Wall clock time and date at job start Tue Mar 31 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 O 1.42903 * 109.46895 * 120.00243 * 2 1 3 5 5 C 1.35684 * 117.00046 * 150.00061 * 4 2 1 6 6 C 1.38889 * 119.62553 * 179.97438 * 5 4 2 7 7 C 1.39566 * 118.95047 * 180.02562 * 6 5 4 8 8 C 1.48158 * 120.89523 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00174 * 163.42040 * 8 7 6 10 10 N 1.34770 * 119.99981 * 343.41685 * 8 7 6 11 11 C 1.47030 * 125.65156 * 174.02254 * 10 8 7 12 12 C 1.54316 * 107.27126 * 178.97850 * 11 10 8 13 13 H 1.08997 * 110.72267 * 96.17565 * 12 11 10 14 14 C 1.53006 * 110.87183 * 219.37160 * 12 11 10 15 15 C 1.55155 * 102.94520 * 337.80940 * 12 11 10 16 16 H 1.09000 * 111.00473 * 277.42788 * 15 12 11 17 17 N 1.46503 * 111.03953 * 153.59481 * 15 12 11 18 18 C 1.36937 * 120.00404 * 161.33407 * 17 15 12 19 19 H 1.08007 * 119.99637 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00307 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47310 * 60.00065 * 22 20 18 24 24 H 1.48508 * 109.47053 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47454 * 299.99802 * 22 20 18 26 26 C 1.47430 * 125.65053 * 354.06997 * 10 8 7 27 27 C 1.39977 * 118.21531 * 0.26627 * 7 6 5 28 28 C 1.37979 * 119.12873 * 359.48847 * 27 7 6 29 29 N 1.31908 * 120.97856 * 0.52618 * 28 27 7 30 30 H 1.09002 * 109.47343 * 299.99887 * 1 2 3 31 31 H 1.09000 * 109.47095 * 60.00137 * 1 2 3 32 32 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47000 * 239.99707 * 2 1 3 34 34 H 1.08996 * 109.46792 * 60.00292 * 3 2 1 35 35 H 1.08998 * 109.46903 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47048 * 299.99892 * 3 2 1 37 37 H 1.08004 * 120.52564 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.87946 * 59.55976 * 11 10 8 39 39 H 1.08997 * 109.88206 * 298.40039 * 11 10 8 40 40 H 1.09000 * 109.46803 * 173.60855 * 14 12 11 41 41 H 1.08990 * 109.47009 * 293.61372 * 14 12 11 42 42 H 1.09001 * 109.46587 * 53.61325 * 14 12 11 43 43 H 0.97000 * 119.99404 * 341.32668 * 17 15 12 44 44 H 0.96994 * 119.99599 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.36965 * 85.24829 * 26 10 8 46 46 H 1.09001 * 110.36037 * 322.92602 * 26 10 8 47 47 H 1.07995 * 120.43408 * 179.72507 * 27 7 6 48 48 H 1.08006 * 119.50598 * 180.27173 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1987 -1.3131 1.0653 6 6 3.7133 -1.9851 2.1665 7 6 4.9413 -2.6375 2.0465 8 6 5.5299 -3.3679 3.1934 9 8 6.4242 -4.1696 3.0088 10 7 5.0736 -3.1430 4.4414 11 6 5.4767 -3.8813 5.6473 12 6 4.7180 -3.2609 6.8393 13 1 3.8150 -3.8300 7.0600 14 6 5.6178 -3.1770 8.0740 15 6 4.3604 -1.8421 6.3232 16 1 5.1995 -1.1578 6.4484 17 7 3.1621 -1.3265 6.9899 18 6 2.8948 0.0165 6.9757 19 1 3.5677 0.6957 6.4732 20 6 1.7592 0.5049 7.6069 21 7 0.9389 -0.3229 8.2188 22 14 1.3950 2.3369 7.5880 23 1 1.2516 2.7987 6.1840 24 1 0.1330 2.5984 8.3259 25 1 2.5104 3.0701 8.2388 26 6 4.0867 -2.1165 4.8234 27 6 5.6043 -2.5791 0.8151 28 6 5.0202 -1.8936 -0.2303 29 7 3.8577 -1.2886 -0.0802 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.1719 -2.0025 3.1008 38 1 6.5514 -3.7830 5.8001 39 1 5.2095 -4.9330 5.5446 40 1 5.0996 -2.6348 8.8649 41 1 5.8561 -4.1831 8.4189 42 1 6.5386 -2.6532 7.8175 43 1 2.5579 -1.9365 7.4414 44 1 0.1455 0.0185 8.6602 45 1 3.0736 -2.4942 4.6856 46 1 4.2371 -1.2093 4.2382 47 1 6.5585 -3.0674 0.6839 48 1 5.5244 -1.8483 -1.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939519027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:42 Heat of formation + Delta-G solvation = -32.029558 kcal Electronic energy + Delta-G solvation = -29328.029833 eV Core-core repulsion = 25383.331766 eV Total energy + Delta-G solvation = -3944.698067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12891 -41.02260 -39.40345 -38.76982 -35.94266 -34.61563 -34.24730 -33.34336 -32.44991 -31.20502 -29.30541 -28.18952 -27.88879 -26.23478 -25.41768 -24.38780 -23.28504 -22.39203 -21.43744 -20.96996 -19.27516 -19.12369 -18.15037 -17.69717 -17.43538 -17.03709 -16.77260 -16.57411 -16.26156 -15.71145 -15.43778 -15.27883 -15.10790 -14.89060 -14.58584 -14.43563 -14.37643 -14.12801 -14.01882 -13.38259 -13.29229 -13.21499 -13.14572 -12.93692 -12.89930 -12.84544 -12.82714 -12.24755 -12.15735 -12.00331 -11.94761 -11.80580 -11.73163 -11.48947 -11.37267 -11.06693 -10.96061 -10.63617 -9.84703 -9.57319 -9.04556 -7.94646 -5.24123 -0.44574 0.06216 1.49080 1.50312 1.55999 1.63163 1.71971 1.98042 2.55957 2.69631 3.09808 3.24914 3.36024 3.64591 3.71763 3.83047 3.85838 3.90843 3.98786 4.01541 4.04363 4.15523 4.25028 4.27780 4.42885 4.50753 4.58302 4.60632 4.67325 4.67713 4.80546 4.81493 4.83158 4.85064 4.85838 4.93260 5.07469 5.08530 5.15659 5.19161 5.23977 5.32349 5.35039 5.45196 5.54222 6.22588 6.25608 6.27851 6.69329 6.84733 7.34748 8.04483 8.29587 9.27692 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.004957 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.074792 B = 5647.710557 C = 8863.328233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.165 4.165 4 O -0.317 6.317 5 C 0.312 3.688 6 C -0.187 4.187 7 C -0.060 4.060 8 C 0.571 3.429 9 O -0.561 6.561 10 N -0.602 5.602 11 C 0.118 3.882 12 C -0.103 4.103 13 H 0.083 0.917 14 C -0.129 4.129 15 C 0.170 3.830 16 H 0.063 0.937 17 N -0.717 5.717 18 C -0.243 4.243 19 H 0.075 0.925 20 C -0.062 4.062 21 N -0.963 5.963 22 Si 0.962 3.038 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.278 1.278 26 C 0.080 3.920 27 C -0.157 4.157 28 C 0.144 3.856 29 N -0.530 5.530 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.378 0.622 44 H 0.251 0.749 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.163 0.837 48 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -3.271 -16.545 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 C -0.222 4.222 4 O -0.225 6.225 5 C 0.133 3.867 6 C -0.208 4.208 7 C -0.071 4.071 8 C 0.360 3.640 9 O -0.442 6.442 10 N -0.334 5.334 11 C -0.004 4.004 12 C -0.122 4.122 13 H 0.101 0.899 14 C -0.186 4.186 15 C 0.060 3.940 16 H 0.081 0.919 17 N -0.356 5.356 18 C -0.374 4.374 19 H 0.092 0.908 20 C -0.255 4.255 21 N -0.613 5.613 22 Si 0.792 3.208 23 H -0.207 1.207 24 H -0.223 1.223 25 H -0.205 1.205 26 C -0.046 4.046 27 C -0.177 4.177 28 C -0.011 4.011 29 N -0.255 5.255 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.171 0.829 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.211 0.789 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.180 0.820 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.424 -3.025 -17.155 18.567 hybrid contribution -0.512 0.439 1.045 1.244 sum 5.912 -2.586 -16.111 17.355 Atomic orbital electron populations 1.21947 0.91574 1.03182 1.03921 1.22617 0.95568 0.92920 0.86945 1.22200 1.01258 0.95315 1.03431 1.86367 1.31443 1.64449 1.40273 1.19743 0.86633 0.90606 0.89677 1.22054 0.97530 1.00732 1.00499 1.20082 0.94477 0.97358 0.95179 1.18007 0.81886 0.82166 0.81933 1.90731 1.30890 1.37621 1.84921 1.48404 1.42627 1.35646 1.06689 1.22123 0.99958 0.95936 0.82370 1.22409 0.99366 0.95616 0.94825 0.89866 1.21625 0.98585 1.02581 0.95851 1.21541 0.89700 0.93854 0.88950 0.91949 1.42342 1.25117 1.04869 1.63285 1.19487 1.05040 0.85076 1.27829 0.90753 1.25408 0.97843 1.01243 1.01033 1.69781 1.15182 1.34856 1.41432 0.85388 0.76873 0.81075 0.77492 1.20700 1.22251 1.20460 1.23565 0.91220 0.90077 0.99702 1.22315 1.02601 1.01250 0.91560 1.23072 0.88627 0.89536 0.99886 1.67220 1.11221 1.23137 1.23892 0.92401 0.87798 0.92064 0.88981 0.92857 0.93194 0.88548 0.82871 0.90175 0.90441 0.93224 0.90537 0.92054 0.78856 0.93966 0.91381 0.90908 0.81991 0.77450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.56 71.98 0.69 -2.14 16 2 C 0.07 1.72 3.11 30.60 0.10 1.81 16 3 C -0.16 -3.44 9.53 71.98 0.69 -2.75 16 4 O -0.32 -9.63 9.76 -90.03 -0.88 -10.51 16 5 C 0.31 9.17 7.45 84.80 0.63 9.80 16 6 C -0.19 -5.72 8.18 22.75 0.19 -5.53 16 7 C -0.06 -1.75 5.81 -19.90 -0.12 -1.86 16 8 C 0.57 18.33 7.75 86.88 0.67 19.00 16 9 O -0.56 -19.98 16.90 -3.76 -0.06 -20.04 16 10 N -0.60 -18.74 3.33 -814.85 -2.71 -21.46 16 11 C 0.12 3.26 6.47 86.72 0.56 3.82 16 12 C -0.10 -3.00 3.16 -9.61 -0.03 -3.03 16 13 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 14 C -0.13 -3.33 9.17 71.98 0.66 -2.67 16 15 C 0.17 6.19 3.13 46.38 0.15 6.33 16 16 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 17 N -0.72 -33.16 5.28 -316.38 -1.67 -34.83 16 18 C -0.24 -12.64 9.98 84.03 0.84 -11.80 16 19 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 20 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 21 N -0.96 -56.22 13.06 21.65 0.28 -55.94 16 22 Si 0.96 44.62 29.55 68.60 2.03 46.65 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.08 2.71 4.63 86.85 0.40 3.11 16 27 C -0.16 -3.57 9.67 22.63 0.22 -3.35 16 28 C 0.14 2.82 11.17 84.62 0.94 3.76 16 29 N -0.53 -13.15 8.61 -309.14 -2.66 -15.81 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 2.00 6.98 -2.39 -0.02 1.98 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.15 5.06 4.04 -2.91 -0.01 5.05 16 38 H 0.08 2.08 7.78 -2.39 -0.02 2.06 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.48 8.07 -2.39 -0.02 1.47 16 43 H 0.38 18.83 7.71 -92.71 -0.72 18.12 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.07 2.46 7.06 -2.39 -0.02 2.45 16 46 H 0.07 2.55 6.44 -2.39 -0.02 2.54 16 47 H 0.16 3.19 7.83 -2.91 -0.02 3.16 16 48 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -65.42 391.52 1.63 -63.78 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.25 Total: 36.61 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 7.05 Total: 11.55 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.76 Total: -128.04 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.94 Total: -30.55 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.42 1.63 -63.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939519027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.754 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds