Wall clock time and date at job start Tue Mar 31 2020 17:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.49983 * 2 1 4 4 C 1.53194 * 109.49347 * 239.93291 * 2 1 3 5 5 N 1.46929 * 108.77131 * 185.41534 * 4 2 1 6 6 C 1.36942 * 120.62882 * 233.58749 * 5 4 2 7 7 H 1.07995 * 119.99725 * 153.24543 * 6 5 4 8 8 C 1.38809 * 119.99969 * 333.24117 * 6 5 4 9 9 N 1.31622 * 119.99743 * 158.75211 * 8 6 5 10 10 Si 1.86804 * 120.00155 * 339.02656 * 8 6 5 11 11 H 1.48503 * 109.47021 * 95.06778 * 10 8 6 12 12 H 1.48492 * 109.47248 * 215.06717 * 10 8 6 13 13 H 1.48501 * 109.47058 * 335.07253 * 10 8 6 14 14 C 1.46926 * 118.74170 * 53.86153 * 5 4 2 15 15 C 1.53627 * 108.54254 * 306.09729 * 14 5 4 16 16 C 1.53039 * 109.24495 * 54.85077 * 15 14 5 17 17 H 1.09002 * 109.45698 * 58.53488 * 16 15 14 18 18 N 1.46490 * 109.45976 * 178.49207 * 16 15 14 19 19 C 1.34779 * 120.00188 * 275.07163 * 18 16 15 20 20 O 1.21583 * 119.99880 * 359.97438 * 19 18 16 21 21 C 1.47511 * 120.00104 * 180.02562 * 19 18 16 22 22 O 1.35189 * 127.15341 * 359.68423 * 21 19 18 23 23 N 1.21481 * 111.55062 * 179.83599 * 22 21 19 24 24 C 1.29073 * 111.68345 * 0.31201 * 23 22 21 25 25 C 1.35245 * 127.15448 * 179.97438 * 21 19 18 26 26 C 1.50109 * 131.33611 * 0.21186 * 25 21 19 27 27 C 1.53572 * 108.01991 * 163.73980 * 26 25 21 28 28 C 1.53000 * 109.81230 * 50.04487 * 27 26 25 29 29 C 1.50649 * 130.33144 * 180.12074 * 24 23 22 30 30 H 1.08994 * 109.47563 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46994 * 300.06781 * 1 2 3 32 32 H 1.08998 * 109.47179 * 60.06403 * 1 2 3 33 33 H 1.09004 * 109.58820 * 65.63185 * 4 2 1 34 34 H 1.08992 * 109.70679 * 305.27025 * 4 2 1 35 35 H 0.97005 * 119.99521 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58155 * 65.92606 * 14 5 4 37 37 H 1.09000 * 109.59050 * 186.34690 * 14 5 4 38 38 H 1.09000 * 109.63007 * 294.86041 * 15 14 5 39 39 H 1.09002 * 109.45670 * 174.74136 * 15 14 5 40 40 H 0.97005 * 120.00094 * 95.06546 * 18 16 15 41 41 H 1.09005 * 109.75465 * 283.36711 * 26 25 21 42 42 H 1.08994 * 109.75619 * 44.06027 * 26 25 21 43 43 H 1.09001 * 109.41776 * 170.15595 * 27 26 25 44 44 H 1.09006 * 109.41750 * 290.01424 * 27 26 25 45 45 H 1.09007 * 109.37457 * 48.45968 * 28 27 26 46 46 H 1.08999 * 109.38134 * 168.23282 * 28 27 26 47 47 H 1.08999 * 109.74479 * 43.46414 * 29 24 23 48 48 H 1.08998 * 109.78067 * 282.77594 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8289 -1.1698 6 6 4.2936 -0.3788 -2.1946 7 1 5.3039 -0.0535 -1.9954 8 6 3.7947 -0.3409 -3.4894 9 7 4.3490 0.4482 -4.3853 10 14 2.3320 -1.4040 -3.9584 11 1 1.0831 -0.6102 -3.8341 12 1 2.4864 -1.8676 -5.3606 13 1 2.2637 -2.5791 -3.0531 14 6 4.1051 -1.4319 0.0279 15 6 3.5708 -0.6955 1.2658 16 6 2.0408 -0.7235 1.2482 17 1 1.6967 -1.7577 1.2349 18 7 1.5266 -0.0537 2.4452 19 6 1.3986 -0.7393 3.5985 20 8 1.7094 -1.9138 3.6453 21 6 0.8802 -0.0650 4.8038 22 8 0.4985 1.2270 4.9161 23 7 0.1131 1.4825 6.0395 24 6 0.1818 0.4516 6.8131 25 6 0.6932 -0.6093 6.0276 26 6 0.9388 -1.9975 6.5433 27 6 0.9370 -1.9414 8.0780 28 6 -0.3099 -1.2027 8.5685 29 6 -0.1849 0.2968 8.2661 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1574 -2.1390 34 1 1.6054 -1.7212 -1.3010 35 1 4.0001 0.4750 -5.2900 36 1 3.8338 -2.4863 0.0812 37 1 5.1896 -1.3334 -0.0179 38 1 3.9159 0.3384 1.2542 39 1 3.9334 -1.1899 2.1670 40 1 1.2783 0.8833 2.4079 41 1 0.1482 -2.6639 6.1982 42 1 1.9046 -2.3569 6.1883 43 1 0.9381 -2.9555 8.4777 44 1 1.8274 -1.4153 8.4225 45 1 -1.1891 -1.6019 8.0627 46 1 -0.4153 -1.3455 9.6439 47 1 -1.1365 0.7915 8.4604 48 1 0.5925 0.7355 8.8915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942485348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:34 Heat of formation + Delta-G solvation = 13.379906 kcal Electronic energy + Delta-G solvation = -29417.251240 eV Core-core repulsion = 25474.522275 eV Total energy + Delta-G solvation = -3942.728965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -46.07121 -41.24060 -39.46399 -38.68875 -36.33241 -34.36409 -33.86579 -33.60287 -33.39479 -31.92558 -30.72332 -27.70676 -27.20825 -26.02477 -24.83844 -24.24697 -23.55836 -22.44311 -21.51863 -21.14204 -20.73858 -19.32209 -18.85360 -18.67112 -17.70924 -16.92361 -16.87996 -16.17362 -16.07812 -15.97327 -15.69669 -15.21058 -15.09223 -14.92567 -14.85285 -14.68330 -14.40933 -14.35546 -14.05912 -13.66273 -13.46766 -13.40334 -13.23491 -13.00421 -12.84378 -12.55787 -12.35361 -12.07051 -11.99043 -11.93033 -11.88174 -11.75181 -11.56307 -11.51933 -11.41387 -11.25829 -10.99286 -10.70832 -10.62749 -10.14478 -8.97216 -8.16108 -5.47867 -0.31630 0.96807 1.29884 1.42582 1.45613 1.51137 1.84718 2.11309 2.41681 2.83940 3.04110 3.30333 3.37847 3.59811 3.70106 3.81234 3.90557 3.94360 3.97892 4.02323 4.25666 4.29151 4.37305 4.41210 4.42922 4.51972 4.52350 4.57191 4.67337 4.76427 4.84531 4.86183 4.89281 4.93181 4.97124 4.98679 5.05930 5.13337 5.14165 5.19094 5.28005 5.28844 5.31827 5.39324 5.45261 5.86515 6.12887 6.24864 6.85040 6.90433 6.98489 7.61402 8.01328 9.03564 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002608 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.839229 B =10734.232092 C =10976.192703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.077 0.923 4 C 0.130 3.870 5 N -0.619 5.619 6 C -0.248 4.248 7 H 0.054 0.946 8 C -0.034 4.034 9 N -0.955 5.955 10 Si 0.940 3.060 11 H -0.271 1.271 12 H -0.313 1.313 13 H -0.260 1.260 14 C 0.147 3.853 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.082 0.918 18 N -0.694 5.694 19 C 0.609 3.391 20 O -0.535 6.535 21 C -0.092 4.092 22 O 0.091 5.909 23 N -0.354 5.354 24 C 0.020 3.980 25 C -0.122 4.122 26 C -0.052 4.052 27 C -0.118 4.118 28 C -0.115 4.115 29 C -0.043 4.043 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.415 0.585 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -2.869 28.371 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.095 0.905 4 C 0.005 3.995 5 N -0.343 5.343 6 C -0.377 4.377 7 H 0.072 0.928 8 C -0.228 4.228 9 N -0.601 5.601 10 Si 0.769 3.231 11 H -0.198 1.198 12 H -0.242 1.242 13 H -0.185 1.185 14 C 0.022 3.978 15 C -0.172 4.172 16 C 0.063 3.937 17 H 0.100 0.900 18 N -0.345 5.345 19 C 0.393 3.607 20 O -0.413 6.413 21 C -0.156 4.156 22 O 0.024 5.976 23 N -0.060 5.060 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.089 4.089 27 C -0.156 4.156 28 C -0.153 4.153 29 C -0.081 4.081 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.252 0.748 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.116 0.884 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.773 -2.409 28.388 31.222 hybrid contribution -0.050 -0.355 -1.249 1.300 sum -12.823 -2.764 27.139 30.143 Atomic orbital electron populations 1.21789 0.93074 1.02452 1.02691 1.21801 0.96846 1.00236 0.93737 0.90481 1.21421 0.83537 0.97711 0.96857 1.44536 1.01499 1.70375 1.17939 1.18863 0.97539 1.34780 0.86527 0.92831 1.25877 1.01317 0.99907 0.95747 1.69973 1.45843 1.39395 1.04928 0.85994 0.80232 0.80930 0.75908 1.19779 1.24190 1.18458 1.21112 0.97182 0.94671 0.84849 1.22330 0.95018 1.01443 0.98371 1.20849 0.93365 0.96937 0.82504 0.90011 1.45950 1.64226 1.15231 1.09049 1.16540 0.77754 0.85322 0.81062 1.90847 1.51206 1.15479 1.83784 1.23395 1.08352 0.86032 0.97814 1.85237 1.61456 1.25608 1.25326 1.73427 1.16282 1.24561 0.91681 1.24028 1.00966 0.88191 1.00939 1.21506 0.99955 1.00213 0.91040 1.20225 1.03276 0.88426 0.96975 1.21696 0.98885 1.02617 0.92362 1.21649 0.98263 0.92000 1.03364 1.20392 1.03705 0.99425 0.84567 0.92395 0.90699 0.92231 0.92623 0.94807 0.92959 0.94721 0.92123 0.91903 0.90977 0.74801 0.89216 0.90058 0.88754 0.91320 0.91426 0.87794 0.88368 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.02 71.98 0.65 -2.91 16 2 C -0.11 -3.28 2.46 -10.71 -0.03 -3.30 16 3 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 4 C 0.13 5.29 3.48 86.36 0.30 5.59 16 5 N -0.62 -28.55 2.77 -698.24 -1.94 -30.49 16 6 C -0.25 -13.89 10.04 84.03 0.84 -13.04 16 7 H 0.05 3.29 8.05 -2.91 -0.02 3.26 16 8 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 9 N -0.96 -59.71 13.97 21.65 0.30 -59.41 16 10 Si 0.94 45.93 24.35 68.60 1.67 47.60 16 11 H -0.27 -12.37 6.70 99.48 0.67 -11.70 16 12 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 13 H -0.26 -12.18 6.49 99.48 0.65 -11.53 16 14 C 0.15 5.66 6.54 86.51 0.57 6.22 16 15 C -0.13 -4.17 5.67 30.82 0.17 -4.00 16 16 C 0.17 4.85 1.88 45.02 0.08 4.93 16 17 H 0.08 2.55 7.58 -2.39 -0.02 2.53 16 18 N -0.69 -16.68 4.36 -445.62 -1.94 -18.63 16 19 C 0.61 15.73 7.78 86.69 0.67 16.40 16 20 O -0.54 -16.41 15.59 -3.98 -0.06 -16.48 16 21 C -0.09 -2.15 7.28 24.03 0.17 -1.98 16 22 O 0.09 2.13 11.10 59.46 0.66 2.79 16 23 N -0.35 -8.23 12.03 -50.84 -0.61 -8.84 16 24 C 0.02 0.37 7.21 43.77 0.32 0.69 16 25 C -0.12 -2.52 6.02 -19.92 -0.12 -2.64 16 26 C -0.05 -0.84 5.59 29.86 0.17 -0.68 16 27 C -0.12 -1.14 5.87 30.79 0.18 -0.96 16 28 C -0.12 -0.87 5.84 30.75 0.18 -0.69 16 29 C -0.04 -0.46 6.32 29.99 0.19 -0.27 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.53 7.36 -2.39 -0.02 1.52 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.51 4.49 -2.39 -0.01 2.49 16 34 H 0.03 1.35 7.00 -2.39 -0.02 1.34 16 35 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.42 8.37 8.15 -92.70 -0.76 7.61 16 41 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.08 1.54 7.77 -2.39 -0.02 1.53 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.67 8.11 -2.38 -0.02 0.66 16 45 H 0.07 0.57 8.10 -2.38 -0.02 0.55 16 46 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -69.45 373.13 2.99 -66.45 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.12 Total: 15.15 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.80 Total: 1.85 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -4.19 Total: -117.37 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.60 Total: -13.69 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.67 Total: 47.60 kcal Total: -69.45 2.99 -66.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942485348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.833 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds