Wall clock time and date at job start Tue Mar 31 2020 17:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99604 * 2 1 4 4 C 1.39139 * 120.47599 * 359.72499 * 3 2 1 5 5 C 1.38538 * 118.37549 * 179.75589 * 4 3 2 6 6 C 1.38256 * 119.21868 * 0.49214 * 5 4 3 7 7 N 1.31842 * 120.88851 * 359.77132 * 6 5 4 8 8 C 1.31842 * 121.78056 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.65971 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47403 * 270.02252 * 9 8 7 11 11 O 1.21284 * 119.99703 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00264 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46380 * 324.99773 * 13 12 10 15 15 C 1.53039 * 109.46132 * 84.97482 * 13 12 10 16 16 C 1.53194 * 109.31211 * 181.38246 * 15 13 12 17 17 N 1.46918 * 108.77749 * 305.36552 * 16 15 13 18 18 C 1.36940 * 120.63134 * 233.58861 * 17 16 15 19 19 H 1.08002 * 120.00374 * 151.82827 * 18 17 16 20 20 C 1.38813 * 119.99759 * 331.82764 * 18 17 16 21 21 N 1.31621 * 120.00169 * 343.08457 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 163.09010 * 20 18 17 23 23 H 1.48501 * 109.47267 * 59.99653 * 22 20 18 24 24 H 1.48497 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46977 * 299.99856 * 22 20 18 26 26 C 1.46933 * 118.74092 * 53.60718 * 17 16 15 27 27 C 1.53040 * 109.45790 * 205.02933 * 13 12 10 28 28 H 1.09003 * 109.49642 * 298.56204 * 27 13 12 29 29 C 1.52996 * 109.50026 * 58.66169 * 27 13 12 30 30 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47074 * 59.99981 * 1 2 3 32 32 H 1.08992 * 109.47130 * 299.99624 * 1 2 3 33 33 H 1.07998 * 120.81466 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.38931 * 180.26881 * 5 4 3 35 35 H 1.07997 * 119.55390 * 179.74460 * 6 5 4 36 36 H 1.09006 * 109.47068 * 30.02011 * 9 8 7 37 37 H 1.08998 * 109.47330 * 150.01848 * 9 8 7 38 38 H 0.97003 * 119.99380 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.49467 * 301.33164 * 15 13 12 40 40 H 1.09003 * 109.49941 * 61.43110 * 15 13 12 41 41 H 1.09002 * 109.58839 * 65.15479 * 16 15 13 42 42 H 1.09004 * 109.58389 * 185.57441 * 16 15 13 43 43 H 0.96996 * 120.00041 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.58230 * 66.17844 * 26 17 16 45 45 H 1.09000 * 109.58330 * 186.46374 * 26 17 16 46 46 H 1.09003 * 109.47167 * 60.00163 * 29 27 13 47 47 H 1.09002 * 109.47383 * 179.97438 * 29 27 13 48 48 H 1.08995 * 109.47251 * 299.99971 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0058 5 6 1.9715 3.5947 -0.0003 6 6 3.3540 3.5977 0.0002 7 7 4.0333 2.4677 0.0001 8 6 3.4305 1.2951 0.0000 9 6 4.2542 0.0332 -0.0006 10 6 4.5287 -0.3868 -1.4216 11 8 4.0982 0.2739 -2.3431 12 7 5.2534 -1.4961 -1.6685 13 6 5.5206 -1.9040 -3.0499 14 1 4.6594 -1.6628 -3.6729 15 6 6.7519 -1.1601 -3.5721 16 6 7.0078 -1.5632 -5.0277 17 7 7.1107 -3.0269 -5.1020 18 6 8.2011 -3.6213 -5.6790 19 1 8.5135 -4.6040 -5.3578 20 6 8.9048 -2.9609 -6.6767 21 7 8.3587 -1.9389 -7.3011 22 14 10.6268 -3.5225 -7.1334 23 1 10.5806 -4.9317 -7.5997 24 1 11.1578 -2.6587 -8.2183 25 1 11.5114 -3.4233 -5.9447 26 6 6.0211 -3.8408 -4.5459 27 6 5.7766 -3.4121 -3.0956 28 1 6.6529 -3.6509 -2.4929 29 6 4.5581 -4.1540 -2.5427 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5137 0.8899 33 1 0.2183 2.3518 -0.0107 34 1 1.4231 4.5251 -0.0002 35 1 3.8847 4.5383 0.0002 36 1 5.1982 0.2152 0.5132 37 1 3.7076 -0.7577 0.5129 38 1 5.5986 -2.0238 -0.9314 39 1 6.5780 -0.0855 -3.5173 40 1 7.6189 -1.4203 -2.9647 41 1 6.1816 -1.2228 -5.6518 42 1 7.9387 -1.1134 -5.3731 43 1 8.8506 -1.4772 -7.9980 44 1 5.1144 -3.6861 -5.1307 45 1 6.3000 -4.8941 -4.5758 46 1 3.6827 -3.9158 -3.1470 47 1 4.7406 -5.2281 -2.5759 48 1 4.3825 -3.8466 -1.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942579817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:06 Heat of formation + Delta-G solvation = -21.193193 kcal Electronic energy + Delta-G solvation = -29143.899088 eV Core-core repulsion = 25199.670921 eV Total energy + Delta-G solvation = -3944.228167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00694 -39.52954 -38.33560 -37.51600 -34.43845 -33.29851 -32.55048 -31.62042 -31.11420 -29.91615 -28.29775 -27.66183 -25.82028 -24.91437 -23.09176 -22.94299 -21.86877 -20.91243 -20.10646 -19.20628 -18.33333 -17.35727 -17.01842 -16.63580 -16.43891 -15.96611 -15.59072 -14.88471 -14.73217 -14.52973 -14.14480 -14.05171 -13.84188 -13.54658 -13.50768 -13.31257 -13.01305 -12.76445 -12.60896 -12.46352 -12.16526 -11.85885 -11.72409 -11.64883 -11.40546 -11.24606 -11.00443 -10.74138 -10.61099 -10.27160 -10.19379 -10.01152 -9.93332 -9.74213 -9.72150 -9.67083 -9.34206 -8.58813 -8.51760 -8.35566 -6.63262 -5.74018 -3.17299 0.91032 1.09076 2.90618 2.96637 3.33325 3.41583 3.47394 3.48319 3.77110 4.13817 4.38663 4.48005 4.52884 4.71854 4.81194 4.88124 4.97467 5.07601 5.16064 5.19010 5.28287 5.32021 5.37564 5.45844 5.56687 5.61564 5.69118 5.78588 5.87894 5.98404 6.05144 6.17457 6.22484 6.31881 6.34438 6.48751 6.52105 6.69579 6.73760 6.86188 6.94137 7.02126 7.04970 7.44050 7.73081 7.83271 7.83586 7.85583 8.49445 8.56008 9.25372 9.88855 10.45875 11.34389 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.002644 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.835101 B =10588.269628 C =11405.439575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.064 3.936 7 N -0.438 5.438 8 C 0.131 3.869 9 C -0.088 4.088 10 C 0.521 3.479 11 O -0.535 6.535 12 N -0.723 5.723 13 C 0.159 3.841 14 H 0.080 0.920 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.155 3.845 27 C -0.114 4.114 28 H 0.071 0.929 29 C -0.141 4.141 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.394 0.606 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.088 0.912 43 H 0.255 0.745 44 H 0.019 0.981 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.821 5.712 19.831 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.044 3.956 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.093 4.093 7 N -0.147 5.147 8 C -0.010 4.010 9 C -0.129 4.129 10 C 0.306 3.694 11 O -0.411 6.411 12 N -0.373 5.373 13 C 0.056 3.944 14 H 0.098 0.902 15 C -0.188 4.188 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.028 3.972 27 C -0.135 4.135 28 H 0.089 0.911 29 C -0.199 4.199 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.228 0.772 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.079 6.114 18.980 25.000 hybrid contribution -0.200 -0.205 0.035 0.289 sum -15.279 5.909 19.016 25.099 Atomic orbital electron populations 1.23107 0.78219 1.04347 1.01263 1.86106 1.21470 1.25924 1.88273 1.19827 0.93068 0.85181 0.97545 1.21641 1.00651 0.92157 1.04772 1.21963 0.95773 0.98172 0.99653 1.22603 0.91427 0.96327 0.98965 1.67457 1.40006 0.97514 1.09681 1.19944 0.87705 0.93431 0.99906 1.20469 1.01548 0.94418 0.96416 1.20172 0.78139 0.80753 0.90381 1.90715 1.51291 1.52961 1.46179 1.46223 1.54483 1.26995 1.09634 1.21012 0.98665 0.93889 0.80858 0.90228 1.22569 0.96318 0.98791 1.01082 1.20748 1.01431 0.83864 0.89147 1.44093 1.18784 1.01003 1.67593 1.19126 1.03344 1.02490 1.13474 0.91727 1.25061 0.99505 0.99055 0.95970 1.70029 1.36139 1.23756 1.24603 0.86374 0.84812 0.77921 0.77665 1.20906 1.21656 1.21051 1.20888 0.91547 0.95181 0.89601 1.21962 0.97603 0.93311 1.00661 0.91077 1.21762 0.98166 0.99872 1.00086 0.87877 0.92496 0.92685 0.84393 0.84561 0.82434 0.87161 0.87211 0.77235 0.92815 0.92682 0.96260 0.89339 0.93547 0.96312 0.92452 0.93003 0.92849 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.83 101.05 0.99 1.17 16 2 O -0.31 -3.39 9.55 -19.46 -0.19 -3.57 16 3 C 0.09 1.11 6.67 -39.07 -0.26 0.85 16 4 C -0.17 -1.63 9.14 -39.14 -0.36 -1.99 16 5 C -0.14 -1.25 10.11 -39.46 -0.40 -1.65 16 6 C 0.06 0.70 11.18 -17.54 -0.20 0.51 16 7 N -0.44 -6.12 10.27 -9.35 -0.10 -6.21 16 8 C 0.13 1.78 5.29 -82.42 -0.44 1.34 16 9 C -0.09 -1.07 5.77 -29.04 -0.17 -1.23 16 10 C 0.52 8.25 7.79 -10.98 -0.09 8.17 16 11 O -0.54 -10.94 15.70 5.55 0.09 -10.86 16 12 N -0.72 -10.55 4.36 -53.77 -0.23 -10.79 16 13 C 0.16 2.87 1.88 -67.89 -0.13 2.74 16 14 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 15 C -0.15 -3.07 5.65 -26.61 -0.15 -3.22 16 16 C 0.17 4.38 5.30 -3.71 -0.02 4.36 16 17 N -0.59 -15.07 2.99 -172.32 -0.52 -15.59 16 18 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.76 11.20 55.49 0.62 -26.14 16 22 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.16 3.25 5.80 -3.71 -0.02 3.23 16 27 C -0.11 -1.94 2.46 -90.50 -0.22 -2.16 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 C -0.14 -1.91 9.03 37.16 0.34 -1.58 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16 32 H 0.05 0.27 7.71 -51.93 -0.40 -0.13 16 33 H 0.14 0.95 6.45 -52.49 -0.34 0.61 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.06 7.52 -51.93 -0.39 0.67 16 38 H 0.39 4.50 8.31 -40.82 -0.34 4.16 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -35.28 387.56 -8.43 -43.71 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.57 Total: 3.35 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.34 Total: 3.34 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.23 Total: -58.73 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.10 Total: -14.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.28 -8.43 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942579817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.516 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds