Wall clock time and date at job start Tue Mar 31 2020 17:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00617 * 2 1 4 4 C 1.50700 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.38353 * 120.34423 * 90.00458 * 4 3 2 6 6 N 1.31928 * 121.07635 * 180.02562 * 5 4 3 7 7 C 1.31689 * 121.88291 * 359.97438 * 6 5 4 8 8 C 1.39521 * 120.56657 * 0.02562 * 7 6 5 9 9 C 1.47835 * 120.56106 * 180.02562 * 8 7 6 10 10 O 1.21556 * 120.00134 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99981 * 359.72352 * 9 8 7 12 12 C 1.46498 * 119.99987 * 180.27590 * 11 9 8 13 13 H 1.08999 * 109.46341 * 34.97542 * 12 11 9 14 14 C 1.53041 * 109.46323 * 275.00157 * 12 11 9 15 15 C 1.53188 * 109.31779 * 178.61583 * 14 12 11 16 16 N 1.46933 * 108.77388 * 54.63353 * 15 14 12 17 17 C 1.36939 * 120.62802 * 126.41785 * 16 15 14 18 18 H 1.07996 * 119.99268 * 207.67403 * 17 16 15 19 19 C 1.38807 * 120.00379 * 27.67204 * 17 16 15 20 20 N 1.31622 * 119.99782 * 17.35717 * 19 17 16 21 21 Si 1.86796 * 120.00204 * 197.35863 * 19 17 16 22 22 H 1.48499 * 109.47426 * 89.99776 * 21 19 17 23 23 H 1.48507 * 109.47154 * 210.00110 * 21 19 17 24 24 H 1.48501 * 109.46933 * 329.99749 * 21 19 17 25 25 C 1.46923 * 118.73869 * 306.39000 * 16 15 14 26 26 C 1.53036 * 109.46057 * 154.93295 * 12 11 9 27 27 H 1.09003 * 109.50078 * 61.43193 * 26 12 11 28 28 C 1.53002 * 109.50008 * 301.33832 * 26 12 11 29 29 C 1.38356 * 120.35193 * 270.28293 * 4 3 2 30 30 H 1.09000 * 109.46631 * 300.00007 * 1 2 3 31 31 H 1.08996 * 109.46815 * 59.99514 * 1 2 3 32 32 H 1.08993 * 109.47463 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46710 * 59.99948 * 3 2 1 34 34 H 1.09003 * 109.47069 * 300.00267 * 3 2 1 35 35 H 1.08005 * 119.46429 * 359.97438 * 5 4 3 36 36 H 1.08005 * 119.72103 * 180.02562 * 7 6 5 37 37 H 0.97001 * 120.00094 * 0.27477 * 11 9 8 38 38 H 1.09000 * 109.49635 * 298.56828 * 14 12 11 39 39 H 1.09001 * 109.49469 * 58.62625 * 14 12 11 40 40 H 1.08994 * 109.59013 * 174.42358 * 15 14 12 41 41 H 1.09004 * 109.58698 * 294.84650 * 15 14 12 42 42 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58638 * 173.39343 * 25 16 15 44 44 H 1.08996 * 109.58953 * 293.68616 * 25 16 15 45 45 H 1.08999 * 109.46997 * 59.99448 * 28 26 12 46 46 H 1.08994 * 109.47612 * 180.02562 * 28 26 12 47 47 H 1.09004 * 109.46953 * 299.99965 * 28 26 12 48 48 H 1.07999 * 120.85417 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2099 1.1310 -1.1931 6 7 5.5249 1.0262 -1.2094 7 6 6.2320 0.9703 -0.0998 8 6 5.6040 1.0201 1.1450 9 6 6.3980 0.9578 2.3905 10 8 5.8403 1.0025 3.4697 11 7 7.7397 0.8463 2.3295 12 6 8.5260 0.7785 3.5637 13 1 7.9650 0.2325 4.3222 14 6 8.8132 2.1961 4.0639 15 6 9.6057 2.1208 5.3727 16 7 10.8069 1.3039 5.1519 17 6 12.0482 1.7893 5.4662 18 1 12.9175 1.4351 4.9322 19 6 12.1891 2.7364 6.4711 20 7 11.2201 2.9203 7.3427 21 14 13.7538 3.7501 6.5864 22 1 13.6015 4.9890 5.7819 23 1 14.0077 4.1091 8.0049 24 1 14.8963 2.9581 6.0642 25 6 10.6508 -0.0438 4.5880 26 6 9.8465 0.0558 3.2879 27 1 10.4193 0.6144 2.5477 28 6 9.5582 -1.3498 2.7569 29 6 4.2086 1.1254 1.1948 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6688 1.1734 -2.1268 36 1 7.3073 0.8850 -0.1539 37 1 8.1848 0.8110 1.4683 38 1 9.3957 2.7346 3.3164 39 1 7.8723 2.7183 4.2372 40 1 9.8980 3.1245 5.6812 41 1 8.9898 1.6632 6.1470 42 1 11.3184 3.5824 8.0447 43 1 11.6326 -0.4683 4.3786 44 1 10.1223 -0.6786 5.2992 45 1 8.9835 -1.2785 1.8335 46 1 10.4988 -1.8644 2.5610 47 1 8.9866 -1.9082 3.4983 48 1 3.6893 1.1624 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942142362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:12 Heat of formation + Delta-G solvation = -49.402020 kcal Electronic energy + Delta-G solvation = -28511.016286 eV Core-core repulsion = 24565.564893 eV Total energy + Delta-G solvation = -3945.451393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86440 -40.64762 -39.14326 -38.66764 -36.27282 -34.46551 -34.03260 -33.15525 -32.90302 -31.40036 -28.44672 -27.42045 -27.17712 -26.50271 -25.41113 -23.87150 -23.49905 -22.65643 -21.55088 -20.86372 -19.02511 -18.58733 -18.12723 -17.66416 -17.38900 -17.01510 -16.72310 -16.44398 -16.17102 -16.09204 -15.61607 -15.56280 -15.17762 -14.82600 -14.68866 -14.46072 -14.24201 -14.22949 -13.95372 -13.58974 -13.34939 -13.07237 -13.02230 -12.90848 -12.72587 -12.60239 -12.37461 -12.32282 -12.08232 -12.02759 -11.68923 -11.59151 -11.44470 -11.15344 -10.99803 -10.73048 -10.57605 -10.50804 -10.30369 -10.01098 -8.72302 -7.87651 -5.33747 -0.47538 0.00593 1.47607 1.49019 1.57957 1.73227 2.00547 2.51285 2.59214 3.04495 3.24465 3.27918 3.58069 3.64758 3.70067 3.74221 3.75495 3.83894 4.01008 4.02862 4.15515 4.29955 4.37486 4.48794 4.53619 4.56893 4.59933 4.62389 4.71719 4.72032 4.85301 4.88029 4.90020 4.91279 5.01337 5.05505 5.10665 5.14277 5.29151 5.38396 5.42468 5.48860 5.51761 5.63700 5.69425 6.16423 6.37708 6.46277 6.72536 7.12523 7.12708 7.83581 8.36279 9.19288 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.002259 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.345231 B =12391.878603 C =12657.993762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.152 4.152 5 C 0.145 3.855 6 N -0.500 5.500 7 C 0.146 3.854 8 C -0.197 4.197 9 C 0.561 3.439 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.170 3.830 13 H 0.058 0.942 14 C -0.132 4.132 15 C 0.182 3.818 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.074 0.926 19 C -0.055 4.055 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.264 1.264 25 C 0.149 3.851 26 C -0.100 4.100 27 H 0.084 0.916 28 C -0.135 4.135 29 C -0.009 4.009 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.192 0.808 36 H 0.184 0.816 37 H 0.413 0.587 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.056 0.944 41 H -0.011 1.011 42 H 0.249 0.751 43 H 0.066 0.934 44 H 0.009 0.991 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 -5.003 -21.523 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.011 4.011 6 N -0.207 5.207 7 C -0.012 4.012 8 C -0.202 4.202 9 C 0.348 3.652 10 O -0.459 6.459 11 N -0.350 5.350 12 C 0.065 3.935 13 H 0.077 0.923 14 C -0.172 4.172 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.251 4.251 20 N -0.584 5.584 21 Si 0.797 3.203 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.189 1.189 25 C 0.023 3.977 26 C -0.120 4.120 27 H 0.102 0.898 28 C -0.193 4.193 29 C -0.036 4.036 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.209 0.791 36 H 0.201 0.799 37 H 0.251 0.749 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.007 0.993 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.027 0.973 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.761 -5.096 -21.430 28.296 hybrid contribution 0.240 0.978 1.591 1.883 sum -17.521 -4.118 -19.840 26.787 Atomic orbital electron populations 1.22951 0.78979 1.03864 1.01296 1.87925 1.21773 1.27984 1.95711 1.21346 0.87085 0.85297 1.03293 1.20782 0.97171 1.03936 0.93474 1.23434 0.89643 0.89434 0.98628 1.67859 1.08664 1.13583 1.30634 1.23347 1.01442 0.90465 0.85969 1.20903 0.95190 1.09674 0.94438 1.18378 0.82552 0.75774 0.88493 1.90782 1.71775 1.51838 1.31473 1.45894 1.05582 1.73170 1.10328 1.20719 0.91535 0.95583 0.85645 0.92345 1.22330 0.98851 0.96908 0.99141 1.20475 0.86136 0.96085 0.91748 1.44353 1.02883 1.12224 1.73712 1.19566 0.86363 1.20630 1.12358 0.90807 1.25867 1.00703 1.03253 0.95228 1.70214 1.35421 1.36341 1.16467 0.85234 0.79849 0.79005 0.76168 1.21259 1.22547 1.18890 1.21086 0.98247 0.86025 0.92317 1.21777 0.94103 0.97370 0.98796 0.89802 1.21732 1.02306 0.94344 1.00935 1.21749 0.92614 0.89646 0.99562 0.93296 0.92085 0.88901 0.91350 0.88893 0.79106 0.79926 0.74903 0.91774 0.93495 0.92518 0.99328 0.94204 0.91525 0.97275 0.90986 0.90973 0.93628 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.66 10.69 -148.98 -1.59 -8.25 16 3 C 0.11 1.32 6.08 71.24 0.43 1.75 16 4 C -0.15 -2.56 5.52 -19.81 -0.11 -2.66 16 5 C 0.15 2.23 10.85 84.71 0.92 3.15 16 6 N -0.50 -9.31 10.35 -194.75 -2.01 -11.32 16 7 C 0.15 2.71 10.71 85.02 0.91 3.62 16 8 C -0.20 -4.56 5.89 -19.99 -0.12 -4.68 16 9 C 0.56 16.51 7.75 86.78 0.67 17.18 16 10 O -0.58 -22.31 16.08 -3.89 -0.06 -22.38 16 11 N -0.70 -18.21 4.32 -445.29 -1.92 -20.13 16 12 C 0.17 5.72 1.88 45.02 0.08 5.80 16 13 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 14 C -0.13 -5.30 5.65 30.67 0.17 -5.13 16 15 C 0.18 9.22 5.31 86.36 0.46 9.68 16 16 N -0.61 -30.57 3.00 -699.10 -2.09 -32.67 16 17 C -0.26 -14.12 9.58 84.03 0.81 -13.31 16 18 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 19 C -0.06 -3.12 4.91 84.86 0.42 -2.70 16 20 N -0.94 -56.80 11.19 21.65 0.24 -56.55 16 21 Si 0.97 45.00 29.59 68.60 2.03 47.03 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.15 6.00 5.80 86.37 0.50 6.50 16 26 C -0.10 -3.05 2.46 -10.71 -0.03 -3.08 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 C -0.14 -3.15 9.03 71.98 0.65 -2.50 16 29 C -0.01 -0.20 9.39 22.73 0.21 0.01 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.78 8.09 -2.38 -0.02 0.76 16 34 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 35 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.18 2.34 6.42 -2.91 -0.02 2.32 16 37 H 0.41 7.67 6.38 -92.71 -0.59 7.07 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 41 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.07 1.34 7.36 -2.39 -0.02 1.32 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.14 3.25 7.74 -2.91 -0.02 3.23 16 Total: -1.00 -74.83 389.65 2.19 -72.64 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.37 Total: 16.53 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 7.23 Total: 15.09 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -5.79 Total: -120.67 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.65 Total: -30.63 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.83 2.19 -72.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942142362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.237 kcal (2) G-P(sol) polarization free energy of solvation -74.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds