Wall clock time and date at job start Tue Mar 31 2020 17:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49850 * 2 1 4 4 C 1.53192 * 109.49821 * 120.09415 * 2 1 3 5 5 N 1.46930 * 108.77678 * 174.58491 * 4 2 1 6 6 C 1.36938 * 120.62862 * 126.41406 * 5 4 2 7 7 H 1.07996 * 120.00071 * 207.68083 * 6 5 4 8 8 C 1.38817 * 120.00153 * 27.67731 * 6 5 4 9 9 N 1.31625 * 119.99753 * 17.35615 * 8 6 5 10 10 Si 1.86794 * 120.00113 * 197.35697 * 8 6 5 11 11 H 1.48505 * 109.47262 * 89.99971 * 10 8 6 12 12 H 1.48503 * 109.47084 * 209.99775 * 10 8 6 13 13 H 1.48496 * 109.47114 * 329.99771 * 10 8 6 14 14 C 1.46927 * 118.73920 * 306.39567 * 5 4 2 15 15 C 1.53184 * 108.76570 * 53.61261 * 14 5 4 16 16 C 1.53039 * 109.31639 * 305.34398 * 15 14 5 17 17 H 1.08996 * 109.46431 * 181.39365 * 16 15 14 18 18 N 1.46494 * 109.45847 * 301.37474 * 16 15 14 19 19 C 1.34780 * 120.00002 * 275.02390 * 18 16 15 20 20 O 1.21284 * 119.99948 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99988 * 180.02562 * 19 18 16 22 22 C 1.50696 * 109.46712 * 179.97438 * 21 19 18 23 23 C 1.35456 * 126.77765 * 89.71068 * 22 21 19 24 24 C 1.41379 * 103.98548 * 179.90488 * 23 22 21 25 25 C 1.50698 * 126.80140 * 180.09115 * 24 23 22 26 26 C 1.53002 * 117.50107 * 344.04167 * 25 24 23 27 27 C 1.53006 * 117.50306 * 275.38101 * 25 24 23 28 28 N 1.30171 * 106.39989 * 0.35886 * 24 23 22 29 29 O 1.20923 * 111.60370 * 359.77031 * 28 24 23 30 30 H 1.09005 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47074 * 300.06355 * 1 2 3 32 32 H 1.09001 * 109.47073 * 60.06872 * 1 2 3 33 33 H 1.09004 * 109.59098 * 294.37462 * 4 2 1 34 34 H 1.09001 * 109.58445 * 54.79911 * 4 2 1 35 35 H 0.96994 * 119.99840 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.58241 * 173.39913 * 14 5 4 37 37 H 1.09004 * 109.58274 * 293.67574 * 14 5 4 38 38 H 1.09001 * 109.48782 * 185.39740 * 15 14 5 39 39 H 1.09001 * 109.50803 * 65.30301 * 15 14 5 40 40 H 0.96999 * 120.00418 * 95.02926 * 18 16 15 41 41 H 1.08993 * 109.46724 * 299.99297 * 21 19 18 42 42 H 1.08996 * 109.47375 * 60.00244 * 21 19 18 43 43 H 1.07998 * 128.00560 * 359.97438 * 23 22 21 44 44 H 1.09005 * 115.55347 * 129.70809 * 25 24 23 45 45 H 1.09002 * 117.49851 * 359.97438 * 26 25 24 46 46 H 1.09002 * 117.50086 * 145.01632 * 26 25 24 47 47 H 1.08996 * 117.49651 * 214.98144 * 27 25 24 48 48 H 1.09004 * 117.49367 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5046 -0.8294 1.1694 6 6 4.2936 -0.3799 2.1944 7 1 5.2988 -0.0403 1.9931 8 6 3.8012 -0.3605 3.4922 9 7 2.7376 -1.0707 3.8031 10 14 4.6481 0.6736 4.7971 11 1 4.0516 2.0334 4.8152 12 1 4.4689 0.0367 6.1266 13 1 6.0969 0.7726 4.4869 14 6 4.1053 -1.4267 -0.0311 15 6 3.5709 -0.6944 -1.2659 16 6 2.0408 -0.7228 -1.2486 17 1 1.6582 -0.2239 -2.1389 18 7 1.5787 -2.1128 -1.2312 19 6 1.4500 -2.7947 -2.3866 20 8 1.7165 -2.2574 -3.4407 21 6 0.9741 -4.2245 -2.3687 22 6 0.9173 -4.7526 -3.7790 23 6 1.9150 -5.3725 -4.4536 24 6 1.3462 -5.6618 -5.7151 25 6 2.0192 -6.3559 -6.8711 26 6 3.5447 -6.4680 -6.8367 27 6 2.8699 -5.4994 -7.8112 28 7 0.1278 -5.2047 -5.6825 29 8 -0.1285 -4.6963 -4.6156 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7638 -0.1585 2.1389 34 1 1.6052 -1.7219 1.2976 35 1 2.3933 -1.0569 4.7098 36 1 5.1896 -1.3246 0.0135 37 1 3.8396 -2.4824 -0.0860 38 1 3.9337 -1.1887 -2.1672 39 1 3.9157 0.3395 -1.2536 40 1 1.3652 -2.5425 -0.3881 41 1 1.6643 -4.8298 -1.7813 42 1 -0.0197 -4.2711 -1.9235 43 1 2.9135 -5.5954 -4.1074 44 1 1.4635 -7.1846 -7.3100 45 1 4.0616 -6.0393 -5.9781 46 1 3.9926 -7.3702 -7.2532 47 1 2.8741 -5.7648 -8.8684 48 1 2.9424 -4.4337 -7.5937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942127685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:29 Heat of formation + Delta-G solvation = 65.633752 kcal Electronic energy + Delta-G solvation = -29074.140343 eV Core-core repulsion = 25133.677275 eV Total energy + Delta-G solvation = -3940.463068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.97712 -39.96281 -37.79292 -37.75739 -34.29407 -33.75966 -33.02012 -32.23452 -31.85691 -29.82311 -28.31419 -25.94568 -25.21950 -24.79028 -23.11618 -22.41076 -22.13820 -21.19101 -20.82864 -19.72979 -18.64604 -17.87673 -17.39049 -16.87806 -16.69419 -16.06581 -15.42673 -15.17697 -14.93198 -14.74966 -14.18749 -14.02249 -13.93195 -13.60396 -13.42663 -13.17821 -13.08800 -12.72401 -12.35736 -12.20564 -12.04846 -11.85300 -11.66054 -11.49664 -11.27346 -11.25434 -11.07696 -10.99272 -10.76265 -10.66915 -10.41760 -10.19571 -10.01178 -9.96059 -9.86221 -9.78725 -9.49285 -9.33167 -8.71675 -8.52397 -6.75398 -5.87140 -3.28837 1.36311 2.08559 2.72019 2.91910 3.33284 3.40054 3.41048 3.41590 3.50192 3.89818 4.29709 4.43532 4.52400 4.63610 4.79141 4.88919 4.89533 5.06432 5.14148 5.23640 5.25621 5.30704 5.37870 5.39377 5.51451 5.54945 5.57679 5.62964 5.76200 5.79632 5.80363 5.92511 6.02921 6.10702 6.15343 6.28688 6.41228 6.48559 6.49895 6.60544 6.72643 6.86493 6.94478 7.22388 7.52502 7.71755 7.75140 8.20114 8.36871 8.37693 9.13378 9.76443 10.32384 11.21251 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.002493 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.125862 B =11229.357767 C =11726.681009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 H 0.078 0.922 4 C 0.178 3.822 5 N -0.592 5.592 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.149 3.851 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.073 0.927 18 N -0.707 5.707 19 C 0.514 3.486 20 O -0.541 6.541 21 C -0.066 4.066 22 C 0.000 4.000 23 C -0.215 4.215 24 C 0.047 3.953 25 C -0.086 4.086 26 C -0.163 4.163 27 C -0.164 4.164 28 N -0.361 5.361 29 O 0.105 5.895 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.016 0.984 35 H 0.254 0.746 36 H 0.052 0.948 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.405 0.595 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.169 0.831 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -9.102 -14.862 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.096 0.904 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.548 5.548 10 Si 0.732 3.268 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.022 3.978 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.091 0.909 18 N -0.359 5.359 19 C 0.299 3.701 20 O -0.419 6.419 21 C -0.107 4.107 22 C -0.065 4.065 23 C -0.237 4.237 24 C -0.111 4.111 25 C -0.105 4.105 26 C -0.200 4.200 27 C -0.202 4.202 28 N -0.064 5.064 29 O 0.038 5.962 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.241 0.759 41 H 0.146 0.854 42 H 0.137 0.863 43 H 0.187 0.813 44 H 0.139 0.861 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.169 -8.701 -16.306 18.947 hybrid contribution 1.023 0.202 1.588 1.900 sum -3.146 -8.499 -14.718 17.284 Atomic orbital electron populations 1.21722 0.95800 1.01247 1.00923 1.22138 0.94790 1.00791 0.97135 0.90382 1.20804 0.83159 0.96563 0.94308 1.44064 1.01637 1.69544 1.16192 1.19197 0.97750 1.35418 0.85783 0.91671 1.25012 0.98555 0.99031 0.96959 1.70008 1.25669 1.40179 1.18901 0.86294 0.79209 0.80193 0.81104 1.21431 1.21780 1.20464 1.20847 0.96524 0.94019 0.86381 1.22381 0.95083 1.01772 0.99339 1.20906 0.94292 0.80490 0.98616 0.90899 1.46111 1.66782 1.14432 1.08584 1.20113 0.78218 0.87386 0.84427 1.90726 1.50459 1.69958 1.30717 1.20180 1.06052 0.95141 0.89321 1.23565 0.87851 1.00201 0.94836 1.22251 1.01548 1.06140 0.93750 1.22549 0.91128 1.01442 0.96001 1.20080 0.92950 1.01449 0.96038 1.23043 0.92724 1.01885 1.02362 1.23042 1.02483 0.98081 0.96566 1.73778 1.17953 1.12954 1.01672 1.84813 1.36254 1.58202 1.16961 0.93137 0.92583 0.93692 0.89082 0.96601 0.93613 0.92979 0.96556 0.92622 0.91434 0.75852 0.85387 0.86319 0.81302 0.86083 0.88105 0.87834 0.87972 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.05 37.16 0.34 -1.68 16 2 C -0.13 -2.18 2.67 -90.50 -0.24 -2.42 16 3 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.18 3.73 4.30 -3.71 -0.02 3.72 16 5 N -0.59 -13.61 2.99 -172.32 -0.52 -14.12 16 6 C -0.25 -6.54 9.59 -15.06 -0.14 -6.69 16 7 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 8 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -24.58 11.19 55.49 0.62 -23.95 16 10 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.15 2.92 6.25 -3.71 -0.02 2.89 16 15 C -0.15 -2.51 5.77 -26.62 -0.15 -2.66 16 16 C 0.16 2.60 2.21 -67.89 -0.15 2.45 16 17 H 0.07 1.22 7.58 -51.93 -0.39 0.83 16 18 N -0.71 -9.98 3.60 -53.77 -0.19 -10.17 16 19 C 0.51 7.15 7.79 -10.98 -0.09 7.07 16 20 O -0.54 -9.64 15.70 5.55 0.09 -9.56 16 21 C -0.07 -0.66 6.27 -29.04 -0.18 -0.84 16 22 C 0.00 -0.01 5.98 -35.30 -0.21 -0.22 16 23 C -0.22 -2.54 10.40 -39.38 -0.41 -2.95 16 24 C 0.05 0.59 6.95 -82.10 -0.57 0.02 16 25 C -0.09 -0.84 6.33 -91.77 -0.58 -1.42 16 26 C -0.16 -1.25 10.05 -26.69 -0.27 -1.51 16 27 C -0.16 -1.42 10.24 -26.69 -0.27 -1.69 16 28 N -0.36 -5.27 12.07 33.42 0.40 -4.86 16 29 O 0.10 1.49 11.20 17.15 0.19 1.68 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 34 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 35 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 37 H 0.02 0.32 7.74 -51.93 -0.40 -0.08 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.40 5.44 6.73 -40.82 -0.27 5.17 16 41 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.17 1.62 7.62 -52.49 -0.40 1.22 16 44 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 0.79 7.34 -51.93 -0.38 0.41 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -31.24 387.31 -9.17 -40.41 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.51 Total: 4.83 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.06 Total: -5.94 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.31 Total: -53.11 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.28 Total: -7.88 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.24 -9.17 -40.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942127685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.039 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds