Wall clock time and date at job start Tue Mar 31 2020 17:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.52061 * 2 1 4 4 C 1.53187 * 109.50001 * 120.07570 * 2 1 3 5 5 N 1.46925 * 108.77654 * 174.58776 * 4 2 1 6 6 C 1.36934 * 120.62917 * 126.37397 * 5 4 2 7 7 H 1.08001 * 120.00435 * 332.81016 * 6 5 4 8 8 C 1.38808 * 120.00277 * 152.81246 * 6 5 4 9 9 N 1.31622 * 120.00444 * 159.74964 * 8 6 5 10 10 Si 1.86803 * 119.99858 * 339.75408 * 8 6 5 11 11 H 1.48494 * 109.47250 * 94.89981 * 10 8 6 12 12 H 1.48505 * 109.46993 * 214.90161 * 10 8 6 13 13 H 1.48501 * 109.46844 * 334.90001 * 10 8 6 14 14 C 1.46926 * 118.73778 * 306.39357 * 5 4 2 15 15 C 1.53188 * 108.77715 * 53.61201 * 14 5 4 16 16 C 1.53035 * 109.49694 * 239.92038 * 2 1 3 17 17 H 1.09002 * 109.45020 * 298.68922 * 16 2 1 18 18 N 1.46496 * 109.46553 * 58.66317 * 16 2 1 19 19 C 1.34780 * 120.00023 * 205.06912 * 18 16 2 20 20 O 1.21695 * 120.00015 * 359.97438 * 19 18 16 21 21 C 1.46679 * 119.99784 * 179.97438 * 19 18 16 22 22 C 1.38156 * 126.19001 * 179.97438 * 21 19 18 23 23 C 1.38935 * 106.95367 * 180.28494 * 22 21 19 24 24 C 1.36274 * 108.01953 * 359.64099 * 23 22 21 25 25 N 1.34744 * 108.83847 * 0.32661 * 24 23 22 26 26 H 0.96996 * 125.71577 * 179.81909 * 25 24 23 27 27 C 1.51088 * 122.58494 * 180.02562 * 24 23 22 28 28 C 1.53543 * 107.71496 * 344.46359 * 27 24 23 29 29 O 1.42994 * 109.67843 * 48.03604 * 28 27 24 30 30 C 1.43422 * 114.32980 * 288.94515 * 29 28 27 31 31 H 1.09004 * 109.47105 * 180.08210 * 1 2 3 32 32 H 1.09007 * 109.47343 * 300.07942 * 1 2 3 33 33 H 1.09001 * 109.47478 * 60.08652 * 1 2 3 34 34 H 1.09003 * 109.58828 * 54.80286 * 4 2 1 35 35 H 1.08999 * 109.58853 * 294.37890 * 4 2 1 36 36 H 0.97001 * 120.00267 * 179.97438 * 9 8 6 37 37 H 1.08989 * 109.58738 * 293.81659 * 14 5 4 38 38 H 1.09004 * 109.58218 * 173.39693 * 14 5 4 39 39 H 1.08993 * 109.49762 * 185.41290 * 15 14 5 40 40 H 1.09006 * 109.50183 * 65.30857 * 15 14 5 41 41 H 0.97002 * 119.99637 * 25.06084 * 18 16 2 42 42 H 1.08007 * 126.52380 * 0.02562 * 22 21 19 43 43 H 1.09004 * 109.81619 * 104.02010 * 27 24 23 44 44 H 1.09002 * 109.81003 * 224.85357 * 27 24 23 45 45 H 1.09004 * 109.43934 * 168.09540 * 28 27 24 46 46 H 1.08996 * 109.44204 * 288.01079 * 28 27 24 47 47 H 1.09000 * 109.76353 * 170.32374 * 30 29 28 48 48 H 1.09001 * 109.76785 * 291.04642 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8289 1.1696 6 6 4.2935 -0.3783 2.1941 7 1 3.9433 0.4165 2.8360 8 6 5.5435 -0.9429 2.4076 9 7 6.4533 -0.2865 3.0959 10 14 5.9345 -2.6343 1.7179 11 1 6.6142 -2.4888 0.4057 12 1 6.8256 -3.3589 2.6593 13 1 4.6744 -3.3998 1.5405 14 6 4.1053 -1.4266 -0.0308 15 6 3.5709 -0.6949 -1.2660 16 6 2.0407 -0.7230 -1.2483 17 1 1.6968 -1.7573 -1.2350 18 7 1.5265 -0.0530 -2.4453 19 6 1.3972 -0.7387 -3.5984 20 8 1.7080 -1.9144 -3.6453 21 6 0.8818 -0.0679 -4.7967 22 6 0.6983 -0.6441 -6.0388 23 6 0.2012 0.3472 -6.8758 24 6 0.0814 1.4928 -6.1476 25 7 0.4933 1.2523 -4.8874 26 1 0.5134 1.8994 -4.1651 27 6 -0.4332 2.7837 -6.7404 28 6 -0.3865 2.6472 -8.2691 29 8 -0.9718 1.4023 -8.6594 30 6 -0.1836 0.2500 -8.3310 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.6053 -1.7215 1.2981 35 1 1.7637 -0.1578 2.1389 36 1 7.3267 -0.6812 3.2455 37 1 3.8376 -2.4816 -0.0866 38 1 5.1896 -1.3244 0.0138 39 1 3.9335 -1.1896 -2.1670 40 1 3.9158 0.3390 -1.2541 41 1 1.2790 0.8842 -2.4079 42 1 0.9061 -1.6690 -6.3091 43 1 -1.4595 2.9560 -6.4161 44 1 0.1985 3.6135 -6.4233 45 1 -0.9419 3.4675 -8.7237 46 1 0.6499 2.6810 -8.6048 47 1 -0.7659 -0.6556 -8.5015 48 1 0.7159 0.2310 -8.9463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942125827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:58 Heat of formation + Delta-G solvation = -16.826091 kcal Electronic energy + Delta-G solvation = -29013.284609 eV Core-core repulsion = 25069.245814 eV Total energy + Delta-G solvation = -3944.038795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96521 -39.78955 -38.40132 -37.70393 -34.81976 -32.90187 -32.82326 -31.86082 -31.61446 -30.30502 -29.17196 -26.53853 -26.05608 -24.78668 -23.94617 -22.54824 -21.74422 -21.39274 -20.34160 -19.82711 -19.33037 -18.41932 -16.85587 -16.68648 -16.24567 -16.21260 -15.71983 -15.13245 -15.06299 -14.69724 -14.45774 -14.35686 -14.04688 -13.84587 -13.58627 -13.52288 -13.34036 -13.15759 -12.91148 -12.76825 -12.45497 -12.15250 -11.98769 -11.79415 -11.70845 -11.62228 -11.30811 -11.07114 -10.66664 -10.62277 -10.24224 -10.21068 -10.13184 -10.03924 -9.78089 -9.51571 -9.14963 -8.93769 -8.64981 -8.25121 -7.02992 -5.97650 -3.34359 1.23795 2.28409 2.63998 3.11435 3.31190 3.33427 3.46714 3.49214 3.52498 4.19755 4.41885 4.51577 4.61426 4.72105 4.75258 4.85895 4.88039 4.94643 5.08357 5.12999 5.20229 5.20876 5.25335 5.38735 5.39027 5.48337 5.63745 5.67744 5.77499 5.81720 5.84451 5.95775 6.02162 6.05422 6.18861 6.29735 6.34787 6.41060 6.53551 6.56115 6.59959 6.64466 6.67476 6.76765 6.87403 7.02181 7.49416 7.91745 8.16947 8.29061 8.89766 9.68790 10.05647 11.18016 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.002475 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.761123 B =11309.446930 C =11639.488029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.075 0.925 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.158 3.842 17 H 0.086 0.914 18 N -0.722 5.722 19 C 0.587 3.413 20 O -0.527 6.527 21 C -0.051 4.051 22 C -0.089 4.089 23 C -0.221 4.221 24 C 0.052 3.948 25 N -0.524 5.524 26 H 0.416 0.584 27 C -0.087 4.087 28 C 0.069 3.931 29 O -0.380 6.380 30 C 0.136 3.864 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.389 0.611 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 7.278 -21.238 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.182 4.182 16 C 0.055 3.945 17 H 0.104 0.896 18 N -0.372 5.372 19 C 0.374 3.626 20 O -0.403 6.403 21 C -0.163 4.163 22 C -0.115 4.115 23 C -0.228 4.228 24 C -0.067 4.067 25 N -0.119 5.119 26 H 0.253 0.747 27 C -0.125 4.125 28 C -0.009 4.009 29 O -0.299 6.299 30 C 0.060 3.940 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.222 0.778 42 H 0.168 0.832 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.120 0.880 46 H 0.076 0.924 47 H 0.121 0.879 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.703 6.467 -21.064 27.058 hybrid contribution 0.624 -0.077 0.308 0.700 sum -15.079 6.389 -20.756 26.439 Atomic orbital electron populations 1.21766 0.95435 1.01808 1.00958 1.21977 0.94815 1.00846 0.96077 0.90665 1.20915 0.84424 0.97089 0.94443 1.44397 1.00725 1.71838 1.15998 1.18899 0.97761 1.14202 1.08124 0.89638 1.25266 0.96424 0.98079 0.97731 1.69829 1.04535 1.37177 1.43568 0.86968 0.77933 0.86821 0.77105 1.21634 1.23102 1.19310 1.21322 0.98114 0.94854 0.85446 1.22417 0.94353 1.01957 0.99498 1.21057 0.94040 0.97214 0.82224 0.89569 1.46142 1.66490 1.13813 1.10708 1.17009 0.77894 0.86222 0.81513 1.90857 1.50349 1.15091 1.84043 1.20625 1.14405 0.84140 0.97173 1.20823 1.01051 0.99393 0.90227 1.19923 1.11315 0.93845 0.97715 1.20231 1.04258 0.97590 0.84637 1.41622 1.49612 1.10257 1.10387 0.74676 1.21028 1.02021 0.92589 0.96905 1.22539 0.99149 0.87113 0.92073 1.88022 1.47088 1.14041 1.80715 1.21053 0.95148 0.88720 0.89103 0.92694 0.92399 0.93613 0.95584 0.91342 0.92738 0.95264 0.90759 0.92173 0.91685 0.77809 0.83174 0.89257 0.89510 0.87995 0.92447 0.87871 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.03 37.16 0.34 -1.36 16 2 C -0.12 -1.74 2.46 -90.51 -0.22 -1.97 16 3 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 4 C 0.16 2.98 5.80 -3.71 -0.02 2.95 16 5 N -0.61 -14.16 2.77 -172.33 -0.48 -14.64 16 6 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 7 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 8 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 9 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 10 Si 0.88 22.63 24.35 -169.99 -4.14 18.49 16 11 H -0.29 -7.24 6.70 56.52 0.38 -6.86 16 12 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.27 -6.78 6.45 56.52 0.36 -6.42 16 14 C 0.13 2.86 4.19 -3.71 -0.02 2.84 16 15 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 16 C 0.16 2.50 1.88 -67.89 -0.13 2.37 16 17 H 0.09 1.53 7.57 -51.93 -0.39 1.14 16 18 N -0.72 -9.28 4.36 -55.07 -0.24 -9.52 16 19 C 0.59 8.53 7.75 -12.85 -0.10 8.43 16 20 O -0.53 -9.72 16.54 5.19 0.09 -9.64 16 21 C -0.05 -0.61 7.07 -81.75 -0.58 -1.19 16 22 C -0.09 -1.05 10.63 -39.35 -0.42 -1.47 16 23 C -0.22 -2.24 6.02 -105.01 -0.63 -2.87 16 24 C 0.05 0.46 7.14 -81.83 -0.58 -0.12 16 25 N -0.52 -4.64 5.97 -5.43 -0.03 -4.67 16 26 H 0.42 2.52 8.19 -40.82 -0.33 2.18 16 27 C -0.09 -0.50 6.56 -27.41 -0.18 -0.68 16 28 C 0.07 0.41 6.78 37.44 0.25 0.66 16 29 O -0.38 -3.31 10.75 -35.23 -0.38 -3.69 16 30 C 0.14 1.13 7.25 36.07 0.26 1.39 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.47 7.36 -51.93 -0.38 0.09 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.03 0.66 6.98 -51.93 -0.36 0.30 16 38 H 0.07 1.81 4.49 -51.93 -0.23 1.58 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 3.82 7.44 -40.82 -0.30 3.52 16 42 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 47 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -34.37 374.51 -8.72 -43.08 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.53 Total: 2.45 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.42 Total: -0.54 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.02 Total: -55.81 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.29 Total: -13.33 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.14 Total: 18.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.37 -8.72 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942125827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.255 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds