Wall clock time and date at job start Tue Mar 31 2020 17:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00168 * 2 1 4 4 C 1.50704 * 109.47279 * 180.02562 * 3 2 1 5 5 C 1.38353 * 120.35085 * 89.99547 * 4 3 2 6 6 N 1.31923 * 121.07844 * 179.72134 * 5 4 3 7 7 C 1.31694 * 121.88137 * 0.28394 * 6 5 4 8 8 C 1.39520 * 120.56548 * 0.02562 * 7 6 5 9 9 C 1.47838 * 120.55902 * 179.97438 * 8 7 6 10 10 O 1.21547 * 120.00371 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99740 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99868 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.46128 * 35.02877 * 12 11 9 14 14 C 1.53035 * 109.46272 * 275.06736 * 12 11 9 15 15 C 1.53193 * 109.31158 * 301.34387 * 14 12 11 16 16 N 1.46924 * 108.77363 * 305.36377 * 15 14 12 17 17 C 1.36937 * 120.62724 * 233.62819 * 16 15 14 18 18 H 1.08003 * 120.00198 * 27.66480 * 17 16 15 19 19 C 1.38811 * 119.99695 * 207.66268 * 17 16 15 20 20 N 1.31623 * 120.00425 * 17.37586 * 19 17 16 21 21 Si 1.86806 * 119.99960 * 197.37083 * 19 17 16 22 22 H 1.48493 * 109.46967 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46807 * 120.00039 * 21 19 17 24 24 H 1.48490 * 109.47477 * 240.00050 * 21 19 17 25 25 C 1.46920 * 118.73763 * 53.61295 * 16 15 14 26 26 C 1.53040 * 109.45970 * 154.99602 * 12 11 9 27 27 H 1.09007 * 109.49615 * 178.60963 * 26 12 11 28 28 C 1.53003 * 109.50044 * 298.67296 * 26 12 11 29 29 C 1.38361 * 120.34493 * 270.29602 * 4 3 2 30 30 H 1.09000 * 109.47468 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46854 * 300.00076 * 1 2 3 32 32 H 1.08995 * 109.47562 * 59.99719 * 1 2 3 33 33 H 1.08996 * 109.47165 * 59.99854 * 3 2 1 34 34 H 1.09004 * 109.47286 * 299.99949 * 3 2 1 35 35 H 1.08004 * 119.45614 * 0.02562 * 5 4 3 36 36 H 1.07996 * 119.71463 * 179.97438 * 7 6 5 37 37 H 0.96999 * 119.99989 * 359.97438 * 11 9 8 38 38 H 1.09006 * 109.49492 * 61.29657 * 14 12 11 39 39 H 1.08997 * 109.50028 * 181.38949 * 14 12 11 40 40 H 1.09000 * 109.58249 * 185.57443 * 15 14 12 41 41 H 1.09000 * 109.58448 * 65.15594 * 15 14 12 42 42 H 0.96998 * 120.00269 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.58280 * 186.59889 * 25 16 15 44 44 H 1.08996 * 109.70679 * 66.24515 * 25 16 15 45 45 H 1.09003 * 109.46854 * 60.00099 * 28 26 12 46 46 H 1.08995 * 109.47129 * 179.97438 * 28 26 12 47 47 H 1.08999 * 109.47037 * 300.00011 * 28 26 12 48 48 H 1.07997 * 120.85864 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2090 1.1313 -1.1948 6 7 5.5244 1.0327 -1.2122 7 6 6.2324 0.9767 -0.1031 8 6 5.6048 1.0200 1.1422 9 6 6.3996 0.9566 2.3871 10 8 5.8424 0.9956 3.4666 11 7 7.7422 0.8565 2.3250 12 6 8.5300 0.7942 3.5586 13 1 7.9745 0.2420 4.3167 14 6 8.8042 2.2136 4.0607 15 6 9.5547 2.9974 2.9795 16 7 10.7605 2.2471 2.6027 17 6 11.9923 2.8444 2.6352 18 1 12.1796 3.6591 3.3190 19 6 13.0004 2.4026 1.7894 20 7 12.7030 1.6676 0.7387 21 14 14.7791 2.8512 2.1420 22 1 14.8462 3.6782 3.3735 23 1 15.5733 1.6113 2.3351 24 1 15.3319 3.6200 0.9982 25 6 10.6194 0.8439 2.1907 26 6 9.8570 0.0843 3.2808 27 1 10.4541 0.0594 4.1925 28 6 9.5826 -1.3458 2.8110 29 6 4.2094 1.1249 1.1931 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.6671 1.1747 -2.1281 36 1 7.3079 0.8957 -0.1581 37 1 8.1869 0.8257 1.4635 38 1 7.8592 2.7106 4.2806 39 1 9.4111 2.1687 4.9650 40 1 9.8392 3.9752 3.3681 41 1 8.9137 3.1212 2.1066 42 1 13.4073 1.3592 0.1475 43 1 11.6066 0.4009 2.0589 44 1 10.0666 0.7900 1.2530 45 1 8.9865 -1.3204 1.8988 46 1 10.5280 -1.8508 2.6129 47 1 9.0379 -1.8846 3.5862 48 1 3.6908 1.1613 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942142364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:15 Heat of formation + Delta-G solvation = -44.787190 kcal Electronic energy + Delta-G solvation = -29125.056769 eV Core-core repulsion = 25179.805489 eV Total energy + Delta-G solvation = -3945.251279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90069 -40.74957 -39.09054 -38.64921 -35.98118 -34.23637 -33.95164 -33.53156 -32.86024 -31.14827 -28.42252 -27.53422 -27.18332 -26.49193 -25.54015 -23.85225 -23.69442 -22.60380 -21.67826 -20.17350 -19.12616 -18.66685 -17.99240 -17.63402 -17.37138 -16.88240 -16.59929 -16.46937 -16.22317 -16.07046 -15.66991 -15.44145 -15.18112 -14.87401 -14.73453 -14.46953 -14.24274 -14.22796 -13.97358 -13.59017 -13.33210 -13.07948 -12.94224 -12.91072 -12.77084 -12.56693 -12.48953 -12.35381 -12.15263 -11.79489 -11.70658 -11.50652 -11.29993 -11.11991 -10.99780 -10.71320 -10.54222 -10.49301 -10.30254 -9.99051 -8.65629 -7.86292 -5.30007 -0.47621 0.01009 1.46536 1.49905 1.59026 1.74481 2.08727 2.52174 2.59532 3.04777 3.24287 3.28442 3.60085 3.67746 3.70282 3.74050 3.81532 3.85706 4.02298 4.05128 4.17928 4.29867 4.34557 4.49692 4.54622 4.58473 4.58763 4.63778 4.66899 4.73995 4.84081 4.89883 4.91727 4.96004 5.02269 5.05167 5.09552 5.13913 5.29792 5.35278 5.42800 5.50644 5.56983 5.66928 5.77422 6.18599 6.40897 6.45514 6.73285 7.09255 7.17095 7.86891 8.38127 9.19501 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002651 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.681417 B =10560.125820 C =11029.829860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.109 3.891 4 C -0.150 4.150 5 C 0.142 3.858 6 N -0.504 5.504 7 C 0.139 3.861 8 C -0.196 4.196 9 C 0.565 3.435 10 O -0.571 6.571 11 N -0.700 5.700 12 C 0.167 3.833 13 H 0.082 0.918 14 C -0.134 4.134 15 C 0.148 3.852 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.062 0.938 19 C -0.045 4.045 20 N -0.928 5.928 21 Si 0.961 3.039 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.294 1.294 25 C 0.186 3.814 26 C -0.115 4.115 27 H 0.075 0.925 28 C -0.133 4.133 29 C -0.003 4.003 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.192 0.808 36 H 0.162 0.838 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.014 0.986 42 H 0.250 0.750 43 H 0.058 0.942 44 H 0.007 0.993 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 -3.440 -1.733 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.032 3.968 4 C -0.152 4.152 5 C -0.015 4.015 6 N -0.212 5.212 7 C -0.019 4.019 8 C -0.201 4.201 9 C 0.352 3.648 10 O -0.452 6.452 11 N -0.351 5.351 12 C 0.062 3.938 13 H 0.100 0.900 14 C -0.174 4.174 15 C 0.023 3.977 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.080 0.920 19 C -0.241 4.241 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.221 1.221 25 C 0.060 3.940 26 C -0.136 4.136 27 H 0.093 0.907 28 C -0.191 4.191 29 C -0.030 4.030 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.209 0.791 36 H 0.179 0.821 37 H 0.242 0.758 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.996 -3.644 -1.875 22.375 hybrid contribution 0.995 0.534 0.437 1.211 sum -21.001 -3.110 -1.437 21.279 Atomic orbital electron populations 1.22954 0.78944 1.03852 1.01335 1.87931 1.21804 1.27949 1.95720 1.21331 0.86697 0.85314 1.03442 1.20824 0.97360 1.03655 0.93376 1.23463 0.89357 0.89678 0.98965 1.67820 1.09000 1.13596 1.30809 1.23146 1.00759 0.91136 0.86849 1.20939 0.95575 1.09329 0.94299 1.18187 0.82257 0.75885 0.88427 1.90720 1.71603 1.52254 1.30601 1.46049 1.05668 1.72656 1.10737 1.20823 0.91037 0.96062 0.85844 0.90000 1.22250 0.99708 0.96194 0.99273 1.20908 0.87764 0.94279 0.94771 1.44285 1.02222 1.07939 1.78568 1.19463 0.88818 1.16253 1.14544 0.92025 1.25671 1.02116 1.01191 0.95115 1.70144 1.32074 1.41158 1.13990 0.85305 0.81042 0.77252 0.77409 1.19524 1.21636 1.22129 1.20623 0.98278 0.83237 0.91819 1.21946 0.95076 0.95608 1.00973 0.90706 1.21672 1.01546 0.94645 1.01251 1.21752 0.92000 0.89444 0.99755 0.88927 0.93034 0.92255 0.90797 0.89093 0.79146 0.82098 0.75823 0.91875 0.91103 0.93347 0.96812 0.94073 0.92363 0.97495 0.92787 0.92564 0.91700 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.98 10.69 -148.98 -1.59 -8.58 16 3 C 0.11 1.46 6.08 71.24 0.43 1.89 16 4 C -0.15 -2.87 5.52 -19.81 -0.11 -2.98 16 5 C 0.14 2.79 10.85 84.71 0.92 3.71 16 6 N -0.50 -12.78 10.35 -194.76 -2.01 -14.80 16 7 C 0.14 3.66 10.71 85.02 0.91 4.58 16 8 C -0.20 -5.31 5.89 -19.99 -0.12 -5.43 16 9 C 0.57 17.70 7.74 86.78 0.67 18.37 16 10 O -0.57 -20.62 16.08 -3.86 -0.06 -20.69 16 11 N -0.70 -21.76 3.55 -445.29 -1.58 -23.35 16 12 C 0.17 5.48 2.21 45.02 0.10 5.58 16 13 H 0.08 2.66 7.58 -2.39 -0.02 2.64 16 14 C -0.13 -4.69 5.77 30.67 0.18 -4.51 16 15 C 0.15 6.09 6.26 86.36 0.54 6.63 16 16 N -0.61 -29.09 2.99 -699.11 -2.09 -31.18 16 17 C -0.26 -13.96 9.59 84.03 0.81 -13.15 16 18 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 19 C -0.05 -2.44 4.91 84.86 0.42 -2.03 16 20 N -0.93 -52.59 11.19 21.65 0.24 -52.35 16 21 Si 0.96 44.12 29.59 68.60 2.03 46.15 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.19 8.22 4.30 86.36 0.37 8.59 16 26 C -0.12 -4.01 2.67 -10.72 -0.03 -4.04 16 27 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 28 C -0.13 -3.90 9.06 71.98 0.65 -3.24 16 29 C 0.00 -0.07 9.40 22.73 0.21 0.14 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 34 H 0.09 0.74 8.09 -2.38 -0.02 0.72 16 35 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.16 4.13 6.42 -2.91 -0.02 4.11 16 37 H 0.40 12.51 4.80 -92.71 -0.44 12.07 16 38 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 41 H 0.01 0.58 7.74 -2.39 -0.02 0.56 16 42 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.06 2.98 6.03 -2.38 -0.01 2.97 16 44 H 0.01 0.32 6.64 -2.39 -0.02 0.31 16 45 H 0.05 1.52 7.54 -2.39 -0.02 1.51 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 48 H 0.15 3.39 7.74 -2.91 -0.02 3.37 16 Total: -1.00 -66.88 385.72 2.65 -64.23 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.52 Total: 24.99 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 7.20 Total: 15.57 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.45 Total: -121.68 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.65 Total: -29.26 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.88 2.65 -64.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942142364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.440 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds