Wall clock time and date at job start Tue Mar 31 2020 17:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.49983 * 2 1 4 4 C 1.53194 * 109.49347 * 239.93291 * 2 1 3 5 5 N 1.46929 * 108.77131 * 185.41534 * 4 2 1 6 6 C 1.36942 * 120.62882 * 233.58749 * 5 4 2 7 7 H 1.07995 * 119.99725 * 153.24543 * 6 5 4 8 8 C 1.38809 * 119.99969 * 333.24117 * 6 5 4 9 9 N 1.31622 * 119.99743 * 158.75211 * 8 6 5 10 10 Si 1.86804 * 120.00155 * 339.02656 * 8 6 5 11 11 H 1.48503 * 109.47021 * 95.06778 * 10 8 6 12 12 H 1.48492 * 109.47248 * 215.06717 * 10 8 6 13 13 H 1.48501 * 109.47058 * 335.07253 * 10 8 6 14 14 C 1.46926 * 118.74170 * 53.86153 * 5 4 2 15 15 C 1.53627 * 108.54254 * 306.09729 * 14 5 4 16 16 C 1.53039 * 109.24495 * 54.85077 * 15 14 5 17 17 H 1.09002 * 109.45698 * 58.53488 * 16 15 14 18 18 N 1.46490 * 109.45976 * 178.49207 * 16 15 14 19 19 C 1.34779 * 120.00188 * 275.07163 * 18 16 15 20 20 O 1.21583 * 119.99880 * 359.97438 * 19 18 16 21 21 C 1.47511 * 120.00104 * 180.02562 * 19 18 16 22 22 O 1.35189 * 127.15341 * 359.68423 * 21 19 18 23 23 N 1.21481 * 111.55062 * 179.83599 * 22 21 19 24 24 C 1.29073 * 111.68345 * 0.31201 * 23 22 21 25 25 C 1.35245 * 127.15448 * 179.97438 * 21 19 18 26 26 C 1.50109 * 131.33611 * 0.21186 * 25 21 19 27 27 C 1.53572 * 108.01991 * 163.73980 * 26 25 21 28 28 C 1.53000 * 109.81230 * 50.04487 * 27 26 25 29 29 C 1.50649 * 130.33144 * 180.12074 * 24 23 22 30 30 H 1.08994 * 109.47563 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46994 * 300.06781 * 1 2 3 32 32 H 1.08998 * 109.47179 * 60.06403 * 1 2 3 33 33 H 1.09004 * 109.58820 * 65.63185 * 4 2 1 34 34 H 1.08992 * 109.70679 * 305.27025 * 4 2 1 35 35 H 0.97005 * 119.99521 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58155 * 65.92606 * 14 5 4 37 37 H 1.09000 * 109.59050 * 186.34690 * 14 5 4 38 38 H 1.09000 * 109.63007 * 294.86041 * 15 14 5 39 39 H 1.09002 * 109.45670 * 174.74136 * 15 14 5 40 40 H 0.97005 * 120.00094 * 95.06546 * 18 16 15 41 41 H 1.09005 * 109.75465 * 283.36711 * 26 25 21 42 42 H 1.08994 * 109.75619 * 44.06027 * 26 25 21 43 43 H 1.09001 * 109.41776 * 170.15595 * 27 26 25 44 44 H 1.09006 * 109.41750 * 290.01424 * 27 26 25 45 45 H 1.09007 * 109.37457 * 48.45968 * 28 27 26 46 46 H 1.08999 * 109.38134 * 168.23282 * 28 27 26 47 47 H 1.08999 * 109.74479 * 43.46414 * 29 24 23 48 48 H 1.08998 * 109.78067 * 282.77594 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8289 -1.1698 6 6 4.2936 -0.3788 -2.1946 7 1 5.3039 -0.0535 -1.9954 8 6 3.7947 -0.3409 -3.4894 9 7 4.3490 0.4482 -4.3853 10 14 2.3320 -1.4040 -3.9584 11 1 1.0831 -0.6102 -3.8341 12 1 2.4864 -1.8676 -5.3606 13 1 2.2637 -2.5791 -3.0531 14 6 4.1051 -1.4319 0.0279 15 6 3.5708 -0.6955 1.2658 16 6 2.0408 -0.7235 1.2482 17 1 1.6967 -1.7577 1.2349 18 7 1.5266 -0.0537 2.4452 19 6 1.3986 -0.7393 3.5985 20 8 1.7094 -1.9138 3.6453 21 6 0.8802 -0.0650 4.8038 22 8 0.4985 1.2270 4.9161 23 7 0.1131 1.4825 6.0395 24 6 0.1818 0.4516 6.8131 25 6 0.6932 -0.6093 6.0276 26 6 0.9388 -1.9975 6.5433 27 6 0.9370 -1.9414 8.0780 28 6 -0.3099 -1.2027 8.5685 29 6 -0.1849 0.2968 8.2661 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1574 -2.1390 34 1 1.6054 -1.7212 -1.3010 35 1 4.0001 0.4750 -5.2900 36 1 3.8338 -2.4863 0.0812 37 1 5.1896 -1.3334 -0.0179 38 1 3.9159 0.3384 1.2542 39 1 3.9334 -1.1899 2.1670 40 1 1.2783 0.8833 2.4079 41 1 0.1482 -2.6639 6.1982 42 1 1.9046 -2.3569 6.1883 43 1 0.9381 -2.9555 8.4777 44 1 1.8274 -1.4153 8.4225 45 1 -1.1891 -1.6019 8.0627 46 1 -0.4153 -1.3455 9.6439 47 1 -1.1365 0.7915 8.4604 48 1 0.5925 0.7355 8.8915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942485348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:35 Heat of formation + Delta-G solvation = 33.138524 kcal Electronic energy + Delta-G solvation = -29416.394442 eV Core-core repulsion = 25474.522275 eV Total energy + Delta-G solvation = -3941.872167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.20920 -40.04072 -38.23292 -37.85410 -34.83166 -33.27982 -32.67652 -32.50059 -31.97804 -30.52687 -29.75328 -26.35207 -25.77525 -25.03568 -23.55656 -23.45110 -22.27867 -20.92531 -20.54258 -20.11245 -19.66942 -18.21562 -17.96590 -16.85736 -16.37290 -16.05198 -15.36934 -15.19788 -15.01321 -14.68984 -14.33807 -14.33146 -14.17234 -13.76681 -13.55619 -13.32622 -13.27868 -12.99198 -12.82924 -12.64096 -12.42068 -12.09877 -11.96079 -11.67475 -11.49389 -11.41312 -11.36684 -10.96388 -10.92592 -10.70878 -10.56336 -10.42172 -10.33160 -10.21861 -10.00136 -9.77569 -9.72238 -9.49105 -8.95432 -8.65503 -7.02575 -5.97102 -3.32688 0.62790 1.78445 2.44004 2.89273 3.13777 3.29943 3.47771 3.50064 3.55240 4.13855 4.35644 4.41369 4.50751 4.57938 4.68429 4.84020 4.88410 4.95557 5.01477 5.06886 5.15875 5.24623 5.29812 5.34569 5.40276 5.42932 5.52380 5.59299 5.63920 5.69761 5.83561 5.83900 5.84873 5.89352 5.96127 6.05534 6.09020 6.21308 6.30467 6.36963 6.56729 6.57584 6.62501 6.67209 6.88251 7.31309 7.81090 7.92776 7.96677 8.30671 8.91128 9.69460 10.06266 11.18709 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002608 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.839229 B =10734.232092 C =10976.192703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 H 0.081 0.919 4 C 0.136 3.864 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.087 0.913 8 C 0.023 3.977 9 N -0.907 5.907 10 Si 0.878 3.122 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.156 3.844 17 H 0.088 0.912 18 N -0.704 5.704 19 C 0.603 3.397 20 O -0.511 6.511 21 C -0.076 4.076 22 O 0.100 5.900 23 N -0.335 5.335 24 C 0.015 3.985 25 C -0.123 4.123 26 C -0.049 4.049 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.040 4.040 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.404 0.596 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 -2.122 25.254 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 H 0.099 0.901 4 C 0.010 3.990 5 N -0.329 5.329 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.194 1.194 14 C 0.025 3.975 15 C -0.184 4.184 16 C 0.053 3.947 17 H 0.106 0.894 18 N -0.354 5.354 19 C 0.386 3.614 20 O -0.387 6.387 21 C -0.141 4.141 22 O 0.030 5.970 23 N -0.038 5.038 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.086 4.086 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.078 4.078 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.239 0.761 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.520 -1.667 25.230 27.387 hybrid contribution -0.816 -0.598 -0.405 1.090 sum -11.336 -2.264 24.825 27.385 Atomic orbital electron populations 1.21815 0.95483 1.01738 1.01437 1.22003 0.94946 1.01198 0.95502 0.90098 1.21372 0.84918 0.97301 0.95438 1.44424 1.00639 1.69814 1.18041 1.18927 0.98293 1.36347 0.85251 0.89565 1.25281 0.97964 0.98618 0.95693 1.69848 1.43284 1.37289 1.04533 0.87007 0.82666 0.82472 0.77006 1.21603 1.23114 1.19352 1.20986 0.97434 0.94060 0.85062 1.22498 0.94106 1.02092 0.99665 1.21162 0.94318 0.97207 0.82008 0.89408 1.46200 1.64466 1.14816 1.09877 1.16502 0.78380 0.85685 0.80840 1.90859 1.50122 1.14409 1.83319 1.23597 1.07049 0.85565 0.97858 1.85258 1.60905 1.25743 1.25046 1.73439 1.15317 1.23647 0.91379 1.23416 1.02408 0.89163 0.99557 1.21107 1.01103 0.99177 0.91402 1.20117 1.04014 0.89672 0.94820 1.21682 0.98324 1.01278 0.94655 1.21632 0.98950 0.93372 1.01773 1.20134 1.02763 0.98050 0.86876 0.92836 0.93049 0.92315 0.90508 0.95323 0.92756 0.95556 0.91430 0.91537 0.92082 0.76083 0.89420 0.88792 0.90528 0.91399 0.91222 0.90415 0.89469 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.02 37.16 0.34 -1.70 16 2 C -0.12 -1.89 2.46 -90.50 -0.22 -2.11 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 4 C 0.14 2.84 3.48 -3.71 -0.01 2.83 16 5 N -0.61 -13.97 2.77 -172.05 -0.48 -14.45 16 6 C -0.26 -7.11 10.04 -15.06 -0.15 -7.26 16 7 H 0.09 2.52 8.05 -52.49 -0.42 2.10 16 8 C 0.02 0.67 5.23 -17.43 -0.09 0.57 16 9 N -0.91 -27.45 13.97 55.49 0.78 -26.67 16 10 Si 0.88 21.95 24.35 -169.99 -4.14 17.81 16 11 H -0.29 -6.91 6.70 56.52 0.38 -6.53 16 12 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 13 H -0.27 -6.59 6.49 56.52 0.37 -6.22 16 14 C 0.15 2.93 6.54 -3.48 -0.02 2.91 16 15 C -0.14 -2.35 5.67 -26.39 -0.15 -2.50 16 16 C 0.16 2.39 1.88 -67.89 -0.13 2.27 16 17 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 18 N -0.70 -9.09 4.36 -54.82 -0.24 -9.33 16 19 C 0.60 8.22 7.78 -12.48 -0.10 8.12 16 20 O -0.51 -8.16 15.59 5.29 0.08 -8.08 16 21 C -0.08 -0.94 7.28 -36.87 -0.27 -1.21 16 22 O 0.10 1.23 11.10 13.82 0.15 1.38 16 23 N -0.33 -4.13 12.03 33.15 0.40 -3.73 16 24 C 0.02 0.16 7.21 -82.51 -0.60 -0.43 16 25 C -0.12 -1.37 6.02 -104.71 -0.63 -2.00 16 26 C -0.05 -0.44 5.59 -27.87 -0.16 -0.60 16 27 C -0.12 -0.77 5.87 -26.43 -0.16 -0.92 16 28 C -0.12 -0.66 5.84 -26.49 -0.15 -0.81 16 29 C -0.04 -0.28 6.32 -27.66 -0.17 -0.45 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.61 7.36 -51.93 -0.38 0.22 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.76 4.49 -51.93 -0.23 1.53 16 34 H 0.03 0.60 7.00 -51.93 -0.36 0.24 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.40 4.48 8.15 -40.82 -0.33 4.15 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.94 7.77 -51.93 -0.40 0.54 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 45 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -31.50 373.13 -8.13 -39.62 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.63 Total: 1.13 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.67 Total: -3.31 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.46 Total: -54.19 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.24 Total: -6.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.50 -8.13 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942485348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.762 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds