.99018 1.01160 0.97350 1.21396 0.91614 0.92178 0.88376 0.91526 1.42280 1.23917 1.05887 1.62753 1.19164 1.05661 0.83663 1.29590 0.91068 1.24734 0.97399 0.97771 1.00206 1.69644 1.14686 1.33473 1.39726 0.86296 0.77373 0.85061 0.77622 1.21075 1.21607 1.21147 1.23962 0.91402 0.89958 1.01066 1.22045 1.02243 1.01606 0.92335 1.22336 0.89681 0.91700 0.98679 1.67110 1.10585 1.23013 1.24763 0.91236 0.90619 0.91820 0.89443 0.91609 0.92065 0.91235 0.81331 0.91211 0.91614 0.91233 0.93099 0.92833 0.77765 0.93253 0.90429 0.90363 0.83574 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.56 37.16 0.36 -1.16 16 2 C 0.08 0.98 3.11 -26.73 -0.08 0.89 16 3 C -0.17 -1.86 9.53 37.16 0.35 -1.51 16 4 O -0.29 -4.41 9.76 -18.76 -0.18 -4.59 16 5 C 0.32 4.80 7.45 -17.16 -0.13 4.67 16 6 C -0.17 -2.59 8.18 -38.85 -0.32 -2.91 16 7 C -0.05 -0.70 5.81 -104.68 -0.61 -1.31 16 8 C 0.57 9.37 7.75 -12.19 -0.09 9.28 16 9 O -0.54 -9.98 16.90 5.35 0.09 -9.89 16 10 N -0.60 -9.52 3.33 -171.52 -0.57 -10.10 16 11 C 0.12 1.69 6.47 -3.06 -0.02 1.67 16 12 C -0.11 -1.70 3.16 -88.79 -0.28 -1.99 16 13 H 0.09 1.32 8.00 -51.93 -0.42 0.90 16 14 C -0.13 -1.83 9.17 37.16 0.34 -1.48 16 15 C 0.18 3.20 3.13 -65.78 -0.21 2.99 16 16 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 17 N -0.71 -16.07 5.28 -51.35 -0.27 -16.34 16 18 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 19 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 20 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 21 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 22 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 C 0.06 1.03 4.63 -2.53 -0.01 1.02 16 27 C -0.16 -2.02 9.67 -39.03 -0.38 -2.40 16 28 C 0.13 1.47 11.17 -17.61 -0.20 1.28 16 29 N -0.53 -7.04 8.61 -13.38 -0.12 -7.16 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.01 6.98 -51.93 -0.36 0.65 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.17 2.66 4.04 -52.48 -0.21 2.45 16 38 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 43 H 0.39 9.38 7.71 -40.82 -0.31 9.07 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.08 1.35 7.06 -51.93 -0.37 0.98 16 46 H 0.08 1.34 6.44 -51.93 -0.33 1.00 16 47 H 0.15 1.65 7.83 -52.49 -0.41 1.24 16 48 H 0.16 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -30.13 391.52 -8.40 -38.53 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.43 Total: 10.71 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.52 Total: 2.25 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.23 Total: -59.34 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.09 Total: -14.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.13 -8.40 -38.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939519027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.755 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds