Wall clock time and date at job start Tue Mar 31 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99604 * 2 1 4 4 C 1.39139 * 120.47599 * 359.72499 * 3 2 1 5 5 C 1.38538 * 118.37549 * 179.75589 * 4 3 2 6 6 C 1.38256 * 119.21868 * 0.49214 * 5 4 3 7 7 N 1.31842 * 120.88851 * 359.77132 * 6 5 4 8 8 C 1.31842 * 121.78056 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.65971 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47403 * 270.02252 * 9 8 7 11 11 O 1.21284 * 119.99703 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00264 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46380 * 324.99773 * 13 12 10 15 15 C 1.53039 * 109.46132 * 84.97482 * 13 12 10 16 16 C 1.53194 * 109.31211 * 181.38246 * 15 13 12 17 17 N 1.46918 * 108.77749 * 305.36552 * 16 15 13 18 18 C 1.36940 * 120.63134 * 233.58861 * 17 16 15 19 19 H 1.08002 * 120.00374 * 151.82827 * 18 17 16 20 20 C 1.38813 * 119.99759 * 331.82764 * 18 17 16 21 21 N 1.31621 * 120.00169 * 343.08457 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 163.09010 * 20 18 17 23 23 H 1.48501 * 109.47267 * 59.99653 * 22 20 18 24 24 H 1.48497 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46977 * 299.99856 * 22 20 18 26 26 C 1.46933 * 118.74092 * 53.60718 * 17 16 15 27 27 C 1.53040 * 109.45790 * 205.02933 * 13 12 10 28 28 H 1.09003 * 109.49642 * 298.56204 * 27 13 12 29 29 C 1.52996 * 109.50026 * 58.66169 * 27 13 12 30 30 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47074 * 59.99981 * 1 2 3 32 32 H 1.08992 * 109.47130 * 299.99624 * 1 2 3 33 33 H 1.07998 * 120.81466 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.38931 * 180.26881 * 5 4 3 35 35 H 1.07997 * 119.55390 * 179.74460 * 6 5 4 36 36 H 1.09006 * 109.47068 * 30.02011 * 9 8 7 37 37 H 1.08998 * 109.47330 * 150.01848 * 9 8 7 38 38 H 0.97003 * 119.99380 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.49467 * 301.33164 * 15 13 12 40 40 H 1.09003 * 109.49941 * 61.43110 * 15 13 12 41 41 H 1.09002 * 109.58839 * 65.15479 * 16 15 13 42 42 H 1.09004 * 109.58389 * 185.57441 * 16 15 13 43 43 H 0.96996 * 120.00041 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.58230 * 66.17844 * 26 17 16 45 45 H 1.09000 * 109.58330 * 186.46374 * 26 17 16 46 46 H 1.09003 * 109.47167 * 60.00163 * 29 27 13 47 47 H 1.09002 * 109.47383 * 179.97438 * 29 27 13 48 48 H 1.08995 * 109.47251 * 299.99971 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0058 5 6 1.9715 3.5947 -0.0003 6 6 3.3540 3.5977 0.0002 7 7 4.0333 2.4677 0.0001 8 6 3.4305 1.2951 0.0000 9 6 4.2542 0.0332 -0.0006 10 6 4.5287 -0.3868 -1.4216 11 8 4.0982 0.2739 -2.3431 12 7 5.2534 -1.4961 -1.6685 13 6 5.5206 -1.9040 -3.0499 14 1 4.6594 -1.6628 -3.6729 15 6 6.7519 -1.1601 -3.5721 16 6 7.0078 -1.5632 -5.0277 17 7 7.1107 -3.0269 -5.1020 18 6 8.2011 -3.6213 -5.6790 19 1 8.5135 -4.6040 -5.3578 20 6 8.9048 -2.9609 -6.6767 21 7 8.3587 -1.9389 -7.3011 22 14 10.6268 -3.5225 -7.1334 23 1 10.5806 -4.9317 -7.5997 24 1 11.1578 -2.6587 -8.2183 25 1 11.5114 -3.4233 -5.9447 26 6 6.0211 -3.8408 -4.5459 27 6 5.7766 -3.4121 -3.0956 28 1 6.6529 -3.6509 -2.4929 29 6 4.5581 -4.1540 -2.5427 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5137 0.8899 33 1 0.2183 2.3518 -0.0107 34 1 1.4231 4.5251 -0.0002 35 1 3.8847 4.5383 0.0002 36 1 5.1982 0.2152 0.5132 37 1 3.7076 -0.7577 0.5129 38 1 5.5986 -2.0238 -0.9314 39 1 6.5780 -0.0855 -3.5173 40 1 7.6189 -1.4203 -2.9647 41 1 6.1816 -1.2228 -5.6518 42 1 7.9387 -1.1134 -5.3731 43 1 8.8506 -1.4772 -7.9980 44 1 5.1144 -3.6861 -5.1307 45 1 6.3000 -4.8941 -4.5758 46 1 3.6827 -3.9158 -3.1470 47 1 4.7406 -5.2281 -2.5759 48 1 4.3825 -3.8466 -1.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942579817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:05 Heat of formation + Delta-G solvation = -45.660639 kcal Electronic energy + Delta-G solvation = -29144.960076 eV Core-core repulsion = 25199.670921 eV Total energy + Delta-G solvation = -3945.289155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84681 -40.85226 -39.20696 -38.98004 -36.17087 -34.32231 -33.99058 -32.93175 -32.46517 -31.59731 -29.27057 -28.29562 -27.41087 -26.69353 -24.26043 -23.84338 -23.20286 -22.63687 -21.45451 -20.76800 -19.06949 -18.75680 -18.14674 -18.01049 -17.56878 -16.90341 -16.72427 -16.56539 -16.05647 -15.61740 -15.49560 -15.31412 -15.05425 -14.86682 -14.68185 -14.58965 -14.40007 -14.09740 -14.03685 -13.60837 -13.17704 -13.09391 -13.01468 -12.85604 -12.71355 -12.56822 -12.34329 -12.33349 -12.30062 -12.08284 -12.03754 -11.66298 -11.56519 -11.28173 -10.95921 -10.60494 -10.56409 -10.55873 -9.95133 -9.32350 -8.71831 -7.87708 -5.34856 0.11088 0.30764 1.46941 1.50268 1.56912 1.72091 2.19307 2.26379 2.51287 2.85688 3.27763 3.31856 3.62347 3.64505 3.76302 3.83059 3.97431 4.04743 4.10174 4.18422 4.28601 4.35424 4.37315 4.38511 4.47915 4.52660 4.60558 4.70737 4.73016 4.74505 4.82088 4.86661 4.92794 5.02925 5.04935 5.11818 5.12317 5.17395 5.30941 5.38739 5.50944 5.51997 5.59692 5.63183 5.68276 6.23419 6.37353 6.65706 7.02292 7.12039 7.35906 7.82955 8.36561 9.19222 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.002644 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.835101 B =10588.269628 C =11405.439575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.079 3.921 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.044 3.956 7 N -0.471 5.471 8 C 0.094 3.906 9 C -0.077 4.077 10 C 0.519 3.481 11 O -0.586 6.586 12 N -0.707 5.707 13 C 0.172 3.828 14 H 0.050 0.950 15 C -0.132 4.132 16 C 0.185 3.815 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.075 0.925 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.272 1.272 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.149 3.851 27 C -0.099 4.099 28 H 0.082 0.918 29 C -0.132 4.132 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.415 0.585 39 H 0.040 0.960 40 H 0.062 0.938 41 H -0.015 1.015 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.007 0.993 45 H 0.067 0.933 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.833 4.724 22.621 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.031 3.969 4 C -0.196 4.196 5 C -0.147 4.147 6 C -0.113 4.113 7 N -0.181 5.181 8 C -0.046 4.046 9 C -0.117 4.117 10 C 0.306 3.694 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.067 3.933 14 H 0.068 0.932 15 C -0.172 4.172 16 C 0.058 3.942 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.092 0.908 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.224 1.224 25 H -0.202 1.202 26 C 0.023 3.977 27 C -0.120 4.120 28 H 0.100 0.900 29 C -0.190 4.190 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.190 0.810 35 H 0.195 0.805 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.003 0.997 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.103 5.070 21.839 27.604 hybrid contribution -0.008 0.149 -0.852 0.864 sum -16.111 5.219 20.987 26.968 Atomic orbital electron populations 1.23399 0.76232 1.05873 1.02290 1.86062 1.23579 1.25713 1.88209 1.19980 0.93042 0.86296 0.97554 1.22071 1.02171 0.91644 1.03719 1.22374 0.95240 0.99549 0.97513 1.23107 0.92759 0.96421 0.99048 1.67405 1.41405 0.98473 1.10816 1.20164 0.88831 0.93692 1.01864 1.20456 1.02717 0.94996 0.93526 1.20891 0.76945 0.79938 0.91583 1.90694 1.53249 1.54491 1.48124 1.45934 1.54182 1.27110 1.08642 1.20592 0.95836 0.94496 0.82371 0.93152 1.22320 0.98175 0.98337 0.98358 1.20430 0.98302 0.84215 0.91220 1.44336 1.19743 1.01209 1.67895 1.19545 1.03971 1.02760 1.13035 0.90783 1.25908 1.03304 0.99469 0.96301 1.70213 1.37553 1.25362 1.25417 0.85287 0.80019 0.77645 0.77173 1.19706 1.22378 1.20205 1.21095 0.89627 0.95178 0.91753 1.21761 0.99874 0.92403 0.97946 0.90000 1.21704 0.95742 1.00455 1.01124 0.86242 0.92433 0.90597 0.81495 0.80974 0.80489 0.85558 0.84588 0.74771 0.94100 0.91911 0.99694 0.92701 0.94183 0.97532 0.91492 0.93818 0.91057 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 113.37 1.11 1.30 16 2 O -0.32 -6.64 9.55 -92.54 -0.88 -7.53 16 3 C 0.08 1.83 6.67 22.60 0.15 1.99 16 4 C -0.17 -3.00 9.14 22.56 0.21 -2.79 16 5 C -0.13 -2.08 10.11 22.35 0.23 -1.86 16 6 C 0.04 0.93 11.18 84.70 0.95 1.88 16 7 N -0.47 -13.11 10.27 -183.51 -1.88 -14.99 16 8 C 0.09 2.51 5.29 42.67 0.23 2.73 16 9 C -0.08 -1.77 5.77 29.10 0.17 -1.60 16 10 C 0.52 16.20 7.79 87.66 0.68 16.88 16 11 O -0.59 -24.58 15.70 -3.04 -0.05 -24.63 16 12 N -0.71 -19.64 4.36 -442.41 -1.93 -21.57 16 13 C 0.17 6.19 1.88 45.02 0.08 6.28 16 14 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 15 C -0.13 -5.65 5.65 30.67 0.17 -5.48 16 16 C 0.19 9.79 5.30 86.36 0.46 10.24 16 17 N -0.61 -31.66 2.99 -699.09 -2.09 -33.75 16 18 C -0.26 -14.70 9.58 84.03 0.81 -13.89 16 19 H 0.07 3.93 7.89 -2.91 -0.02 3.90 16 20 C -0.05 -3.14 4.92 84.86 0.42 -2.73 16 21 N -0.94 -58.12 11.20 21.65 0.24 -57.87 16 22 Si 0.97 45.73 29.59 68.60 2.03 47.76 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.15 6.24 5.80 86.36 0.50 6.74 16 27 C -0.10 -3.20 2.46 -10.72 -0.03 -3.22 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 C -0.13 -3.20 9.03 71.98 0.65 -2.55 16 30 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.64 7.69 -2.38 -0.02 0.62 16 32 H 0.08 0.53 7.71 -2.39 -0.02 0.51 16 33 H 0.17 1.79 6.45 -2.91 -0.02 1.77 16 34 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.14 2.32 7.52 -2.39 -0.02 2.30 16 38 H 0.42 8.21 8.31 -92.71 -0.77 7.44 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 41 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 42 H 0.05 3.25 6.06 -2.39 -0.01 3.23 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 46 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.07 1.44 7.36 -2.39 -0.02 1.42 16 Total: -1.00 -81.42 387.56 2.41 -79.01 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.19 Total: 19.66 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.78 Total: 13.92 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -5.66 Total: -128.19 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.93 Total: -32.16 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.42 2.41 -79.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942579817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.350 kcal (2) G-P(sol) polarization free energy of solvation -81.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds