Wall clock time and date at job start Tue Mar 31 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 O 1.42901 * 109.47369 * 120.00017 * 2 1 3 5 5 C 1.35422 * 117.00116 * 89.99721 * 4 2 1 6 6 N 1.32233 * 119.80037 * 0.02632 * 5 4 2 7 7 C 1.31884 * 121.80143 * 179.97438 * 6 5 4 8 8 C 1.38360 * 121.18300 * 359.97438 * 7 6 5 9 9 C 1.38332 * 119.45937 * 359.74043 * 8 7 6 10 10 C 1.39990 * 118.35105 * 0.50197 * 9 8 7 11 11 C 1.47523 * 120.59790 * 179.77795 * 10 9 8 12 12 O 1.21588 * 119.99474 * 144.16307 * 11 10 9 13 13 N 1.34774 * 120.00061 * 324.16055 * 11 10 9 14 14 C 1.47016 * 125.64787 * 174.71017 * 13 11 10 15 15 C 1.54322 * 107.27224 * 178.97764 * 14 13 11 16 16 H 1.09004 * 110.72051 * 96.34893 * 15 14 13 17 17 C 1.52999 * 110.71887 * 219.44432 * 15 14 13 18 18 C 1.55163 * 103.10044 * 337.89639 * 15 14 13 19 19 H 1.08995 * 111.00319 * 277.33800 * 18 15 14 20 20 N 1.46495 * 111.00132 * 153.48714 * 18 15 14 21 21 C 1.36943 * 119.99908 * 154.99821 * 20 18 15 22 22 H 1.08004 * 119.99933 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00077 * 180.02562 * 21 20 18 24 24 N 1.31623 * 120.00274 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99917 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47538 * 59.99536 * 25 23 21 27 27 H 1.48504 * 109.47297 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47133 * 299.99462 * 25 23 21 29 29 C 1.47418 * 125.64717 * 354.75563 * 13 11 10 30 30 H 1.08996 * 109.46875 * 60.00327 * 1 2 3 31 31 H 1.08995 * 109.46747 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46587 * 299.99978 * 1 2 3 33 33 H 1.08998 * 109.47318 * 240.00037 * 2 1 3 34 34 H 1.08997 * 109.47376 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46836 * 300.00077 * 3 2 1 36 36 H 1.08998 * 109.46888 * 59.99774 * 3 2 1 37 37 H 1.07998 * 119.40699 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.26269 * 180.02562 * 8 7 6 39 39 H 1.07994 * 120.82526 * 180.25266 * 9 8 7 40 40 H 1.09003 * 109.88586 * 59.56027 * 14 13 11 41 41 H 1.09004 * 110.01432 * 298.46735 * 14 13 11 42 42 H 1.09000 * 109.47684 * 56.15955 * 17 15 14 43 43 H 1.08991 * 109.47327 * 296.15347 * 17 15 14 44 44 H 1.09012 * 109.46721 * 176.15743 * 17 15 14 45 45 H 0.96999 * 120.00682 * 335.00195 * 20 18 15 46 46 H 0.96994 * 119.99900 * 179.97438 * 24 23 21 47 47 H 1.09007 * 110.36924 * 322.92862 * 29 13 11 48 48 H 1.08997 * 110.37455 * 85.14269 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2113 -2.0084 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1566 -3.9231 -0.2218 8 6 2.6157 -4.7005 0.8267 9 6 2.8897 -4.1060 2.0453 10 6 2.6794 -2.7281 2.1750 11 6 2.9507 -2.0441 3.4536 12 8 3.4010 -0.9147 3.4553 13 7 2.6992 -2.6711 4.6199 14 6 3.0224 -2.1542 5.9577 15 6 2.5290 -3.1966 6.9831 16 1 3.3430 -3.8555 7.2853 17 6 1.9125 -2.5071 8.2019 18 6 1.4499 -3.9835 6.1933 19 1 0.4944 -3.4594 6.2091 20 7 1.3079 -5.3457 6.7132 21 6 0.1301 -6.0237 6.5445 22 1 -0.6940 -5.5542 6.0278 23 6 -0.0047 -7.3142 7.0376 24 7 0.9997 -7.8866 7.6668 25 14 -1.6111 -8.2392 6.8068 26 1 -1.8989 -8.3773 5.3566 27 1 -1.4984 -9.5874 7.4192 28 1 -2.7129 -7.4885 7.4609 29 6 2.0555 -3.9894 4.7652 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.9478 -4.3872 -1.1743 38 1 2.7634 -5.7620 0.6932 39 1 3.2528 -4.6911 2.8773 40 1 2.5136 -1.2041 6.1208 41 1 4.0996 -2.0192 6.0553 42 1 1.1102 -1.8444 7.8775 43 1 2.6778 -1.9262 8.7165 44 1 1.5102 -3.2597 8.8803 45 1 2.0481 -5.7676 7.1770 46 1 0.9054 -8.7883 8.0116 47 1 1.2698 -4.1122 4.0196 48 1 2.7945 -4.7850 4.6711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939886324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:10 Heat of formation + Delta-G solvation = -22.032631 kcal Electronic energy + Delta-G solvation = -29387.099394 eV Core-core repulsion = 25442.834826 eV Total energy + Delta-G solvation = -3944.264568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.00892 -39.51023 -38.26725 -37.39688 -34.13548 -33.38103 -33.16824 -32.00762 -30.75463 -30.31364 -27.59644 -27.41501 -26.45742 -24.65802 -23.88133 -23.51592 -21.69125 -21.14385 -20.08912 -19.58852 -18.43205 -17.26579 -17.12768 -16.78992 -16.10365 -15.72834 -15.46721 -15.20015 -14.68574 -14.39560 -14.13550 -13.83805 -13.64936 -13.62108 -13.26691 -13.08165 -12.93149 -12.85178 -12.62577 -12.46807 -12.44328 -12.32909 -12.07238 -11.89060 -11.62242 -11.14151 -11.07233 -11.03081 -10.90623 -10.74665 -10.63766 -10.30846 -10.08428 -10.04610 -9.91191 -9.79869 -9.50869 -9.04068 -8.60933 -8.30317 -7.13378 -5.89690 -3.20580 0.70951 1.18609 2.84806 2.97159 3.18391 3.36684 3.42351 3.42450 3.74371 4.10265 4.46748 4.63337 4.69401 4.76905 4.83302 4.85839 4.98137 5.06335 5.09051 5.12361 5.21842 5.37495 5.38331 5.52328 5.58492 5.61985 5.62527 5.65837 5.71157 5.80313 5.82234 5.90798 5.97385 6.00289 6.02148 6.03157 6.20130 6.20913 6.28748 6.35927 6.43214 6.53468 6.62418 6.83210 7.20334 7.59031 7.64244 7.79047 8.27529 8.38660 9.39924 9.92881 10.28239 11.31996 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003400 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.059821 B = 8233.503198 C = 9352.058624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.276 6.276 5 C 0.369 3.631 6 N -0.547 5.547 7 C 0.159 3.841 8 C -0.218 4.218 9 C -0.006 4.006 10 C -0.200 4.200 11 C 0.580 3.420 12 O -0.532 6.532 13 N -0.610 5.610 14 C 0.119 3.881 15 C -0.115 4.115 16 H 0.084 0.916 17 C -0.134 4.134 18 C 0.178 3.822 19 H 0.069 0.931 20 N -0.708 5.708 21 C -0.249 4.249 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.069 3.931 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.387 0.613 46 H 0.258 0.742 47 H 0.069 0.931 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 11.550 -13.825 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.181 6.181 5 C 0.189 3.811 6 N -0.271 5.271 7 C 0.003 3.997 8 C -0.238 4.238 9 C -0.031 4.031 10 C -0.206 4.206 11 C 0.368 3.632 12 O -0.409 6.409 13 N -0.343 5.343 14 C -0.004 4.004 15 C -0.135 4.135 16 H 0.102 0.898 17 C -0.191 4.191 18 C 0.065 3.935 19 H 0.087 0.913 20 N -0.348 5.348 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.057 4.057 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.180 0.820 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.236 12.812 -14.360 19.515 hybrid contribution -0.427 -1.480 0.426 1.598 sum 2.810 11.333 -13.934 18.179 Atomic orbital electron populations 1.22222 0.94871 1.02890 1.02599 1.22402 0.94397 0.93066 0.87973 1.21878 1.02135 0.93784 1.02802 1.86475 1.78603 1.15110 1.37933 1.19699 0.88340 0.84833 0.88199 1.67362 1.23052 1.12797 1.23886 1.22606 0.90680 0.87629 0.98825 1.21959 1.05741 1.02141 0.93975 1.21934 0.91059 0.91963 0.98167 1.19891 1.11769 0.94324 0.94631 1.17435 0.78500 0.85068 0.82198 1.90776 1.45559 1.17624 1.86968 1.48353 1.59656 1.21128 1.05181 1.21972 0.99950 0.97458 0.81039 1.22535 0.99475 0.96596 0.94892 0.89760 1.21655 0.99975 1.00305 0.97187 1.21392 0.95514 0.87624 0.88937 0.91335 1.42279 1.15474 1.10595 1.66410 1.19199 0.91536 0.96019 1.31269 0.91070 1.24747 0.97720 0.97306 1.00522 1.69644 1.30654 1.14951 1.42373 0.86279 0.83129 0.79104 0.77719 1.21145 1.21630 1.21135 1.23678 0.96604 0.82793 1.02577 0.91126 0.92015 0.91891 0.89356 0.91740 0.90672 0.91510 0.82026 0.83800 0.83100 0.91536 0.91931 0.92893 0.93210 0.91356 0.77830 0.93259 0.91275 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.53 37.16 0.35 -1.40 16 2 C 0.08 0.92 3.11 -26.73 -0.08 0.84 16 3 C -0.15 -1.45 9.56 37.16 0.36 -1.10 16 4 O -0.28 -4.32 8.43 -35.35 -0.30 -4.62 16 5 C 0.37 5.67 7.44 -16.61 -0.12 5.55 16 6 N -0.55 -7.23 8.64 -12.98 -0.11 -7.34 16 7 C 0.16 1.70 11.17 -17.48 -0.20 1.50 16 8 C -0.22 -2.35 10.09 -39.50 -0.40 -2.75 16 9 C -0.01 -0.07 8.30 -38.89 -0.32 -0.40 16 10 C -0.20 -3.14 5.44 -104.69 -0.57 -3.71 16 11 C 0.58 10.25 7.38 -12.48 -0.09 10.16 16 12 O -0.53 -10.79 16.32 -12.10 -0.20 -10.99 16 13 N -0.61 -10.03 3.33 -171.62 -0.57 -10.61 16 14 C 0.12 1.81 6.47 -3.07 -0.02 1.79 16 15 C -0.12 -1.78 3.19 -88.78 -0.28 -2.07 16 16 H 0.08 1.32 8.00 -51.93 -0.42 0.91 16 17 C -0.13 -1.90 9.14 37.16 0.34 -1.56 16 18 C 0.18 3.27 3.17 -65.67 -0.21 3.06 16 19 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 20 N -0.71 -16.08 5.25 -51.24 -0.27 -16.35 16 21 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 22 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 25 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.07 1.16 4.92 -2.42 -0.01 1.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.02 6.98 -51.93 -0.36 0.66 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.91 5.78 -52.49 -0.30 1.60 16 40 H 0.07 1.01 7.80 -51.93 -0.41 0.61 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.39 9.37 7.76 -40.82 -0.32 9.05 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.07 1.18 7.25 -51.93 -0.38 0.81 16 48 H 0.07 1.15 6.92 -51.93 -0.36 0.79 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -31.21 392.41 -8.91 -40.12 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.57 Total: 9.01 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.50 Total: 4.24 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.23 Total: -59.92 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.50 Total: -15.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.21 -8.91 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939886324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.092 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds