Wall clock time and date at job start Tue Mar 31 2020 17:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35906 * 117.00179 * 2 1 4 4 C 1.39136 * 120.47329 * 359.72896 * 3 2 1 5 5 C 1.38542 * 118.37466 * 180.27426 * 4 3 2 6 6 C 1.38251 * 119.21782 * 359.97237 * 5 4 3 7 7 N 1.31844 * 120.89186 * 0.02562 * 6 5 4 8 8 C 1.31839 * 121.77978 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.65913 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47468 * 269.97673 * 9 8 7 11 11 O 1.21282 * 119.99770 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00469 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00307 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46406 * 34.99714 * 13 12 10 15 15 C 1.53046 * 109.45912 * 275.02676 * 13 12 10 16 16 C 1.53188 * 109.31371 * 178.61381 * 15 13 12 17 17 N 1.46927 * 108.77511 * 54.63825 * 16 15 13 18 18 C 1.36934 * 120.63555 * 126.41655 * 17 16 15 19 19 H 1.08003 * 119.99689 * 332.57910 * 18 17 16 20 20 C 1.38808 * 120.00330 * 152.58557 * 18 17 16 21 21 N 1.31622 * 119.99891 * 159.29988 * 20 18 17 22 22 Si 1.86798 * 119.99783 * 339.29064 * 20 18 17 23 23 H 1.48499 * 109.47060 * 92.96911 * 22 20 18 24 24 H 1.48506 * 109.46914 * 212.96400 * 22 20 18 25 25 H 1.48490 * 109.47490 * 332.96263 * 22 20 18 26 26 C 1.46933 * 118.73580 * 306.38487 * 17 16 15 27 27 C 1.53036 * 109.46397 * 154.97405 * 13 12 10 28 28 H 1.08999 * 109.49978 * 61.42842 * 27 13 12 29 29 C 1.53010 * 109.49595 * 301.33612 * 27 13 12 30 30 H 1.08994 * 109.47114 * 59.99774 * 1 2 3 31 31 H 1.09002 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46508 * 299.99789 * 1 2 3 33 33 H 1.08005 * 120.81306 * 0.24107 * 4 3 2 34 34 H 1.07997 * 120.38646 * 179.97438 * 5 4 3 35 35 H 1.08005 * 119.55481 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46960 * 29.98084 * 9 8 7 37 37 H 1.09000 * 109.47053 * 149.98233 * 9 8 7 38 38 H 0.97002 * 119.99900 * 0.02562 * 12 10 9 39 39 H 1.09001 * 109.49329 * 298.56940 * 15 13 12 40 40 H 1.09001 * 109.49577 * 58.62472 * 15 13 12 41 41 H 1.08998 * 109.58475 * 174.42240 * 16 15 13 42 42 H 1.08997 * 109.58927 * 294.70634 * 16 15 13 43 43 H 0.96998 * 119.99727 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.58570 * 173.39752 * 26 17 16 45 45 H 1.08992 * 109.59058 * 293.82671 * 26 17 16 46 46 H 1.08997 * 109.47063 * 59.99969 * 29 27 13 47 47 H 1.08998 * 109.47109 * 179.97438 * 29 27 13 48 48 H 1.08998 * 109.46916 * 299.99884 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3840 -0.0057 5 6 1.9718 3.5946 -0.0113 6 6 3.3543 3.5974 -0.0105 7 7 4.0335 2.4674 -0.0049 8 6 3.4307 1.2949 0.0005 9 6 4.2543 0.0329 0.0060 10 6 4.5281 -0.3946 -1.4128 11 8 4.0973 0.2613 -2.3376 12 7 5.2526 -1.5051 -1.6542 13 6 5.5193 -1.9203 -3.0336 14 1 5.6448 -1.0377 -3.6608 15 6 4.3433 -2.7512 -3.5523 16 6 4.6100 -3.1544 -5.0059 17 7 5.9090 -3.8374 -5.0765 18 6 6.0153 -5.0774 -5.6477 19 1 5.1670 -5.7458 -5.6488 20 6 7.2132 -5.4753 -6.2250 21 7 7.4650 -6.7549 -6.4029 22 14 8.4679 -4.1947 -6.7496 23 1 9.4348 -3.9678 -5.6456 24 1 9.1939 -4.6766 -7.9521 25 1 7.7727 -2.9219 -7.0682 26 6 7.0920 -3.1641 -4.5233 27 6 6.7973 -2.7611 -3.0750 28 1 6.6636 -3.6565 -2.4680 29 6 7.9662 -1.9408 -2.5255 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.2184 2.3518 -0.0063 34 1 1.4235 4.5250 -0.0162 35 1 3.8851 4.5380 -0.0144 36 1 5.1984 0.2175 0.5186 37 1 3.7078 -0.7553 0.5238 38 1 5.5975 -2.0295 -0.9146 39 1 4.2329 -3.6467 -2.9407 40 1 3.4291 -2.1601 -3.5000 41 1 3.8242 -3.8277 -5.3484 42 1 4.6281 -2.2642 -5.6346 43 1 8.3020 -7.0329 -6.8067 44 1 7.9439 -3.8438 -4.5473 45 1 7.3150 -2.2745 -5.1121 46 1 7.7550 -1.6517 -1.4960 47 1 8.8762 -2.5402 -2.5548 48 1 8.1001 -1.0464 -3.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942579814.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:58 Heat of formation + Delta-G solvation = -15.850269 kcal Electronic energy + Delta-G solvation = -29267.507853 eV Core-core repulsion = 25323.511373 eV Total energy + Delta-G solvation = -3943.996480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07450 -39.69070 -38.39479 -37.78679 -34.60326 -33.37764 -32.41527 -31.93498 -31.64874 -30.16555 -28.40567 -27.71161 -26.17364 -24.93906 -23.14910 -23.07750 -22.27726 -20.82148 -20.24041 -19.56781 -18.38669 -17.41571 -17.23617 -16.73196 -16.52522 -16.02082 -15.83224 -15.05815 -14.86571 -14.59967 -14.27062 -14.20225 -14.06974 -13.69022 -13.55115 -13.27816 -13.22990 -13.09612 -12.61258 -12.55527 -12.31419 -12.12110 -11.79991 -11.75099 -11.69934 -11.59425 -11.41219 -10.83836 -10.62957 -10.45072 -10.24447 -10.09364 -9.99190 -9.82355 -9.77864 -9.57489 -9.42412 -8.70229 -8.62081 -8.56151 -6.96274 -5.93547 -3.28962 0.84189 1.02664 2.82752 2.88025 3.22854 3.33359 3.50705 3.54724 3.67588 4.05922 4.32382 4.42944 4.54705 4.67130 4.78507 4.83853 4.87474 4.95649 5.00096 5.09380 5.14863 5.19166 5.24482 5.34505 5.41599 5.49804 5.54666 5.72766 5.76872 5.81383 5.94084 5.96512 6.09385 6.16034 6.18740 6.18901 6.37501 6.43680 6.45476 6.64933 6.68071 6.74895 6.84444 6.89502 6.97908 7.71052 7.76655 7.98012 8.34608 8.42515 8.95818 9.73763 10.11891 11.22482 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002732 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.528417 B =10244.915820 C =10859.370798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.135 4.135 6 C 0.062 3.938 7 N -0.439 5.439 8 C 0.129 3.871 9 C -0.088 4.088 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.722 5.722 13 C 0.158 3.842 14 H 0.081 0.919 15 C -0.141 4.141 16 C 0.151 3.849 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.086 0.914 20 C 0.023 3.977 21 N -0.909 5.909 22 Si 0.880 3.120 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.135 3.865 27 C -0.115 4.115 28 H 0.078 0.922 29 C -0.145 4.145 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.397 0.603 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 17.837 18.441 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.155 4.155 6 C -0.095 4.095 7 N -0.148 5.148 8 C -0.011 4.011 9 C -0.128 4.128 10 C 0.307 3.693 11 O -0.413 6.413 12 N -0.373 5.373 13 C 0.055 3.945 14 H 0.100 0.900 15 C -0.181 4.181 16 C 0.024 3.976 17 N -0.330 5.330 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.176 4.176 21 N -0.552 5.552 22 Si 0.710 3.290 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.195 1.195 26 C 0.009 3.991 27 C -0.136 4.136 28 H 0.096 0.904 29 C -0.203 4.203 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.843 17.993 17.666 27.448 hybrid contribution -0.302 0.575 -0.005 0.650 sum -11.145 18.569 17.661 27.945 Atomic orbital electron populations 1.23121 0.78091 1.04480 1.01256 1.86115 1.21572 1.25840 1.88169 1.19838 0.93074 0.85243 0.97315 1.21657 1.00716 0.92145 1.04728 1.21964 0.95763 0.98194 0.99552 1.22587 0.91443 0.96288 0.99152 1.67443 1.40030 0.97516 1.09775 1.19927 0.87729 0.93382 1.00098 1.20463 1.01601 0.94493 0.96280 1.20196 0.78102 0.80476 0.90488 1.90704 1.50769 1.53939 1.45910 1.46175 1.54676 1.26915 1.09504 1.20975 0.94815 0.97349 0.81408 0.90048 1.22378 0.97157 0.99195 0.99368 1.20891 0.88604 0.95579 0.92506 1.44407 1.02760 1.18492 1.67305 1.18929 0.99949 0.88882 1.30875 0.89649 1.25277 0.97785 0.95720 0.98797 1.69838 1.24887 1.13885 1.46567 0.86991 0.81485 0.82854 0.77651 1.21533 1.23149 1.19489 1.21372 0.91471 0.96156 0.90084 1.21972 0.93274 0.97969 1.00359 0.90369 1.21792 0.98256 0.99951 1.00255 0.92471 0.87764 0.92660 0.84339 0.84551 0.82469 0.87140 0.87042 0.76937 0.91846 0.92290 0.91680 0.95801 0.92792 0.90548 0.95544 0.93030 0.92553 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.83 101.05 0.99 1.16 16 2 O -0.31 -3.28 9.55 -19.44 -0.19 -3.47 16 3 C 0.09 1.08 6.67 -39.07 -0.26 0.82 16 4 C -0.17 -1.54 9.14 -39.14 -0.36 -1.89 16 5 C -0.13 -1.15 10.11 -39.46 -0.40 -1.55 16 6 C 0.06 0.63 11.18 -17.54 -0.20 0.44 16 7 N -0.44 -5.68 10.27 -9.35 -0.10 -5.77 16 8 C 0.13 1.65 5.29 -82.42 -0.44 1.21 16 9 C -0.09 -0.99 5.77 -29.04 -0.17 -1.15 16 10 C 0.52 7.64 7.79 -10.99 -0.09 7.55 16 11 O -0.54 -10.14 15.70 5.56 0.09 -10.05 16 12 N -0.72 -9.75 4.36 -53.77 -0.23 -9.98 16 13 C 0.16 2.64 1.88 -67.89 -0.13 2.51 16 14 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 15 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 16 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 17 N -0.61 -14.56 2.77 -172.32 -0.48 -15.04 16 18 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 19 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 20 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 21 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16 22 Si 0.88 22.57 24.35 -169.99 -4.14 18.43 16 23 H -0.29 -7.05 6.62 56.52 0.37 -6.67 16 24 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.27 -6.88 6.64 56.52 0.38 -6.51 16 26 C 0.14 2.96 3.49 -3.71 -0.01 2.95 16 27 C -0.11 -1.99 2.46 -90.50 -0.22 -2.21 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 C -0.14 -2.11 9.03 37.16 0.34 -1.78 16 30 H 0.06 0.36 7.69 -51.93 -0.40 -0.04 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.26 7.71 -51.93 -0.40 -0.14 16 33 H 0.14 0.89 6.45 -52.48 -0.34 0.55 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 1.03 7.53 -51.93 -0.39 0.64 16 38 H 0.40 4.21 8.31 -40.82 -0.34 3.87 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.08 1.82 4.50 -51.93 -0.23 1.58 16 45 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 46 H 0.05 0.63 7.36 -51.93 -0.38 0.24 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -35.68 381.13 -7.38 -43.05 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.50 Total: 2.54 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.35 Total: 1.69 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.03 Total: -57.93 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.10 Total: -13.52 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.68 -7.38 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942579814.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.203 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds