Wall clock time and date at job start Tue Mar 31 2020 17:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00114 * 2 1 4 4 C 1.39141 * 120.47690 * 0.02562 * 3 2 1 5 5 C 1.38529 * 118.38072 * 180.29590 * 4 3 2 6 6 C 1.38259 * 119.21978 * 359.43286 * 5 4 3 7 7 N 1.31850 * 120.88255 * 0.58166 * 6 5 4 8 8 C 1.31845 * 121.78315 * 359.71657 * 7 6 5 9 9 C 1.50694 * 119.65724 * 180.02562 * 8 7 6 10 10 C 1.50711 * 109.47174 * 269.97628 * 9 8 7 11 11 O 1.21277 * 119.99451 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99937 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.46188 * 34.99416 * 13 12 10 15 15 C 1.53046 * 109.45930 * 275.02124 * 13 12 10 16 16 C 1.53168 * 109.32510 * 301.36011 * 15 13 12 17 17 N 1.46929 * 108.76775 * 305.35223 * 16 15 13 18 18 C 1.36937 * 120.62814 * 233.58421 * 17 16 15 19 19 H 1.08000 * 119.99770 * 27.70826 * 18 17 16 20 20 C 1.38809 * 119.99689 * 207.69634 * 18 17 16 21 21 N 1.31616 * 120.00407 * 17.36455 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 197.36174 * 20 18 17 23 23 H 1.48492 * 109.46992 * 90.00397 * 22 20 18 24 24 H 1.48502 * 109.47002 * 210.00703 * 22 20 18 25 25 H 1.48503 * 109.47020 * 330.00150 * 22 20 18 26 26 C 1.46924 * 118.73560 * 53.61643 * 17 16 15 27 27 C 1.53041 * 109.45821 * 154.96953 * 13 12 10 28 28 H 1.09000 * 109.49505 * 178.60537 * 27 13 12 29 29 C 1.53002 * 109.50003 * 298.66627 * 27 13 12 30 30 H 1.09002 * 109.47257 * 299.99351 * 1 2 3 31 31 H 1.08995 * 109.47247 * 60.00115 * 1 2 3 32 32 H 1.09008 * 109.47122 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.80723 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.39167 * 179.71939 * 5 4 3 35 35 H 1.08001 * 119.55907 * 180.32045 * 6 5 4 36 36 H 1.08998 * 109.47669 * 29.97320 * 9 8 7 37 37 H 1.09000 * 109.46849 * 149.97893 * 9 8 7 38 38 H 0.97001 * 119.99738 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.49678 * 61.29293 * 15 13 12 40 40 H 1.08995 * 109.49611 * 181.39367 * 15 13 12 41 41 H 1.08999 * 109.58749 * 185.56863 * 16 15 13 42 42 H 1.09003 * 109.71052 * 65.21186 * 16 15 13 43 43 H 0.96999 * 120.00001 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.58045 * 186.60096 * 26 17 16 45 45 H 1.08995 * 109.58957 * 66.17743 * 26 17 16 46 46 H 1.09005 * 109.46631 * 60.00183 * 29 27 13 47 47 H 1.08993 * 109.47245 * 180.02562 * 29 27 13 48 48 H 1.09000 * 109.47241 * 300.00601 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2979 2.3841 0.0005 5 6 1.9716 3.5946 -0.0058 6 6 3.3541 3.5976 -0.0004 7 7 4.0334 2.4675 -0.0009 8 6 3.4305 1.2949 -0.0009 9 6 4.2542 0.0330 -0.0009 10 6 4.5283 -0.3880 -1.4218 11 8 4.0969 0.2716 -2.3436 12 7 5.2521 -1.4979 -1.6681 13 6 5.5190 -1.9067 -3.0493 14 1 5.6454 -1.0213 -3.6722 15 6 4.3427 -2.7344 -3.5724 16 6 4.1461 -3.9596 -2.6746 17 7 5.4146 -4.6968 -2.5963 18 6 5.4651 -6.0323 -2.8949 19 1 4.7537 -6.4580 -3.5871 20 6 6.4306 -6.8386 -2.3081 21 7 7.0673 -6.4264 -1.2325 22 14 6.8264 -8.5088 -3.0451 23 1 7.9128 -8.3630 -4.0468 24 1 7.2659 -9.4331 -1.9691 25 1 5.6148 -9.0582 -3.7052 26 6 6.6278 -3.9739 -2.1908 27 6 6.7965 -2.7482 -3.0941 28 1 6.9822 -3.0735 -4.1177 29 6 7.9780 -1.9095 -2.6026 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2184 2.3518 0.0014 34 1 1.4233 4.5250 -0.0101 35 1 3.8849 4.5382 0.0000 36 1 5.1983 0.2152 0.5125 37 1 3.7076 -0.7576 0.5132 38 1 5.5968 -2.0256 -0.9308 39 1 3.4375 -2.1272 -3.5621 40 1 4.5515 -3.0597 -4.5915 41 1 3.3750 -4.6032 -3.0983 42 1 3.8470 -3.6398 -1.6764 43 1 7.7418 -6.9901 -0.8222 44 1 7.4942 -4.6270 -2.2953 45 1 6.5324 -3.6531 -1.1535 46 1 7.7924 -1.5854 -1.5785 47 1 8.8876 -2.5091 -2.6350 48 1 8.0957 -1.0363 -3.2443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942579816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:03 Heat of formation + Delta-G solvation = -19.728068 kcal Electronic energy + Delta-G solvation = -29652.090151 eV Core-core repulsion = 25707.925517 eV Total energy + Delta-G solvation = -3944.164634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94247 -39.60213 -38.26431 -37.48941 -34.14211 -33.22612 -32.13332 -31.78849 -31.46896 -29.66109 -28.17052 -27.57239 -25.84998 -25.13645 -23.02595 -22.95107 -21.94721 -20.95176 -20.26968 -18.49636 -18.25445 -17.28598 -17.08388 -16.71804 -16.31394 -15.90895 -15.13445 -14.88427 -14.79488 -14.50194 -14.10264 -14.00949 -13.77595 -13.66340 -13.36774 -13.23716 -13.03626 -12.97067 -12.61059 -12.37631 -12.01580 -11.81311 -11.63473 -11.56107 -11.39095 -11.17140 -10.98370 -10.89040 -10.69799 -10.33761 -10.08876 -9.94554 -9.92091 -9.73641 -9.69888 -9.43347 -9.37225 -8.54839 -8.45463 -8.41177 -6.66926 -5.79831 -3.21271 0.96469 1.14466 3.00541 3.05291 3.37709 3.43524 3.45094 3.45853 3.85391 4.21552 4.45206 4.49495 4.53973 4.78846 4.90601 4.95184 5.06678 5.15348 5.26676 5.30317 5.32961 5.41133 5.44571 5.48779 5.63997 5.73096 5.74503 5.84772 5.91376 5.94026 6.13983 6.22579 6.26534 6.29312 6.40392 6.52318 6.61154 6.62870 6.72272 6.83685 6.98694 7.03229 7.11448 7.32499 7.61666 7.79505 7.88838 7.98511 8.44386 8.64834 9.20783 9.84198 10.40823 11.28471 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002941 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.389327 B = 9518.273572 C =10232.754115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.094 3.906 4 C -0.167 4.167 5 C -0.137 4.137 6 C 0.061 3.939 7 N -0.439 5.439 8 C 0.133 3.867 9 C -0.090 4.090 10 C 0.524 3.476 11 O -0.547 6.547 12 N -0.711 5.711 13 C 0.162 3.838 14 H 0.071 0.929 15 C -0.144 4.144 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.179 3.821 27 C -0.128 4.128 28 H 0.076 0.924 29 C -0.138 4.138 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.403 0.597 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.090 0.910 45 H 0.016 0.984 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 17.486 4.672 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.214 6.214 3 C 0.046 3.954 4 C -0.193 4.193 5 C -0.157 4.157 6 C -0.096 4.096 7 N -0.148 5.148 8 C -0.007 4.007 9 C -0.130 4.130 10 C 0.309 3.691 11 O -0.425 6.425 12 N -0.363 5.363 13 C 0.058 3.942 14 H 0.089 0.911 15 C -0.185 4.185 16 C 0.023 3.977 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.053 3.947 27 C -0.148 4.148 28 H 0.095 0.905 29 C -0.196 4.196 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.239 0.761 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.735 17.654 4.105 20.120 hybrid contribution -0.869 -0.928 -0.020 1.272 sum -9.604 16.726 4.085 19.715 Atomic orbital electron populations 1.23114 0.78198 1.04496 1.01105 1.86147 1.21476 1.25745 1.88074 1.19855 0.93113 0.85251 0.97208 1.21640 1.00648 0.92155 1.04904 1.21937 0.95764 0.98110 0.99856 1.22574 0.91415 0.96286 0.99335 1.67453 1.40023 0.97497 1.09807 1.19961 0.87760 0.93373 0.99650 1.20475 1.01633 0.94418 0.96507 1.20132 0.78085 0.80526 0.90338 1.90659 1.51424 1.54218 1.46210 1.46102 1.54074 1.26377 1.09732 1.20847 0.95160 0.96429 0.81802 0.91118 1.22360 0.97549 0.98130 1.00419 1.20841 0.89530 0.91576 0.95787 1.44066 1.01813 1.05879 1.79719 1.19197 1.15540 0.83902 1.19354 0.91723 1.25005 1.01188 0.97689 0.95729 1.70014 1.28065 1.37803 1.18858 0.86303 0.78386 0.83847 0.78315 1.21480 1.21820 1.20507 1.20786 0.91755 0.89730 0.92453 1.22128 0.92513 0.97655 1.02543 0.90543 1.21713 0.98263 0.98983 1.00666 0.92719 0.92584 0.87741 0.84420 0.84674 0.82569 0.87141 0.86931 0.76075 0.92685 0.91653 0.93119 0.96400 0.93667 0.89177 0.96598 0.93082 0.92694 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.83 101.05 0.99 1.21 16 2 O -0.30 -3.80 9.55 -19.44 -0.19 -3.99 16 3 C 0.09 1.22 6.67 -39.07 -0.26 0.96 16 4 C -0.17 -1.73 9.14 -39.14 -0.36 -2.09 16 5 C -0.14 -1.29 10.11 -39.47 -0.40 -1.69 16 6 C 0.06 0.68 11.18 -17.54 -0.20 0.48 16 7 N -0.44 -6.22 10.27 -9.35 -0.10 -6.32 16 8 C 0.13 1.91 5.29 -82.42 -0.44 1.48 16 9 C -0.09 -1.23 5.77 -29.03 -0.17 -1.40 16 10 C 0.52 8.76 7.79 -10.98 -0.09 8.68 16 11 O -0.55 -10.97 15.70 5.56 0.09 -10.88 16 12 N -0.71 -11.72 3.60 -53.77 -0.19 -11.91 16 13 C 0.16 2.89 2.21 -67.89 -0.15 2.74 16 14 H 0.07 1.31 7.58 -51.93 -0.39 0.92 16 15 C -0.14 -2.71 5.77 -26.62 -0.15 -2.86 16 16 C 0.15 3.14 6.25 -3.72 -0.02 3.11 16 17 N -0.59 -14.33 2.99 -172.34 -0.52 -14.85 16 18 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 19 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 22 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 3.99 4.30 -3.71 -0.02 3.97 16 27 C -0.13 -2.35 2.67 -90.50 -0.24 -2.59 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 C -0.14 -2.20 9.06 37.16 0.34 -1.86 16 30 H 0.05 0.34 7.70 -51.93 -0.40 -0.06 16 31 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 32 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.14 1.03 6.45 -52.49 -0.34 0.69 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.11 1.40 7.52 -51.93 -0.39 1.01 16 38 H 0.40 6.45 6.73 -40.82 -0.27 6.18 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 45 H 0.02 0.36 6.64 -51.93 -0.34 0.02 16 46 H 0.05 0.78 7.54 -51.93 -0.39 0.38 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -32.92 383.61 -8.33 -41.25 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.41 Total: 6.00 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.39 Total: 3.24 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.19 Total: -57.80 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.10 Total: -14.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.92 -8.33 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942579816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.525 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds