Wall clock time and date at job start Tue Mar 31 2020 17:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00114 * 2 1 4 4 C 1.39141 * 120.47690 * 0.02562 * 3 2 1 5 5 C 1.38529 * 118.38072 * 180.29590 * 4 3 2 6 6 C 1.38259 * 119.21978 * 359.43286 * 5 4 3 7 7 N 1.31850 * 120.88255 * 0.58166 * 6 5 4 8 8 C 1.31845 * 121.78315 * 359.71657 * 7 6 5 9 9 C 1.50694 * 119.65724 * 180.02562 * 8 7 6 10 10 C 1.50711 * 109.47174 * 269.97628 * 9 8 7 11 11 O 1.21277 * 119.99451 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99937 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.46188 * 34.99416 * 13 12 10 15 15 C 1.53046 * 109.45930 * 275.02124 * 13 12 10 16 16 C 1.53168 * 109.32510 * 301.36011 * 15 13 12 17 17 N 1.46929 * 108.76775 * 305.35223 * 16 15 13 18 18 C 1.36937 * 120.62814 * 233.58421 * 17 16 15 19 19 H 1.08000 * 119.99770 * 27.70826 * 18 17 16 20 20 C 1.38809 * 119.99689 * 207.69634 * 18 17 16 21 21 N 1.31616 * 120.00407 * 17.36455 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 197.36174 * 20 18 17 23 23 H 1.48492 * 109.46992 * 90.00397 * 22 20 18 24 24 H 1.48502 * 109.47002 * 210.00703 * 22 20 18 25 25 H 1.48503 * 109.47020 * 330.00150 * 22 20 18 26 26 C 1.46924 * 118.73560 * 53.61643 * 17 16 15 27 27 C 1.53041 * 109.45821 * 154.96953 * 13 12 10 28 28 H 1.09000 * 109.49505 * 178.60537 * 27 13 12 29 29 C 1.53002 * 109.50003 * 298.66627 * 27 13 12 30 30 H 1.09002 * 109.47257 * 299.99351 * 1 2 3 31 31 H 1.08995 * 109.47247 * 60.00115 * 1 2 3 32 32 H 1.09008 * 109.47122 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.80723 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.39167 * 179.71939 * 5 4 3 35 35 H 1.08001 * 119.55907 * 180.32045 * 6 5 4 36 36 H 1.08998 * 109.47669 * 29.97320 * 9 8 7 37 37 H 1.09000 * 109.46849 * 149.97893 * 9 8 7 38 38 H 0.97001 * 119.99738 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.49678 * 61.29293 * 15 13 12 40 40 H 1.08995 * 109.49611 * 181.39367 * 15 13 12 41 41 H 1.08999 * 109.58749 * 185.56863 * 16 15 13 42 42 H 1.09003 * 109.71052 * 65.21186 * 16 15 13 43 43 H 0.96999 * 120.00001 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.58045 * 186.60096 * 26 17 16 45 45 H 1.08995 * 109.58957 * 66.17743 * 26 17 16 46 46 H 1.09005 * 109.46631 * 60.00183 * 29 27 13 47 47 H 1.08993 * 109.47245 * 180.02562 * 29 27 13 48 48 H 1.09000 * 109.47241 * 300.00601 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2979 2.3841 0.0005 5 6 1.9716 3.5946 -0.0058 6 6 3.3541 3.5976 -0.0004 7 7 4.0334 2.4675 -0.0009 8 6 3.4305 1.2949 -0.0009 9 6 4.2542 0.0330 -0.0009 10 6 4.5283 -0.3880 -1.4218 11 8 4.0969 0.2716 -2.3436 12 7 5.2521 -1.4979 -1.6681 13 6 5.5190 -1.9067 -3.0493 14 1 5.6454 -1.0213 -3.6722 15 6 4.3427 -2.7344 -3.5724 16 6 4.1461 -3.9596 -2.6746 17 7 5.4146 -4.6968 -2.5963 18 6 5.4651 -6.0323 -2.8949 19 1 4.7537 -6.4580 -3.5871 20 6 6.4306 -6.8386 -2.3081 21 7 7.0673 -6.4264 -1.2325 22 14 6.8264 -8.5088 -3.0451 23 1 7.9128 -8.3630 -4.0468 24 1 7.2659 -9.4331 -1.9691 25 1 5.6148 -9.0582 -3.7052 26 6 6.6278 -3.9739 -2.1908 27 6 6.7965 -2.7482 -3.0941 28 1 6.9822 -3.0735 -4.1177 29 6 7.9780 -1.9095 -2.6026 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2184 2.3518 0.0014 34 1 1.4233 4.5250 -0.0101 35 1 3.8849 4.5382 0.0000 36 1 5.1983 0.2152 0.5125 37 1 3.7076 -0.7576 0.5132 38 1 5.5968 -2.0256 -0.9308 39 1 3.4375 -2.1272 -3.5621 40 1 4.5515 -3.0597 -4.5915 41 1 3.3750 -4.6032 -3.0983 42 1 3.8470 -3.6398 -1.6764 43 1 7.7418 -6.9901 -0.8222 44 1 7.4942 -4.6270 -2.2953 45 1 6.5324 -3.6531 -1.1535 46 1 7.7924 -1.5854 -1.5785 47 1 8.8876 -2.5091 -2.6350 48 1 8.0957 -1.0363 -3.2443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942579816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:02 Heat of formation + Delta-G solvation = -40.611753 kcal Electronic energy + Delta-G solvation = -29652.995736 eV Core-core repulsion = 25707.925517 eV Total energy + Delta-G solvation = -3945.070219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85087 -40.97198 -39.18426 -38.93440 -35.89358 -34.21300 -33.58758 -33.51043 -32.40708 -31.32002 -29.19167 -28.29059 -27.50439 -26.88359 -24.19758 -23.82334 -23.43127 -22.57327 -21.58437 -20.07799 -19.06904 -18.72886 -18.22362 -18.13183 -17.27162 -16.85146 -16.69308 -16.42445 -16.13026 -15.69176 -15.41728 -15.25230 -15.06746 -14.87533 -14.71237 -14.62513 -14.36974 -14.13209 -14.01653 -13.57157 -13.21080 -13.06245 -12.93806 -12.89080 -12.75348 -12.54033 -12.45836 -12.34116 -12.29620 -12.14843 -11.77984 -11.68422 -11.44098 -11.11652 -10.96481 -10.59247 -10.54531 -10.51972 -9.92242 -9.31025 -8.64345 -7.85095 -5.29009 0.12651 0.32479 1.48181 1.50304 1.57964 1.73303 2.24286 2.29699 2.52958 2.87491 3.29066 3.32512 3.65569 3.68292 3.81377 3.84350 3.99850 4.07958 4.11116 4.20981 4.28787 4.34717 4.36048 4.36650 4.49696 4.50830 4.60239 4.68968 4.70554 4.75546 4.81233 4.89063 4.98250 5.04641 5.07415 5.11107 5.13496 5.18769 5.31368 5.36775 5.53414 5.53709 5.65520 5.68418 5.79192 6.25834 6.41874 6.63935 7.03314 7.18099 7.31713 7.88082 8.39855 9.20526 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002941 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.389327 B = 9518.273572 C =10232.754115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.046 3.954 7 N -0.468 5.468 8 C 0.097 3.903 9 C -0.083 4.083 10 C 0.526 3.474 11 O -0.580 6.580 12 N -0.707 5.707 13 C 0.169 3.831 14 H 0.071 0.929 15 C -0.132 4.132 16 C 0.152 3.848 17 N -0.608 5.608 18 C -0.263 4.263 19 H 0.061 0.939 20 C -0.044 4.044 21 N -0.927 5.927 22 Si 0.962 3.038 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.189 3.811 27 C -0.115 4.115 28 H 0.069 0.931 29 C -0.132 4.132 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.406 0.594 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.017 0.983 43 H 0.250 0.750 44 H 0.057 0.943 45 H 0.010 0.990 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 19.109 4.728 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.029 3.971 4 C -0.195 4.195 5 C -0.145 4.145 6 C -0.111 4.111 7 N -0.178 5.178 8 C -0.042 4.042 9 C -0.123 4.123 10 C 0.313 3.687 11 O -0.460 6.460 12 N -0.358 5.358 13 C 0.064 3.936 14 H 0.089 0.911 15 C -0.172 4.172 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.393 4.393 19 H 0.079 0.921 20 C -0.240 4.240 21 N -0.573 5.573 22 Si 0.791 3.209 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.198 1.198 26 C 0.063 3.937 27 C -0.136 4.136 28 H 0.087 0.913 29 C -0.189 4.189 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.185 0.815 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.243 0.757 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.835 19.276 4.165 22.037 hybrid contribution -0.636 -1.357 -0.023 1.499 sum -10.471 17.918 4.141 21.162 Atomic orbital electron populations 1.23380 0.76257 1.05639 1.02441 1.86099 1.23627 1.26082 1.88218 1.20030 0.93108 0.86276 0.97704 1.22060 1.02128 0.91565 1.03719 1.22385 0.95312 0.99396 0.97427 1.23155 0.92691 0.96388 0.98850 1.67400 1.41281 0.98271 1.10834 1.20025 0.88673 0.93476 1.01995 1.20431 1.02553 0.95026 0.94297 1.20626 0.76998 0.79737 0.91324 1.90631 1.52688 1.55170 1.47535 1.46051 1.54109 1.26499 1.09176 1.20687 0.94320 0.95951 0.82651 0.91098 1.22214 0.98117 0.97081 0.99835 1.20862 0.88273 0.92059 0.96172 1.44288 1.03361 1.05580 1.79846 1.19447 1.15504 0.85278 1.19098 0.92113 1.25666 1.01340 1.00827 0.96156 1.70141 1.28482 1.38831 1.19862 0.85353 0.78137 0.80112 0.77335 1.21334 1.22120 1.19781 1.20600 0.89869 0.90256 0.92934 1.21934 0.94046 0.96420 1.01179 0.91279 1.21652 0.96964 0.99038 1.01288 0.90587 0.91922 0.86854 0.81549 0.80762 0.80068 0.85839 0.86153 0.75741 0.92426 0.91664 0.93542 0.96475 0.94054 0.92467 0.97235 0.92435 0.92593 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.83 113.37 1.11 1.37 16 2 O -0.33 -8.01 9.55 -92.46 -0.88 -8.90 16 3 C 0.08 1.93 6.67 22.60 0.15 2.08 16 4 C -0.17 -3.09 9.14 22.56 0.21 -2.88 16 5 C -0.13 -2.00 10.11 22.34 0.23 -1.77 16 6 C 0.05 0.95 11.18 84.70 0.95 1.89 16 7 N -0.47 -12.96 10.27 -183.50 -1.88 -14.85 16 8 C 0.10 2.77 5.29 42.67 0.23 2.99 16 9 C -0.08 -2.27 5.77 29.10 0.17 -2.10 16 10 C 0.53 17.50 7.79 87.66 0.68 18.18 16 11 O -0.58 -23.20 15.70 -3.02 -0.05 -23.25 16 12 N -0.71 -23.07 3.60 -442.41 -1.59 -24.66 16 13 C 0.17 5.94 2.21 45.02 0.10 6.04 16 14 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 15 C -0.13 -4.92 5.77 30.67 0.18 -4.74 16 16 C 0.15 6.42 6.25 86.35 0.54 6.96 16 17 N -0.61 -29.75 2.99 -699.15 -2.09 -31.84 16 18 C -0.26 -14.29 9.59 84.03 0.81 -13.49 16 19 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 20 C -0.04 -2.40 4.91 84.86 0.42 -1.98 16 21 N -0.93 -52.87 11.19 21.65 0.24 -52.63 16 22 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 C 0.19 8.55 4.30 86.36 0.37 8.92 16 27 C -0.12 -4.21 2.67 -10.71 -0.03 -4.24 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 C -0.13 -4.04 9.06 71.98 0.65 -3.39 16 30 H 0.08 0.76 7.70 -2.39 -0.02 0.74 16 31 H 0.06 0.82 7.70 -2.39 -0.02 0.80 16 32 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.17 1.92 6.45 -2.91 -0.02 1.90 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.12 3.01 7.52 -2.39 -0.02 2.99 16 38 H 0.41 12.93 6.73 -92.71 -0.62 12.30 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 42 H 0.02 0.73 7.75 -2.39 -0.02 0.72 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.06 2.98 6.04 -2.39 -0.01 2.97 16 45 H 0.01 0.45 6.64 -2.39 -0.02 0.43 16 46 H 0.06 1.69 7.54 -2.38 -0.02 1.67 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.61 383.61 2.87 -68.74 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.34 Total: 27.14 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.75 Total: 13.84 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.33 Total: -123.98 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.93 Total: -32.15 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.61 2.87 -68.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942579816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.131 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds