Wall clock time and date at job start Tue Mar 31 2020 17:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.50252 * 2 1 4 4 C 1.53189 * 109.49575 * 239.90029 * 2 1 3 5 5 N 1.46929 * 108.77536 * 185.41809 * 4 2 1 6 6 C 1.36942 * 120.62629 * 233.62993 * 5 4 2 7 7 H 1.07998 * 120.00054 * 27.66093 * 6 5 4 8 8 C 1.38814 * 119.99596 * 207.65682 * 6 5 4 9 9 N 1.31615 * 120.00327 * 17.37189 * 8 6 5 10 10 Si 1.86799 * 119.99489 * 197.37313 * 8 6 5 11 11 H 1.48494 * 109.47616 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46984 * 120.00230 * 10 8 6 13 13 H 1.48498 * 109.47300 * 239.99753 * 10 8 6 14 14 C 1.46918 * 118.74043 * 53.60718 * 5 4 2 15 15 C 1.53192 * 108.77831 * 306.38985 * 14 5 4 16 16 C 1.53044 * 109.49742 * 120.06635 * 2 1 3 17 17 H 1.08997 * 109.46491 * 61.30536 * 16 2 1 18 18 N 1.46505 * 109.45918 * 301.33324 * 16 2 1 19 19 C 1.34775 * 120.00150 * 155.00246 * 18 16 2 20 20 O 1.21691 * 119.99696 * 359.97438 * 19 18 16 21 21 C 1.46678 * 120.00089 * 180.02562 * 19 18 16 22 22 C 1.38154 * 126.19136 * 180.02562 * 21 19 18 23 23 C 1.38945 * 106.95057 * 179.97438 * 22 21 19 24 24 C 1.36271 * 108.01836 * 0.02755 * 23 22 21 25 25 N 1.34735 * 108.84110 * 359.70377 * 24 23 22 26 26 H 0.96998 * 125.71589 * 180.30691 * 25 24 23 27 27 C 1.51095 * 122.57768 * 179.88719 * 24 23 22 28 28 C 1.53547 * 107.71679 * 344.11498 * 27 24 23 29 29 O 1.42983 * 109.69132 * 48.02618 * 28 27 24 30 30 C 1.43426 * 114.33982 * 288.97270 * 29 28 27 31 31 H 1.09005 * 109.47036 * 299.93470 * 1 2 3 32 32 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47303 * 59.93662 * 1 2 3 34 34 H 1.09000 * 109.59001 * 305.19988 * 4 2 1 35 35 H 1.08992 * 109.58782 * 65.62607 * 4 2 1 36 36 H 0.97002 * 119.99926 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.58636 * 186.60709 * 14 5 4 38 38 H 1.08998 * 109.58969 * 66.18160 * 14 5 4 39 39 H 1.08993 * 109.49938 * 294.69091 * 15 14 5 40 40 H 1.09000 * 109.52709 * 174.60053 * 15 14 5 41 41 H 0.97001 * 119.99671 * 335.00115 * 18 16 2 42 42 H 1.08000 * 126.52413 * 0.02562 * 22 21 19 43 43 H 1.08998 * 109.81158 * 224.55910 * 27 24 23 44 44 H 1.08997 * 109.85545 * 103.69150 * 27 24 23 45 45 H 1.09000 * 109.43432 * 287.95341 * 28 27 24 46 46 H 1.08999 * 109.43072 * 168.09454 * 28 27 24 47 47 H 1.09008 * 109.75931 * 291.11312 * 30 29 28 48 48 H 1.08998 * 109.80719 * 170.36850 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7242 -1.2493 5 7 3.5045 -0.8296 -1.1693 6 6 4.2935 -0.3793 -2.1940 7 1 3.9465 0.4204 -2.8314 8 6 5.5394 -0.9509 -2.4133 9 7 5.8285 -2.1215 -1.8858 10 14 6.8055 -0.0583 -3.4572 11 1 6.2383 1.2302 -3.9295 12 1 8.0204 0.2045 -2.6446 13 1 7.1649 -0.8999 -4.6267 14 6 4.1052 -1.4268 0.0312 15 6 3.5709 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2486 17 1 1.6969 -1.7570 1.2358 18 7 1.5265 -0.0523 2.4454 19 6 1.3985 -0.7372 3.5990 20 8 1.7096 -1.9127 3.6464 21 6 0.8831 -0.0660 4.7971 22 6 0.7008 -0.6414 6.0398 23 6 0.1976 0.3487 6.8747 24 6 0.0800 1.4945 6.1466 25 7 0.4985 1.2554 4.8884 26 1 0.5231 1.9035 4.1671 27 6 -0.4417 2.7837 6.7371 28 6 -1.1421 2.4420 8.0601 29 8 -0.3029 1.5895 8.8433 30 6 -0.1751 0.2551 8.3332 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5148 -0.8894 34 1 1.6052 -1.7220 -1.2975 35 1 1.7637 -0.1587 -2.1388 36 1 6.6990 -2.5210 -2.0394 37 1 5.1895 -1.3248 -0.0134 38 1 3.8374 -2.4819 0.0875 39 1 3.9159 0.3391 1.2539 40 1 3.9334 -1.1886 2.1677 41 1 1.2782 0.8847 2.4074 42 1 0.9105 -1.6656 6.3109 43 1 -1.1527 3.2434 6.0507 44 1 0.3865 3.4674 6.9236 45 1 -2.0828 1.9325 7.8514 46 1 -1.3425 3.3602 8.6121 47 1 -1.1234 -0.2720 8.4382 48 1 0.6043 -0.2761 8.8796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942125828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:00 Heat of formation + Delta-G solvation = -45.360888 kcal Electronic energy + Delta-G solvation = -28911.091903 eV Core-core repulsion = 24965.815746 eV Total energy + Delta-G solvation = -3945.276157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.73295 -40.91805 -39.27038 -38.72439 -36.27799 -34.33362 -33.41803 -32.98168 -32.62663 -31.59387 -29.94552 -27.46993 -27.35482 -26.04595 -24.73958 -23.87544 -22.75227 -22.64596 -21.43755 -20.90396 -20.02339 -19.42630 -18.68109 -17.35283 -17.31899 -16.91445 -16.73500 -16.49121 -15.98259 -15.73990 -15.63524 -15.35671 -15.19617 -14.83653 -14.80889 -14.59337 -14.46415 -14.27962 -14.02090 -13.64771 -13.47713 -13.11438 -13.05697 -12.99943 -12.77742 -12.65529 -12.37720 -12.32639 -12.11536 -12.05378 -11.75554 -11.72786 -11.62393 -11.41770 -11.11085 -10.75895 -10.60784 -10.16346 -9.89806 -9.02613 -8.74911 -7.89967 -5.36206 0.34916 1.45225 1.47019 1.51565 1.57708 1.88642 2.07927 2.28951 2.49239 2.97236 3.25863 3.57211 3.65410 3.69881 3.81258 3.97442 3.98977 4.04705 4.10736 4.19696 4.32926 4.36504 4.54893 4.55876 4.65482 4.67065 4.67572 4.77962 4.80905 4.82693 4.84303 4.93855 4.97550 5.01893 5.05915 5.08055 5.12529 5.24188 5.34205 5.44087 5.47197 5.60754 5.65356 5.66804 5.76341 6.24093 6.35144 6.35985 6.53032 7.10115 7.11448 7.80889 8.33775 9.17305 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.002320 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.615051 B =12065.849206 C =12191.482919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.260 4.260 7 H 0.075 0.925 8 C -0.055 4.055 9 N -0.938 5.938 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.183 3.817 15 C -0.132 4.132 16 C 0.171 3.829 17 H 0.058 0.942 18 N -0.705 5.705 19 C 0.586 3.414 20 O -0.576 6.576 21 C -0.074 4.074 22 C -0.102 4.102 23 C -0.239 4.239 24 C 0.067 3.933 25 N -0.509 5.509 26 H 0.430 0.570 27 C -0.084 4.084 28 C 0.061 3.939 29 O -0.398 6.398 30 C 0.137 3.863 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.010 0.990 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.057 0.943 38 H -0.011 1.011 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.407 0.593 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.126 0.874 47 H 0.074 0.926 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.091 14.218 18.591 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.390 4.390 7 H 0.092 0.908 8 C -0.250 4.250 9 N -0.584 5.584 10 Si 0.797 3.203 11 H -0.185 1.185 12 H -0.220 1.220 13 H -0.221 1.221 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.066 3.934 17 H 0.076 0.924 18 N -0.355 5.355 19 C 0.375 3.625 20 O -0.456 6.456 21 C -0.186 4.186 22 C -0.128 4.128 23 C -0.245 4.245 24 C -0.054 4.054 25 N -0.105 5.105 26 H 0.271 0.729 27 C -0.122 4.122 28 C -0.016 4.016 29 O -0.317 6.317 30 C 0.060 3.940 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.007 0.993 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.243 0.757 42 H 0.159 0.841 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.144 0.856 47 H 0.092 0.908 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.621 13.451 18.545 28.903 hybrid contribution 1.182 -0.044 -1.429 1.855 sum -16.439 13.407 17.116 27.258 Atomic orbital electron populations 1.21716 0.92682 1.01909 1.02843 1.21767 0.96851 0.99923 0.93399 0.89978 1.21092 0.83474 0.96828 0.96326 1.44355 1.01151 1.71389 1.16290 1.19594 0.98603 1.12135 1.08672 0.90754 1.25876 1.01992 0.96051 1.01098 1.70216 1.21980 1.16302 1.49950 0.85183 0.78919 0.78493 0.77701 1.18527 1.21950 1.22074 1.20464 0.97737 0.92092 0.84111 1.22333 0.95996 1.00867 0.98061 1.20708 0.92518 0.96346 0.83817 0.92391 1.45828 1.65810 1.14489 1.09419 1.17332 0.77111 0.85724 0.82289 1.90837 1.52532 1.17404 1.84843 1.20150 1.16738 0.85625 0.96105 1.20970 1.01138 0.99792 0.90942 1.20186 1.11811 0.94001 0.98521 1.20838 1.02140 0.98431 0.84014 1.41526 1.48716 1.09078 1.11188 0.72933 1.21209 1.02073 0.91066 0.97851 1.22815 0.92320 0.95683 0.90796 1.88002 1.70112 1.22662 1.50911 1.21090 1.01516 0.83906 0.87442 0.91203 0.93602 0.90854 0.97230 0.91402 0.94161 0.92508 0.99300 0.91946 0.93673 0.75659 0.84090 0.86622 0.88318 0.91810 0.85635 0.90850 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.03 71.98 0.65 -2.38 16 2 C -0.10 -3.00 2.46 -10.72 -0.03 -3.03 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.15 5.96 5.80 86.36 0.50 6.46 16 5 N -0.61 -30.64 2.99 -699.12 -2.09 -32.73 16 6 C -0.26 -14.16 9.59 84.03 0.81 -13.35 16 7 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 8 C -0.06 -3.10 4.91 84.86 0.42 -2.68 16 9 N -0.94 -56.95 11.19 21.65 0.24 -56.71 16 10 Si 0.97 44.92 29.59 68.60 2.03 46.95 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 14 C 0.18 9.32 5.31 86.36 0.46 9.78 16 15 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 16 C 0.17 5.82 1.88 45.02 0.08 5.91 16 17 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 18 N -0.71 -18.65 4.36 -446.36 -1.95 -20.60 16 19 C 0.59 18.14 7.75 86.45 0.67 18.81 16 20 O -0.58 -23.49 16.54 -4.32 -0.07 -23.56 16 21 C -0.07 -1.82 7.06 40.37 0.29 -1.53 16 22 C -0.10 -2.52 10.63 22.42 0.24 -2.28 16 23 C -0.24 -4.71 6.02 -20.11 -0.12 -4.83 16 24 C 0.07 1.05 7.14 41.78 0.30 1.35 16 25 N -0.51 -8.19 5.97 -171.10 -1.02 -9.21 16 26 H 0.43 4.06 8.19 -92.71 -0.76 3.30 16 27 C -0.08 -0.67 6.56 30.16 0.20 -0.47 16 28 C 0.06 0.52 6.78 72.17 0.49 1.01 16 29 O -0.40 -6.27 10.74 -148.98 -1.60 -7.87 16 30 C 0.14 2.17 7.25 71.27 0.52 2.68 16 31 H 0.07 1.25 7.36 -2.38 -0.02 1.23 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.06 3.26 6.03 -2.39 -0.01 3.25 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.41 7.49 7.44 -92.71 -0.69 6.80 16 42 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.47 8.09 -2.39 -0.02 0.45 16 46 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -76.63 381.11 0.71 -75.92 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.47 Total: 17.61 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.64 Total: 10.21 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -4.82 Total: -119.25 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.67 Total: -31.43 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.63 0.71 -75.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942125828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal (2) G-P(sol) polarization free energy of solvation -76.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds