Wall clock time and date at job start Tue Mar 31 2020 17:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35906 * 117.00179 * 2 1 4 4 C 1.39136 * 120.47329 * 359.72896 * 3 2 1 5 5 C 1.38542 * 118.37466 * 180.27426 * 4 3 2 6 6 C 1.38251 * 119.21782 * 359.97237 * 5 4 3 7 7 N 1.31844 * 120.89186 * 0.02562 * 6 5 4 8 8 C 1.31839 * 121.77978 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.65913 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47468 * 269.97673 * 9 8 7 11 11 O 1.21282 * 119.99770 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00469 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00307 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46406 * 34.99714 * 13 12 10 15 15 C 1.53046 * 109.45912 * 275.02676 * 13 12 10 16 16 C 1.53188 * 109.31371 * 178.61381 * 15 13 12 17 17 N 1.46927 * 108.77511 * 54.63825 * 16 15 13 18 18 C 1.36934 * 120.63555 * 126.41655 * 17 16 15 19 19 H 1.08003 * 119.99689 * 332.57910 * 18 17 16 20 20 C 1.38808 * 120.00330 * 152.58557 * 18 17 16 21 21 N 1.31622 * 119.99891 * 159.29988 * 20 18 17 22 22 Si 1.86798 * 119.99783 * 339.29064 * 20 18 17 23 23 H 1.48499 * 109.47060 * 92.96911 * 22 20 18 24 24 H 1.48506 * 109.46914 * 212.96400 * 22 20 18 25 25 H 1.48490 * 109.47490 * 332.96263 * 22 20 18 26 26 C 1.46933 * 118.73580 * 306.38487 * 17 16 15 27 27 C 1.53036 * 109.46397 * 154.97405 * 13 12 10 28 28 H 1.08999 * 109.49978 * 61.42842 * 27 13 12 29 29 C 1.53010 * 109.49595 * 301.33612 * 27 13 12 30 30 H 1.08994 * 109.47114 * 59.99774 * 1 2 3 31 31 H 1.09002 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46508 * 299.99789 * 1 2 3 33 33 H 1.08005 * 120.81306 * 0.24107 * 4 3 2 34 34 H 1.07997 * 120.38646 * 179.97438 * 5 4 3 35 35 H 1.08005 * 119.55481 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.46960 * 29.98084 * 9 8 7 37 37 H 1.09000 * 109.47053 * 149.98233 * 9 8 7 38 38 H 0.97002 * 119.99900 * 0.02562 * 12 10 9 39 39 H 1.09001 * 109.49329 * 298.56940 * 15 13 12 40 40 H 1.09001 * 109.49577 * 58.62472 * 15 13 12 41 41 H 1.08998 * 109.58475 * 174.42240 * 16 15 13 42 42 H 1.08997 * 109.58927 * 294.70634 * 16 15 13 43 43 H 0.96998 * 119.99727 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.58570 * 173.39752 * 26 17 16 45 45 H 1.08992 * 109.59058 * 293.82671 * 26 17 16 46 46 H 1.08997 * 109.47063 * 59.99969 * 29 27 13 47 47 H 1.08998 * 109.47109 * 179.97438 * 29 27 13 48 48 H 1.08998 * 109.46916 * 299.99884 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3840 -0.0057 5 6 1.9718 3.5946 -0.0113 6 6 3.3543 3.5974 -0.0105 7 7 4.0335 2.4674 -0.0049 8 6 3.4307 1.2949 0.0005 9 6 4.2543 0.0329 0.0060 10 6 4.5281 -0.3946 -1.4128 11 8 4.0973 0.2613 -2.3376 12 7 5.2526 -1.5051 -1.6542 13 6 5.5193 -1.9203 -3.0336 14 1 5.6448 -1.0377 -3.6608 15 6 4.3433 -2.7512 -3.5523 16 6 4.6100 -3.1544 -5.0059 17 7 5.9090 -3.8374 -5.0765 18 6 6.0153 -5.0774 -5.6477 19 1 5.1670 -5.7458 -5.6488 20 6 7.2132 -5.4753 -6.2250 21 7 7.4650 -6.7549 -6.4029 22 14 8.4679 -4.1947 -6.7496 23 1 9.4348 -3.9678 -5.6456 24 1 9.1939 -4.6766 -7.9521 25 1 7.7727 -2.9219 -7.0682 26 6 7.0920 -3.1641 -4.5233 27 6 6.7973 -2.7611 -3.0750 28 1 6.6636 -3.6565 -2.4680 29 6 7.9662 -1.9408 -2.5255 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.2184 2.3518 -0.0063 34 1 1.4235 4.5250 -0.0162 35 1 3.8851 4.5380 -0.0144 36 1 5.1984 0.2175 0.5186 37 1 3.7078 -0.7553 0.5238 38 1 5.5975 -2.0295 -0.9146 39 1 4.2329 -3.6467 -2.9407 40 1 3.4291 -2.1601 -3.5000 41 1 3.8242 -3.8277 -5.3484 42 1 4.6281 -2.2642 -5.6346 43 1 8.3020 -7.0329 -6.8067 44 1 7.9439 -3.8438 -4.5473 45 1 7.3150 -2.2745 -5.1121 46 1 7.7550 -1.6517 -1.4960 47 1 8.8762 -2.5402 -2.5548 48 1 8.1001 -1.0464 -3.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942579814.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:57 Heat of formation + Delta-G solvation = -41.535914 kcal Electronic energy + Delta-G solvation = -29268.621666 eV Core-core repulsion = 25323.511373 eV Total energy + Delta-G solvation = -3945.110293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84930 -40.91689 -39.34289 -39.02060 -36.21253 -34.29460 -33.96113 -33.60065 -32.47819 -31.76498 -29.29685 -28.30261 -27.67304 -26.68666 -24.49315 -23.83647 -23.38848 -22.42777 -21.43554 -21.08902 -19.10281 -18.92594 -18.14535 -17.99422 -17.71952 -17.13501 -16.71376 -16.51507 -16.13984 -16.01382 -15.32747 -15.27579 -15.11839 -14.93390 -14.84361 -14.66821 -14.38745 -14.36033 -14.03292 -13.98378 -13.51276 -13.23338 -13.15767 -13.00552 -12.88288 -12.54369 -12.37647 -12.34704 -12.30992 -12.06281 -11.93887 -11.71023 -11.55147 -11.30018 -11.03212 -10.72913 -10.58387 -10.55205 -9.98453 -9.32118 -8.97786 -8.17662 -5.49750 0.11457 0.30977 1.27810 1.40634 1.49380 1.71522 2.17170 2.26341 2.39913 2.85409 3.03390 3.29914 3.32046 3.64557 3.65594 3.83553 3.93205 3.97909 4.05148 4.09922 4.27333 4.28377 4.34706 4.36425 4.43715 4.48375 4.52687 4.52724 4.62276 4.69412 4.70998 4.77490 4.83701 4.87534 4.97020 5.00621 5.05946 5.07762 5.13003 5.20508 5.28878 5.44272 5.51685 5.56654 5.85493 6.11694 6.23525 6.63729 6.88773 7.01834 7.33166 7.59572 8.00813 9.02120 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002732 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.528417 B =10244.915820 C =10859.370798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.078 3.922 4 C -0.171 4.171 5 C -0.128 4.128 6 C 0.045 3.955 7 N -0.468 5.468 8 C 0.095 3.905 9 C -0.079 4.079 10 C 0.523 3.477 11 O -0.582 6.582 12 N -0.708 5.708 13 C 0.169 3.831 14 H 0.061 0.939 15 C -0.127 4.127 16 C 0.147 3.853 17 N -0.619 5.619 18 C -0.248 4.248 19 H 0.055 0.945 20 C -0.030 4.030 21 N -0.954 5.954 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.310 1.310 25 H -0.269 1.269 26 C 0.129 3.871 27 C -0.104 4.104 28 H 0.080 0.920 29 C -0.140 4.140 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.415 0.585 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 20.193 20.672 31.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.030 3.970 4 C -0.197 4.197 5 C -0.147 4.147 6 C -0.112 4.112 7 N -0.178 5.178 8 C -0.044 4.044 9 C -0.119 4.119 10 C 0.310 3.690 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.064 3.936 14 H 0.079 0.921 15 C -0.167 4.167 16 C 0.022 3.978 17 N -0.343 5.343 18 C -0.378 4.378 19 H 0.073 0.927 20 C -0.225 4.225 21 N -0.600 5.600 22 Si 0.769 3.231 23 H -0.194 1.194 24 H -0.239 1.239 25 H -0.194 1.194 26 C 0.004 3.996 27 C -0.124 4.124 28 H 0.099 0.901 29 C -0.198 4.198 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.197 0.803 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.252 0.748 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.331 20.364 19.958 30.683 hybrid contribution -0.322 -0.112 -0.688 0.767 sum -11.653 20.252 19.271 30.286 Atomic orbital electron populations 1.23384 0.76286 1.05754 1.02324 1.86070 1.23534 1.25880 1.88215 1.20020 0.93175 0.86213 0.97621 1.22068 1.02136 0.91717 1.03756 1.22373 0.95356 0.99441 0.97521 1.23114 0.92650 0.96474 0.98960 1.67407 1.41231 0.98337 1.10799 1.20142 0.88683 0.93727 1.01861 1.20453 1.02785 0.94830 0.93808 1.20794 0.76948 0.79744 0.91509 1.90682 1.52514 1.55326 1.47602 1.45928 1.54470 1.26972 1.08630 1.20616 0.93980 0.96076 0.82934 0.92059 1.22190 0.97857 0.99439 0.97204 1.20996 0.87070 0.95107 0.94665 1.44515 1.04566 1.17643 1.67556 1.18868 0.98812 0.89907 1.30178 0.92714 1.25839 1.00016 0.97195 0.99474 1.69951 1.25844 1.15701 1.48475 0.86015 0.79595 0.80210 0.77308 1.19415 1.23881 1.19376 1.21421 0.90012 0.95239 0.92919 1.21779 0.94758 0.98664 0.97234 0.90132 1.21770 0.97004 0.99261 1.01739 0.92276 0.86523 0.90632 0.81696 0.81050 0.80315 0.85258 0.85132 0.74843 0.91604 0.91935 0.92184 0.95753 0.92860 0.92380 0.95660 0.90070 0.92185 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 113.37 1.11 1.30 16 2 O -0.32 -6.51 9.55 -92.49 -0.88 -7.39 16 3 C 0.08 1.68 6.67 22.60 0.15 1.83 16 4 C -0.17 -2.76 9.14 22.56 0.21 -2.55 16 5 C -0.13 -1.83 10.11 22.35 0.23 -1.61 16 6 C 0.05 0.84 11.18 84.69 0.95 1.78 16 7 N -0.47 -11.61 10.27 -183.50 -1.88 -13.49 16 8 C 0.10 2.32 5.29 42.67 0.23 2.54 16 9 C -0.08 -1.63 5.77 29.10 0.17 -1.46 16 10 C 0.52 14.50 7.79 87.66 0.68 15.18 16 11 O -0.58 -21.66 15.70 -3.04 -0.05 -21.71 16 12 N -0.71 -17.57 4.36 -442.41 -1.93 -19.50 16 13 C 0.17 5.40 1.88 45.02 0.08 5.48 16 14 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 15 C -0.13 -4.39 5.65 30.67 0.17 -4.21 16 16 C 0.15 6.09 6.52 86.36 0.56 6.65 16 17 N -0.62 -29.80 2.77 -699.10 -1.94 -31.74 16 18 C -0.25 -14.23 10.03 84.03 0.84 -13.39 16 19 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 20 C -0.03 -1.78 5.23 84.86 0.44 -1.34 16 21 N -0.95 -60.03 13.97 21.65 0.30 -59.73 16 22 Si 0.94 47.15 24.35 68.60 1.67 48.82 16 23 H -0.27 -12.46 6.62 99.48 0.66 -11.80 16 24 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 25 H -0.27 -13.28 6.64 99.48 0.66 -12.62 16 26 C 0.13 5.54 3.49 86.36 0.30 5.84 16 27 C -0.10 -3.40 2.46 -10.71 -0.03 -3.42 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 29 C -0.14 -3.69 9.03 71.99 0.65 -3.04 16 30 H 0.06 0.63 7.69 -2.39 -0.02 0.61 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.53 7.71 -2.39 -0.02 0.51 16 33 H 0.17 1.61 6.45 -2.91 -0.02 1.59 16 34 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.13 2.13 7.53 -2.39 -0.02 2.11 16 38 H 0.41 7.49 8.31 -92.71 -0.77 6.72 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 42 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.06 2.70 4.50 -2.39 -0.01 2.69 16 45 H 0.03 1.10 7.08 -2.39 -0.02 1.08 16 46 H 0.08 1.67 7.36 -2.39 -0.02 1.65 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -79.62 381.13 2.15 -77.47 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.10 Total: 17.67 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.75 Total: 9.60 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.45 Total: -124.46 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.93 Total: -29.10 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -79.62 2.15 -77.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942579814.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.939 kcal (2) G-P(sol) polarization free energy of solvation -79.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds