Wall clock time and date at job start Tue Mar 31 2020 17:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00617 * 2 1 4 4 C 1.50700 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.38353 * 120.34423 * 90.00458 * 4 3 2 6 6 N 1.31928 * 121.07635 * 180.02562 * 5 4 3 7 7 C 1.31689 * 121.88291 * 359.97438 * 6 5 4 8 8 C 1.39521 * 120.56657 * 0.02562 * 7 6 5 9 9 C 1.47835 * 120.56106 * 180.02562 * 8 7 6 10 10 O 1.21556 * 120.00134 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99981 * 359.72352 * 9 8 7 12 12 C 1.46498 * 119.99987 * 180.27590 * 11 9 8 13 13 H 1.08999 * 109.46341 * 34.97542 * 12 11 9 14 14 C 1.53041 * 109.46323 * 275.00157 * 12 11 9 15 15 C 1.53188 * 109.31779 * 178.61583 * 14 12 11 16 16 N 1.46933 * 108.77388 * 54.63353 * 15 14 12 17 17 C 1.36939 * 120.62802 * 126.41785 * 16 15 14 18 18 H 1.07996 * 119.99268 * 207.67403 * 17 16 15 19 19 C 1.38807 * 120.00379 * 27.67204 * 17 16 15 20 20 N 1.31622 * 119.99782 * 17.35717 * 19 17 16 21 21 Si 1.86796 * 120.00204 * 197.35863 * 19 17 16 22 22 H 1.48499 * 109.47426 * 89.99776 * 21 19 17 23 23 H 1.48507 * 109.47154 * 210.00110 * 21 19 17 24 24 H 1.48501 * 109.46933 * 329.99749 * 21 19 17 25 25 C 1.46923 * 118.73869 * 306.39000 * 16 15 14 26 26 C 1.53036 * 109.46057 * 154.93295 * 12 11 9 27 27 H 1.09003 * 109.50078 * 61.43193 * 26 12 11 28 28 C 1.53002 * 109.50008 * 301.33832 * 26 12 11 29 29 C 1.38356 * 120.35193 * 270.28293 * 4 3 2 30 30 H 1.09000 * 109.46631 * 300.00007 * 1 2 3 31 31 H 1.08996 * 109.46815 * 59.99514 * 1 2 3 32 32 H 1.08993 * 109.47463 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46710 * 59.99948 * 3 2 1 34 34 H 1.09003 * 109.47069 * 300.00267 * 3 2 1 35 35 H 1.08005 * 119.46429 * 359.97438 * 5 4 3 36 36 H 1.08005 * 119.72103 * 180.02562 * 7 6 5 37 37 H 0.97001 * 120.00094 * 0.27477 * 11 9 8 38 38 H 1.09000 * 109.49635 * 298.56828 * 14 12 11 39 39 H 1.09001 * 109.49469 * 58.62625 * 14 12 11 40 40 H 1.08994 * 109.59013 * 174.42358 * 15 14 12 41 41 H 1.09004 * 109.58698 * 294.84650 * 15 14 12 42 42 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58638 * 173.39343 * 25 16 15 44 44 H 1.08996 * 109.58953 * 293.68616 * 25 16 15 45 45 H 1.08999 * 109.46997 * 59.99448 * 28 26 12 46 46 H 1.08994 * 109.47612 * 180.02562 * 28 26 12 47 47 H 1.09004 * 109.46953 * 299.99965 * 28 26 12 48 48 H 1.07999 * 120.85417 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2099 1.1310 -1.1931 6 7 5.5249 1.0262 -1.2094 7 6 6.2320 0.9703 -0.0998 8 6 5.6040 1.0201 1.1450 9 6 6.3980 0.9578 2.3905 10 8 5.8403 1.0025 3.4697 11 7 7.7397 0.8463 2.3295 12 6 8.5260 0.7785 3.5637 13 1 7.9650 0.2325 4.3222 14 6 8.8132 2.1961 4.0639 15 6 9.6057 2.1208 5.3727 16 7 10.8069 1.3039 5.1519 17 6 12.0482 1.7893 5.4662 18 1 12.9175 1.4351 4.9322 19 6 12.1891 2.7364 6.4711 20 7 11.2201 2.9203 7.3427 21 14 13.7538 3.7501 6.5864 22 1 13.6015 4.9890 5.7819 23 1 14.0077 4.1091 8.0049 24 1 14.8963 2.9581 6.0642 25 6 10.6508 -0.0438 4.5880 26 6 9.8465 0.0558 3.2879 27 1 10.4193 0.6144 2.5477 28 6 9.5582 -1.3498 2.7569 29 6 4.2086 1.1254 1.1948 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6688 1.1734 -2.1268 36 1 7.3073 0.8850 -0.1539 37 1 8.1848 0.8110 1.4683 38 1 9.3957 2.7346 3.3164 39 1 7.8723 2.7183 4.2372 40 1 9.8980 3.1245 5.6812 41 1 8.9898 1.6632 6.1470 42 1 11.3184 3.5824 8.0447 43 1 11.6326 -0.4683 4.3786 44 1 10.1223 -0.6786 5.2992 45 1 8.9835 -1.2785 1.8335 46 1 10.4988 -1.8644 2.5610 47 1 8.9866 -1.9082 3.4983 48 1 3.6893 1.1624 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942142362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:13 Heat of formation + Delta-G solvation = -27.259045 kcal Electronic energy + Delta-G solvation = -28510.056095 eV Core-core repulsion = 24565.564893 eV Total energy + Delta-G solvation = -3944.491202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93339 -39.48421 -38.15613 -37.57349 -34.65069 -33.39114 -32.92387 -32.07071 -31.15920 -29.76088 -27.89090 -25.98202 -25.95807 -25.55090 -24.12282 -22.98983 -22.05819 -21.01109 -20.33098 -19.40013 -17.92611 -17.27522 -16.94418 -16.85506 -16.58461 -15.92358 -15.74976 -15.34752 -14.99068 -14.78590 -14.24075 -13.91622 -13.84527 -13.54335 -13.45421 -13.41872 -13.14525 -12.86102 -12.80930 -12.67564 -12.29413 -12.10141 -11.89178 -11.49977 -11.31932 -11.07727 -10.82779 -10.67837 -10.38801 -10.28704 -10.23061 -10.19657 -10.14151 -10.01459 -9.79903 -9.69818 -9.48728 -9.44790 -8.74294 -8.43228 -6.69889 -5.78956 -3.21820 0.35464 0.80695 2.74321 3.16314 3.35533 3.38191 3.44779 3.45985 3.73509 3.97645 4.33500 4.41084 4.48729 4.53597 4.58194 4.74480 4.84732 4.92397 4.98079 5.06840 5.18327 5.24735 5.25867 5.29643 5.39635 5.49140 5.59208 5.71682 5.78488 5.88881 5.96650 6.09180 6.17374 6.23770 6.25803 6.32686 6.43638 6.58842 6.63779 6.65988 6.76668 6.88768 6.94999 7.36141 7.49055 7.59606 7.67783 7.79381 8.26320 8.44156 9.20235 9.83597 10.39935 11.29512 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.002259 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.345231 B =12391.878603 C =12657.993762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.153 4.153 5 C 0.139 3.861 6 N -0.487 5.487 7 C 0.139 3.861 8 C -0.181 4.181 9 C 0.559 3.441 10 O -0.532 6.532 11 N -0.714 5.714 12 C 0.157 3.843 13 H 0.084 0.916 14 C -0.148 4.148 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.155 3.845 26 C -0.115 4.115 27 H 0.072 0.928 28 C -0.143 4.143 29 C 0.003 3.997 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.394 0.606 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.254 0.746 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 -4.470 -17.838 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.156 4.156 5 C -0.018 4.018 6 N -0.194 5.194 7 C -0.019 4.019 8 C -0.186 4.186 9 C 0.344 3.656 10 O -0.409 6.409 11 N -0.364 5.364 12 C 0.054 3.946 13 H 0.102 0.898 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.028 3.972 26 C -0.136 4.136 27 H 0.090 0.910 28 C -0.201 4.201 29 C -0.024 4.024 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.229 0.771 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.639 -4.532 -17.676 25.380 hybrid contribution 0.306 0.857 0.468 1.023 sum -17.333 -3.675 -17.208 24.700 Atomic orbital electron populations 1.22784 0.80540 1.03106 1.00182 1.87979 1.19977 1.27088 1.95456 1.21232 0.88556 0.85461 1.01665 1.20564 0.95890 1.04868 0.94231 1.22880 0.89938 0.91471 0.97525 1.67756 1.07862 1.12965 1.30866 1.23060 1.00368 0.91643 0.86836 1.21149 0.95157 1.07076 0.95258 1.17960 0.82442 0.77118 0.88095 1.90800 1.70925 1.49741 1.29480 1.46230 1.05950 1.73553 1.10663 1.21128 0.90833 0.97830 0.84783 0.89779 1.22587 1.00034 0.94793 1.01377 1.20769 0.86009 0.98268 0.90264 1.44112 1.03543 1.10394 1.73418 1.19182 0.85268 1.20951 1.12938 0.91578 1.25056 0.97600 1.01790 0.95230 1.70041 1.33258 1.35575 1.15630 0.86285 0.83017 0.80608 0.76812 1.21472 1.21788 1.20436 1.20890 0.97118 0.88379 0.90856 1.21983 0.95583 0.95092 1.00925 0.90959 1.21782 1.01105 0.96883 1.00296 1.21657 0.92574 0.89195 0.98936 0.93775 0.93859 0.89365 0.91754 0.91718 0.82238 0.82195 0.77149 0.92569 0.92757 0.89163 0.96105 0.93579 0.92332 0.96140 0.93499 0.92631 0.92840 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.45 10.69 -35.23 -0.38 -3.82 16 3 C 0.11 0.78 6.08 36.01 0.22 1.00 16 4 C -0.15 -1.44 5.52 -104.54 -0.58 -2.02 16 5 C 0.14 1.28 10.85 -17.47 -0.19 1.09 16 6 N -0.49 -5.25 10.35 -12.91 -0.13 -5.39 16 7 C 0.14 1.47 10.71 -17.14 -0.18 1.28 16 8 C -0.18 -2.20 5.89 -104.82 -0.62 -2.81 16 9 C 0.56 8.30 7.75 -12.33 -0.10 8.21 16 10 O -0.53 -9.94 16.08 5.32 0.09 -9.85 16 11 N -0.71 -9.79 4.32 -54.71 -0.24 -10.03 16 12 C 0.16 2.67 1.88 -67.89 -0.13 2.54 16 13 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 14 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 15 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 16 N -0.59 -14.58 3.00 -172.32 -0.52 -15.10 16 17 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 21 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.15 3.13 5.80 -3.71 -0.02 3.11 16 26 C -0.11 -1.85 2.46 -90.50 -0.22 -2.07 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 C -0.14 -1.86 9.03 37.16 0.34 -1.53 16 29 C 0.00 0.03 9.39 -38.87 -0.37 -0.33 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.16 1.31 6.42 -52.48 -0.34 0.97 16 37 H 0.39 4.25 6.38 -40.82 -0.26 3.99 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.15 1.68 7.74 -52.49 -0.41 1.27 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -33.01 389.65 -8.39 -41.40 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.54 Total: 2.11 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.13 Total: 3.81 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.27 Total: -56.09 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.29 Total: -13.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.01 -8.39 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942142362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.142 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds