Wall clock time and date at job start Tue Mar 31 2020 17:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.50252 * 2 1 4 4 C 1.53189 * 109.49575 * 239.90029 * 2 1 3 5 5 N 1.46929 * 108.77536 * 185.41809 * 4 2 1 6 6 C 1.36942 * 120.62629 * 233.62993 * 5 4 2 7 7 H 1.07998 * 120.00054 * 27.66093 * 6 5 4 8 8 C 1.38814 * 119.99596 * 207.65682 * 6 5 4 9 9 N 1.31615 * 120.00327 * 17.37189 * 8 6 5 10 10 Si 1.86799 * 119.99489 * 197.37313 * 8 6 5 11 11 H 1.48494 * 109.47616 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46984 * 120.00230 * 10 8 6 13 13 H 1.48498 * 109.47300 * 239.99753 * 10 8 6 14 14 C 1.46918 * 118.74043 * 53.60718 * 5 4 2 15 15 C 1.53192 * 108.77831 * 306.38985 * 14 5 4 16 16 C 1.53044 * 109.49742 * 120.06635 * 2 1 3 17 17 H 1.08997 * 109.46491 * 61.30536 * 16 2 1 18 18 N 1.46505 * 109.45918 * 301.33324 * 16 2 1 19 19 C 1.34775 * 120.00150 * 155.00246 * 18 16 2 20 20 O 1.21691 * 119.99696 * 359.97438 * 19 18 16 21 21 C 1.46678 * 120.00089 * 180.02562 * 19 18 16 22 22 C 1.38154 * 126.19136 * 180.02562 * 21 19 18 23 23 C 1.38945 * 106.95057 * 179.97438 * 22 21 19 24 24 C 1.36271 * 108.01836 * 0.02755 * 23 22 21 25 25 N 1.34735 * 108.84110 * 359.70377 * 24 23 22 26 26 H 0.96998 * 125.71589 * 180.30691 * 25 24 23 27 27 C 1.51095 * 122.57768 * 179.88719 * 24 23 22 28 28 C 1.53547 * 107.71679 * 344.11498 * 27 24 23 29 29 O 1.42983 * 109.69132 * 48.02618 * 28 27 24 30 30 C 1.43426 * 114.33982 * 288.97270 * 29 28 27 31 31 H 1.09005 * 109.47036 * 299.93470 * 1 2 3 32 32 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47303 * 59.93662 * 1 2 3 34 34 H 1.09000 * 109.59001 * 305.19988 * 4 2 1 35 35 H 1.08992 * 109.58782 * 65.62607 * 4 2 1 36 36 H 0.97002 * 119.99926 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.58636 * 186.60709 * 14 5 4 38 38 H 1.08998 * 109.58969 * 66.18160 * 14 5 4 39 39 H 1.08993 * 109.49938 * 294.69091 * 15 14 5 40 40 H 1.09000 * 109.52709 * 174.60053 * 15 14 5 41 41 H 0.97001 * 119.99671 * 335.00115 * 18 16 2 42 42 H 1.08000 * 126.52413 * 0.02562 * 22 21 19 43 43 H 1.08998 * 109.81158 * 224.55910 * 27 24 23 44 44 H 1.08997 * 109.85545 * 103.69150 * 27 24 23 45 45 H 1.09000 * 109.43432 * 287.95341 * 28 27 24 46 46 H 1.08999 * 109.43072 * 168.09454 * 28 27 24 47 47 H 1.09008 * 109.75931 * 291.11312 * 30 29 28 48 48 H 1.08998 * 109.80719 * 170.36850 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7242 -1.2493 5 7 3.5045 -0.8296 -1.1693 6 6 4.2935 -0.3793 -2.1940 7 1 3.9465 0.4204 -2.8314 8 6 5.5394 -0.9509 -2.4133 9 7 5.8285 -2.1215 -1.8858 10 14 6.8055 -0.0583 -3.4572 11 1 6.2383 1.2302 -3.9295 12 1 8.0204 0.2045 -2.6446 13 1 7.1649 -0.8999 -4.6267 14 6 4.1052 -1.4268 0.0312 15 6 3.5709 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2486 17 1 1.6969 -1.7570 1.2358 18 7 1.5265 -0.0523 2.4454 19 6 1.3985 -0.7372 3.5990 20 8 1.7096 -1.9127 3.6464 21 6 0.8831 -0.0660 4.7971 22 6 0.7008 -0.6414 6.0398 23 6 0.1976 0.3487 6.8747 24 6 0.0800 1.4945 6.1466 25 7 0.4985 1.2554 4.8884 26 1 0.5231 1.9035 4.1671 27 6 -0.4417 2.7837 6.7371 28 6 -1.1421 2.4420 8.0601 29 8 -0.3029 1.5895 8.8433 30 6 -0.1751 0.2551 8.3332 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5148 -0.8894 34 1 1.6052 -1.7220 -1.2975 35 1 1.7637 -0.1587 -2.1388 36 1 6.6990 -2.5210 -2.0394 37 1 5.1895 -1.3248 -0.0134 38 1 3.8374 -2.4819 0.0875 39 1 3.9159 0.3391 1.2539 40 1 3.9334 -1.1886 2.1677 41 1 1.2782 0.8847 2.4074 42 1 0.9105 -1.6656 6.3109 43 1 -1.1527 3.2434 6.0507 44 1 0.3865 3.4674 6.9236 45 1 -2.0828 1.9325 7.8514 46 1 -1.3425 3.3602 8.6121 47 1 -1.1234 -0.2720 8.4382 48 1 0.6043 -0.2761 8.8796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942125828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:01 Heat of formation + Delta-G solvation = -22.563341 kcal Electronic energy + Delta-G solvation = -28910.103327 eV Core-core repulsion = 24965.815746 eV Total energy + Delta-G solvation = -3944.287581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90228 -39.63745 -38.31224 -37.48506 -34.61985 -32.84078 -32.77501 -31.76312 -31.20973 -29.99596 -29.07821 -26.19672 -25.80836 -24.79584 -23.93753 -22.57744 -21.56382 -21.03724 -20.20421 -19.59222 -19.26221 -18.31108 -16.80758 -16.61333 -16.18004 -15.99251 -15.59784 -15.03835 -14.85225 -14.65886 -14.34124 -13.97966 -13.90464 -13.82938 -13.55656 -13.34520 -13.28502 -12.90510 -12.79577 -12.64599 -12.41610 -12.12344 -11.74358 -11.54696 -11.35145 -11.27468 -11.10500 -10.86525 -10.68893 -10.40414 -10.24510 -10.18002 -10.09379 -9.97262 -9.82322 -9.52437 -9.08992 -8.80517 -8.46799 -8.18207 -6.71992 -5.81077 -3.23970 1.31380 2.34506 2.69950 3.23793 3.35602 3.41363 3.43139 3.45061 3.50626 4.24038 4.45876 4.46561 4.68381 4.75238 4.82575 4.92646 5.07004 5.13154 5.16602 5.23598 5.25051 5.36453 5.42490 5.43438 5.53498 5.56810 5.72671 5.84944 5.88594 5.92769 6.04052 6.18861 6.21042 6.29338 6.38768 6.44824 6.56356 6.62420 6.63412 6.74704 6.80772 6.87718 6.91217 7.08326 7.34448 7.60916 7.66516 7.77265 8.29059 8.41927 9.18012 9.81381 10.37698 11.27452 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.002320 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.615051 B =12065.849206 C =12191.482919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.173 3.827 15 C -0.148 4.148 16 C 0.158 3.842 17 H 0.085 0.915 18 N -0.722 5.722 19 C 0.585 3.415 20 O -0.526 6.526 21 C -0.049 4.049 22 C -0.090 4.090 23 C -0.221 4.221 24 C 0.050 3.950 25 N -0.524 5.524 26 H 0.415 0.585 27 C -0.087 4.087 28 C 0.069 3.931 29 O -0.380 6.380 30 C 0.137 3.863 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.022 0.978 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.387 0.613 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 10.401 17.849 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 H 0.088 0.912 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.055 3.945 17 H 0.103 0.897 18 N -0.372 5.372 19 C 0.372 3.628 20 O -0.402 6.402 21 C -0.161 4.161 22 C -0.116 4.116 23 C -0.228 4.228 24 C -0.069 4.069 25 N -0.119 5.119 26 H 0.253 0.747 27 C -0.125 4.125 28 C -0.008 4.008 29 O -0.299 6.299 30 C 0.060 3.940 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.219 0.781 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.080 0.920 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.324 9.560 17.817 25.370 hybrid contribution 0.560 1.133 -1.272 1.793 sum -14.763 10.693 16.545 24.618 Atomic orbital electron populations 1.21771 0.95831 1.01701 1.00634 1.21981 0.94449 1.00546 0.96593 0.91178 1.20887 0.86063 0.96658 0.93638 1.44115 0.99250 1.71462 1.16650 1.19201 0.98197 1.12395 1.08645 0.91601 1.25056 0.99931 0.95366 0.99269 1.70044 1.21868 1.14574 1.47908 0.86240 0.81717 0.79206 0.79685 1.20297 1.21553 1.21686 1.20771 0.99506 0.93141 0.81893 1.22588 0.93737 1.01526 1.00944 1.21108 0.94650 0.96934 0.81772 0.89723 1.46208 1.66418 1.13705 1.10837 1.17004 0.78030 0.86271 0.81532 1.90862 1.50238 1.15078 1.84012 1.20686 1.14191 0.83994 0.97257 1.20827 1.01028 0.99497 0.90291 1.19915 1.11416 0.93983 0.97468 1.20210 1.04630 0.97467 0.84616 1.41623 1.49633 1.10152 1.10494 0.74720 1.21019 1.01138 0.92778 0.97575 1.22529 0.92543 0.95077 0.90685 1.88020 1.69335 1.22459 1.50055 1.21054 1.00839 0.83496 0.88613 0.93815 0.92739 0.92662 0.96093 0.92346 0.93579 0.89142 0.96032 0.92750 0.92648 0.78069 0.83162 0.89604 0.89279 0.92507 0.88052 0.92007 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.03 37.16 0.34 -1.49 16 2 C -0.11 -1.85 2.46 -90.50 -0.22 -2.07 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.15 3.13 5.80 -3.71 -0.02 3.11 16 5 N -0.59 -14.63 2.99 -172.33 -0.52 -15.14 16 6 C -0.25 -6.89 9.59 -15.06 -0.14 -7.04 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 10 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.17 4.20 5.31 -3.71 -0.02 4.18 16 15 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 16 C 0.16 2.71 1.88 -67.88 -0.13 2.59 16 17 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 18 N -0.72 -10.03 4.36 -55.07 -0.24 -10.27 16 19 C 0.59 9.07 7.75 -12.85 -0.10 8.97 16 20 O -0.53 -10.28 16.54 5.20 0.09 -10.19 16 21 C -0.05 -0.62 7.06 -81.75 -0.58 -1.20 16 22 C -0.09 -1.13 10.63 -39.35 -0.42 -1.54 16 23 C -0.22 -2.35 6.02 -105.01 -0.63 -2.98 16 24 C 0.05 0.47 7.14 -81.83 -0.58 -0.12 16 25 N -0.52 -4.95 5.97 -5.43 -0.03 -4.98 16 26 H 0.42 2.76 8.19 -40.82 -0.33 2.42 16 27 C -0.09 -0.53 6.56 -27.41 -0.18 -0.71 16 28 C 0.07 0.43 6.78 37.44 0.25 0.68 16 29 O -0.38 -3.46 10.74 -35.23 -0.38 -3.84 16 30 C 0.14 1.18 7.25 36.07 0.26 1.44 16 31 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 2.46 6.03 -51.93 -0.31 2.14 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.39 4.16 7.44 -40.82 -0.30 3.85 16 42 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -33.38 381.11 -9.76 -43.14 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.60 Total: 3.89 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.41 Total: 0.71 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.17 Total: -55.99 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.29 Total: -14.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.38 -9.76 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942125828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.579 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds