Wall clock time and date at job start Tue Mar 31 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 O 1.42901 * 109.47369 * 120.00017 * 2 1 3 5 5 C 1.35422 * 117.00116 * 89.99721 * 4 2 1 6 6 N 1.32233 * 119.80037 * 0.02632 * 5 4 2 7 7 C 1.31884 * 121.80143 * 179.97438 * 6 5 4 8 8 C 1.38360 * 121.18300 * 359.97438 * 7 6 5 9 9 C 1.38332 * 119.45937 * 359.74043 * 8 7 6 10 10 C 1.39990 * 118.35105 * 0.50197 * 9 8 7 11 11 C 1.47523 * 120.59790 * 179.77795 * 10 9 8 12 12 O 1.21588 * 119.99474 * 144.16307 * 11 10 9 13 13 N 1.34774 * 120.00061 * 324.16055 * 11 10 9 14 14 C 1.47016 * 125.64787 * 174.71017 * 13 11 10 15 15 C 1.54322 * 107.27224 * 178.97764 * 14 13 11 16 16 H 1.09004 * 110.72051 * 96.34893 * 15 14 13 17 17 C 1.52999 * 110.71887 * 219.44432 * 15 14 13 18 18 C 1.55163 * 103.10044 * 337.89639 * 15 14 13 19 19 H 1.08995 * 111.00319 * 277.33800 * 18 15 14 20 20 N 1.46495 * 111.00132 * 153.48714 * 18 15 14 21 21 C 1.36943 * 119.99908 * 154.99821 * 20 18 15 22 22 H 1.08004 * 119.99933 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00077 * 180.02562 * 21 20 18 24 24 N 1.31623 * 120.00274 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99917 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47538 * 59.99536 * 25 23 21 27 27 H 1.48504 * 109.47297 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47133 * 299.99462 * 25 23 21 29 29 C 1.47418 * 125.64717 * 354.75563 * 13 11 10 30 30 H 1.08996 * 109.46875 * 60.00327 * 1 2 3 31 31 H 1.08995 * 109.46747 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46587 * 299.99978 * 1 2 3 33 33 H 1.08998 * 109.47318 * 240.00037 * 2 1 3 34 34 H 1.08997 * 109.47376 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46836 * 300.00077 * 3 2 1 36 36 H 1.08998 * 109.46888 * 59.99774 * 3 2 1 37 37 H 1.07998 * 119.40699 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.26269 * 180.02562 * 8 7 6 39 39 H 1.07994 * 120.82526 * 180.25266 * 9 8 7 40 40 H 1.09003 * 109.88586 * 59.56027 * 14 13 11 41 41 H 1.09004 * 110.01432 * 298.46735 * 14 13 11 42 42 H 1.09000 * 109.47684 * 56.15955 * 17 15 14 43 43 H 1.08991 * 109.47327 * 296.15347 * 17 15 14 44 44 H 1.09012 * 109.46721 * 176.15743 * 17 15 14 45 45 H 0.96999 * 120.00682 * 335.00195 * 20 18 15 46 46 H 0.96994 * 119.99900 * 179.97438 * 24 23 21 47 47 H 1.09007 * 110.36924 * 322.92862 * 29 13 11 48 48 H 1.08997 * 110.37455 * 85.14269 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2113 -2.0084 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1566 -3.9231 -0.2218 8 6 2.6157 -4.7005 0.8267 9 6 2.8897 -4.1060 2.0453 10 6 2.6794 -2.7281 2.1750 11 6 2.9507 -2.0441 3.4536 12 8 3.4010 -0.9147 3.4553 13 7 2.6992 -2.6711 4.6199 14 6 3.0224 -2.1542 5.9577 15 6 2.5290 -3.1966 6.9831 16 1 3.3430 -3.8555 7.2853 17 6 1.9125 -2.5071 8.2019 18 6 1.4499 -3.9835 6.1933 19 1 0.4944 -3.4594 6.2091 20 7 1.3079 -5.3457 6.7132 21 6 0.1301 -6.0237 6.5445 22 1 -0.6940 -5.5542 6.0278 23 6 -0.0047 -7.3142 7.0376 24 7 0.9997 -7.8866 7.6668 25 14 -1.6111 -8.2392 6.8068 26 1 -1.8989 -8.3773 5.3566 27 1 -1.4984 -9.5874 7.4192 28 1 -2.7129 -7.4885 7.4609 29 6 2.0555 -3.9894 4.7652 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.9478 -4.3872 -1.1743 38 1 2.7634 -5.7620 0.6932 39 1 3.2528 -4.6911 2.8773 40 1 2.5136 -1.2041 6.1208 41 1 4.0996 -2.0192 6.0553 42 1 1.1102 -1.8444 7.8775 43 1 2.6778 -1.9262 8.7165 44 1 1.5102 -3.2597 8.8803 45 1 2.0481 -5.7676 7.1770 46 1 0.9054 -8.7883 8.0116 47 1 1.2698 -4.1122 4.0196 48 1 2.7945 -4.7850 4.6711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939886324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:09 Heat of formation + Delta-G solvation = -41.439998 kcal Electronic energy + Delta-G solvation = -29387.940960 eV Core-core repulsion = 25442.834826 eV Total energy + Delta-G solvation = -3945.106134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08661 -40.79417 -39.26141 -38.82334 -35.88074 -34.43773 -34.27320 -33.28640 -32.44162 -31.32060 -29.19118 -28.21960 -27.67099 -26.04347 -25.34519 -24.58247 -23.06918 -22.13020 -21.46267 -20.89015 -19.43160 -19.13634 -18.34561 -17.88288 -17.46588 -16.91540 -16.74847 -16.18393 -16.14841 -15.62112 -15.39970 -15.20150 -14.97337 -14.82112 -14.47424 -14.38522 -14.33185 -14.03921 -13.87795 -13.45104 -13.33741 -13.22607 -13.20440 -13.03266 -12.90609 -12.88197 -12.80883 -12.24374 -12.15590 -12.01446 -11.94455 -11.80213 -11.72339 -11.45490 -11.26288 -11.04661 -10.89060 -10.61199 -9.78352 -9.52218 -9.02730 -7.93125 -5.22754 -0.31187 0.20047 1.51735 1.52449 1.58594 1.63807 1.89220 1.96864 2.57742 2.71381 3.13739 3.37337 3.39769 3.71580 3.75828 3.82062 3.88821 3.92497 3.95993 3.99463 4.13909 4.16544 4.21863 4.33266 4.45094 4.46737 4.56057 4.64699 4.67199 4.77941 4.79808 4.83359 4.83903 4.88116 4.88551 5.06386 5.08948 5.10592 5.16822 5.20284 5.21766 5.33676 5.43020 5.44905 5.55786 6.22395 6.27364 6.40258 6.70565 7.03771 7.36017 8.05683 8.31749 9.29028 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003400 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.059821 B = 8233.503198 C = 9352.058624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.303 6.303 5 C 0.354 3.646 6 N -0.552 5.552 7 C 0.166 3.834 8 C -0.209 4.209 9 C -0.011 4.011 10 C -0.231 4.231 11 C 0.578 3.422 12 O -0.566 6.566 13 N -0.608 5.608 14 C 0.120 3.880 15 C -0.103 4.103 16 H 0.085 0.915 17 C -0.129 4.129 18 C 0.172 3.828 19 H 0.060 0.940 20 N -0.715 5.715 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.063 4.063 24 N -0.963 5.963 25 Si 0.965 3.035 26 H -0.277 1.277 27 H -0.297 1.297 28 H -0.282 1.282 29 C 0.086 3.914 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.206 0.794 38 H 0.177 0.823 39 H 0.152 0.848 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.379 0.621 46 H 0.252 0.748 47 H 0.065 0.935 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 11.515 -15.719 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.210 6.210 5 C 0.175 3.825 6 N -0.276 5.276 7 C 0.010 3.990 8 C -0.229 4.229 9 C -0.037 4.037 10 C -0.237 4.237 11 C 0.368 3.632 12 O -0.446 6.446 13 N -0.341 5.341 14 C -0.003 4.003 15 C -0.123 4.123 16 H 0.103 0.897 17 C -0.186 4.186 18 C 0.061 3.939 19 H 0.078 0.922 20 N -0.354 5.354 21 C -0.376 4.376 22 H 0.092 0.908 23 C -0.256 4.256 24 N -0.613 5.613 25 Si 0.795 3.205 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.208 1.208 29 C -0.039 4.039 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.194 0.806 39 H 0.169 0.831 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.212 0.788 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.728 12.818 -16.272 20.893 hybrid contribution -0.260 -1.422 0.922 1.714 sum 2.467 11.396 -15.350 19.276 Atomic orbital electron populations 1.22180 0.93931 1.02247 1.03531 1.22687 0.95208 0.93673 0.87020 1.21899 1.01586 0.92808 1.03856 1.86442 1.78965 1.15670 1.39884 1.19851 0.88950 0.84973 0.88765 1.67464 1.23218 1.14026 1.22869 1.23398 0.88518 0.86729 1.00393 1.22342 1.04089 1.03673 0.92759 1.22048 0.91209 0.91016 0.99436 1.19881 1.14367 0.95478 0.93978 1.17804 0.77707 0.84725 0.82987 1.90740 1.47258 1.19118 1.87504 1.48357 1.59345 1.20872 1.05528 1.22022 1.00634 0.97274 0.80346 1.22435 0.98416 0.96255 0.95158 0.89688 1.21616 1.00749 0.99959 0.96309 1.21499 0.96228 0.85883 0.90255 0.92237 1.42319 1.14412 1.11926 1.66747 1.19514 0.92340 0.96030 1.29666 0.90775 1.25425 1.00457 0.98394 1.01310 1.69781 1.32388 1.14934 1.44151 0.85346 0.79938 0.77457 0.77797 1.20312 1.22386 1.20801 1.23350 0.96471 0.83089 1.01028 0.88365 0.93369 0.92712 0.89161 0.92597 0.87593 0.92387 0.77777 0.80585 0.83066 0.91321 0.90896 0.92514 0.90717 0.93121 0.78822 0.93942 0.91633 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.53 71.98 0.69 -2.55 16 2 C 0.07 1.61 3.11 30.60 0.10 1.71 16 3 C -0.14 -2.72 9.56 71.98 0.69 -2.03 16 4 O -0.30 -9.68 8.43 -70.54 -0.59 -10.27 16 5 C 0.35 10.84 7.44 85.13 0.63 11.47 16 6 N -0.55 -13.75 8.64 -308.00 -2.66 -16.41 16 7 C 0.17 3.04 11.17 84.71 0.95 3.99 16 8 C -0.21 -3.94 10.09 22.32 0.23 -3.71 16 9 C -0.01 -0.29 8.30 22.72 0.19 -0.10 16 10 C -0.23 -7.26 5.44 -19.91 -0.11 -7.37 16 11 C 0.58 20.75 7.38 86.69 0.64 21.39 16 12 O -0.57 -23.56 16.32 12.64 0.21 -23.35 16 13 N -0.61 -20.00 3.33 -815.15 -2.71 -22.71 16 14 C 0.12 3.58 6.47 86.73 0.56 4.14 16 15 C -0.10 -3.12 3.19 -9.60 -0.03 -3.15 16 16 H 0.08 2.61 8.00 -2.39 -0.02 2.59 16 17 C -0.13 -3.54 9.14 71.98 0.66 -2.88 16 18 C 0.17 6.30 3.17 46.46 0.15 6.44 16 19 H 0.06 2.29 8.00 -2.39 -0.02 2.27 16 20 N -0.72 -32.54 5.25 -316.02 -1.66 -34.20 16 21 C -0.24 -12.48 9.96 84.03 0.84 -11.64 16 22 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 24 N -0.96 -55.13 13.06 21.65 0.28 -54.85 16 25 Si 0.97 43.57 29.55 68.60 2.03 45.60 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 29 C 0.09 2.87 4.92 86.93 0.43 3.29 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.01 6.98 -2.39 -0.02 1.99 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.15 3.70 5.78 -2.91 -0.02 3.69 16 40 H 0.07 2.04 7.80 -2.39 -0.02 2.02 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.38 18.50 7.76 -92.71 -0.72 17.78 16 46 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 47 H 0.07 2.23 7.25 -2.38 -0.02 2.21 16 48 H 0.07 2.38 6.92 -2.39 -0.02 2.36 16 Total: -1.00 -68.48 392.41 2.19 -66.28 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.24 Total: 33.81 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 7.06 Total: 16.10 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -6.75 Total: -128.17 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.39 Total: -33.63 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.48 2.19 -66.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939886324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.843 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds