Wall clock time and date at job start Tue Mar 31 2020 17:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35682 * 117.00112 * 2 1 4 4 C 1.38918 * 119.68465 * 179.72939 * 3 2 1 5 5 C 1.38380 * 119.10946 * 179.75316 * 4 3 2 6 6 C 1.50698 * 120.75385 * 180.24277 * 5 4 3 7 7 C 1.50711 * 109.46960 * 270.27128 * 6 5 4 8 8 O 1.21279 * 119.99422 * 0.02562 * 7 6 5 9 9 N 1.34768 * 119.99973 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99915 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.45518 * 34.99932 * 10 9 7 12 12 C 1.53039 * 109.46051 * 275.02987 * 10 9 7 13 13 C 1.53167 * 109.32497 * 301.35599 * 12 10 9 14 14 N 1.46926 * 108.77070 * 305.35533 * 13 12 10 15 15 C 1.36939 * 120.62862 * 233.58966 * 14 13 12 16 16 H 1.07995 * 120.00615 * 27.69925 * 15 14 13 17 17 C 1.38818 * 119.99527 * 207.69630 * 15 14 13 18 18 N 1.31618 * 120.00212 * 17.35628 * 17 15 14 19 19 Si 1.86804 * 119.99830 * 197.35853 * 17 15 14 20 20 H 1.48501 * 109.46960 * 89.99893 * 19 17 15 21 21 H 1.48500 * 109.46894 * 209.99988 * 19 17 15 22 22 H 1.48498 * 109.47068 * 329.99980 * 19 17 15 23 23 C 1.46928 * 118.73658 * 53.61307 * 14 13 12 24 24 C 1.53041 * 109.45849 * 154.97232 * 10 9 7 25 25 H 1.09002 * 109.49300 * 178.60519 * 24 10 9 26 26 C 1.52999 * 109.49839 * 298.67417 * 24 10 9 27 27 C 1.38824 * 118.48324 * 0.50588 * 5 4 3 28 28 C 1.38041 * 119.29147 * 359.73361 * 27 5 4 29 29 N 1.31961 * 120.83703 * 0.02562 * 28 27 5 30 30 H 1.09000 * 109.47062 * 300.00177 * 1 2 3 31 31 H 1.08998 * 109.46868 * 60.00173 * 1 2 3 32 32 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.44361 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47710 * 30.27105 * 6 5 4 35 35 H 1.09000 * 109.47081 * 150.27414 * 6 5 4 36 36 H 0.97008 * 120.00526 * 0.02562 * 9 7 6 37 37 H 1.08993 * 109.49757 * 61.29223 * 12 10 9 38 38 H 1.09003 * 109.49495 * 181.39433 * 12 10 9 39 39 H 1.09006 * 109.58612 * 185.57088 * 13 12 10 40 40 H 1.08998 * 109.70668 * 65.21506 * 13 12 10 41 41 H 0.96997 * 120.00326 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58178 * 186.60451 * 23 14 13 43 43 H 1.08992 * 109.58539 * 66.17550 * 23 14 13 44 44 H 1.08998 * 109.47206 * 60.00028 * 26 24 10 45 45 H 1.09005 * 109.46702 * 179.97438 * 26 24 10 46 46 H 1.08994 * 109.46935 * 300.00170 * 26 24 10 47 47 H 1.08003 * 120.35257 * 179.75742 * 27 5 4 48 48 H 1.08003 * 119.58552 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0057 5 6 4.0485 2.5132 0.0004 6 6 5.5512 2.6269 0.0008 7 6 6.0517 2.6645 1.4219 8 8 5.2655 2.6045 2.3434 9 7 7.3728 2.7650 1.6685 10 6 7.8593 2.8022 3.0500 11 1 7.2330 2.1635 3.6727 12 6 7.8007 4.2393 3.5726 13 6 8.6541 5.1404 2.6749 14 7 10.0108 4.5817 2.5971 15 6 11.1015 5.3539 2.8960 16 1 11.0067 6.1776 3.5878 17 6 12.3290 5.0776 2.3096 18 7 12.3893 4.3213 1.2341 19 14 13.8953 5.7794 3.0469 20 1 14.4399 4.8285 4.0491 21 1 14.8967 5.9923 1.9712 22 1 13.5944 7.0754 3.7066 23 6 10.1749 3.1789 2.1920 24 6 9.3042 2.2998 3.0953 25 1 9.6750 2.3505 4.1191 26 6 9.3570 0.8517 2.6041 27 6 3.2505 3.6491 0.0004 28 6 1.8771 3.5097 -0.0001 29 7 1.3186 2.3141 0.0001 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 4.0229 0.3695 0.0105 34 1 5.9809 1.7670 -0.5130 35 1 5.8465 3.5418 -0.5127 36 1 8.0016 2.8134 0.9315 37 1 6.7683 4.5886 3.5619 38 1 8.1858 4.2717 4.5919 39 1 8.6959 6.1439 3.0984 40 1 8.2186 5.1829 1.6766 41 1 13.2470 4.1286 0.8242 42 1 11.2202 2.8883 2.2969 43 1 9.8625 3.0592 1.1547 44 1 8.9872 0.8018 1.5800 45 1 10.3864 0.4946 2.6362 46 1 8.7352 0.2275 3.2458 47 1 3.6993 4.6314 0.0003 48 1 1.2517 4.3902 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942840232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:09 Heat of formation + Delta-G solvation = -22.045370 kcal Electronic energy + Delta-G solvation = -29001.107846 eV Core-core repulsion = 25056.842726 eV Total energy + Delta-G solvation = -3944.265120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.84488 -39.84101 -38.21637 -37.50724 -34.26757 -33.83598 -32.24627 -31.84987 -30.87422 -29.84638 -28.51622 -27.22744 -25.93138 -25.20119 -23.59235 -22.69688 -21.91253 -21.03884 -20.39222 -18.61770 -18.01610 -17.27096 -17.10588 -16.76411 -16.11835 -16.07292 -15.40781 -15.03214 -14.89467 -14.55308 -14.31189 -14.02614 -13.81519 -13.67350 -13.34205 -13.28108 -13.14376 -12.91277 -12.60548 -12.40935 -12.13431 -12.01611 -11.69765 -11.47425 -11.37151 -11.25130 -11.06060 -10.97046 -10.75141 -10.40024 -10.17716 -10.01720 -9.99111 -9.81505 -9.80244 -9.49404 -9.42280 -8.66793 -8.62047 -8.50418 -6.73849 -5.85805 -3.27450 1.04308 1.13692 2.82594 2.92190 3.34010 3.40343 3.41687 3.42372 3.77251 4.17088 4.43340 4.44598 4.78053 4.96931 4.99534 5.02389 5.08121 5.10331 5.25880 5.26776 5.30311 5.34817 5.40632 5.44141 5.54267 5.61996 5.64599 5.76678 5.81882 6.04537 6.12646 6.16931 6.19041 6.27583 6.31236 6.43120 6.51476 6.52492 6.62472 6.75156 6.89096 6.98723 7.08827 7.24151 7.53952 7.71960 7.74069 7.81884 8.38268 8.46469 9.14695 9.77847 10.33961 11.22583 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.002393 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.721270 B =11697.301409 C =12030.424719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.318 3.682 4 C -0.175 4.175 5 C 0.019 3.981 6 C -0.109 4.109 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.710 5.710 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.145 4.145 13 C 0.149 3.851 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.178 3.822 24 C -0.128 4.128 25 H 0.077 0.923 26 C -0.138 4.138 27 C -0.194 4.194 28 C 0.137 3.863 29 N -0.544 5.544 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.404 0.596 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.091 0.909 43 H 0.016 0.984 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.137 0.863 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.589 -6.589 -4.581 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.139 3.861 4 C -0.196 4.196 5 C 0.011 3.989 6 C -0.149 4.149 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.090 0.910 12 C -0.185 4.185 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.052 3.948 24 C -0.149 4.149 25 H 0.096 0.904 26 C -0.196 4.196 27 C -0.214 4.214 28 C -0.018 4.018 29 N -0.268 5.268 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.240 0.760 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.034 0.966 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.155 0.845 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.783 -6.999 -4.009 20.441 hybrid contribution 1.833 0.585 0.004 1.924 sum -16.950 -6.414 -4.005 18.560 Atomic orbital electron populations 1.22823 0.77417 1.02750 1.02368 1.86231 1.22773 1.24706 1.88030 1.19722 0.89196 0.84638 0.92520 1.20848 0.91993 0.98946 1.07811 1.19471 0.94645 0.92281 0.92488 1.20749 0.91686 1.06075 0.96403 1.20193 0.82747 0.76655 0.90375 1.90709 1.55248 1.49977 1.46098 1.46158 1.06725 1.73354 1.09940 1.20882 0.94994 0.96837 0.81604 0.90996 1.22371 0.99691 0.95901 1.00575 1.20846 0.86134 0.95135 0.95668 1.44067 1.00534 1.07135 1.79724 1.19198 0.87388 1.12045 1.19450 0.91669 1.25016 0.98743 1.00139 0.95706 1.70008 1.24259 1.41648 1.18864 0.86292 0.83351 0.78816 0.78328 1.21445 1.21791 1.20459 1.20796 0.99288 0.82315 0.92394 1.22135 0.94765 0.95308 1.02655 0.90443 1.21715 1.01273 0.96105 1.00541 1.21855 0.94742 0.99408 1.05400 1.22302 0.92684 0.93536 0.93229 1.67265 1.41010 0.98874 1.19661 0.92371 0.92415 0.88783 0.84338 0.87387 0.87087 0.75989 0.92617 0.91504 0.92993 0.96553 0.93630 0.89115 0.96637 0.93182 0.92622 0.93721 0.84511 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.76 10.48 -18.75 -0.20 -3.95 16 3 C 0.32 4.14 7.49 -17.12 -0.13 4.01 16 4 C -0.18 -2.18 9.75 -39.28 -0.38 -2.56 16 5 C 0.02 0.23 4.41 -104.35 -0.46 -0.23 16 6 C -0.11 -1.15 5.88 -29.03 -0.17 -1.32 16 7 C 0.52 7.39 7.79 -10.98 -0.09 7.31 16 8 O -0.54 -9.77 15.70 5.56 0.09 -9.68 16 9 N -0.71 -10.40 3.60 -53.76 -0.19 -10.60 16 10 C 0.16 2.66 2.21 -67.89 -0.15 2.51 16 11 H 0.07 1.24 7.58 -51.93 -0.39 0.84 16 12 C -0.15 -2.56 5.77 -26.62 -0.15 -2.71 16 13 C 0.15 2.98 6.25 -3.72 -0.02 2.95 16 14 N -0.59 -13.84 2.99 -172.33 -0.52 -14.36 16 15 C -0.25 -6.60 9.59 -15.06 -0.14 -6.74 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 18 N -0.90 -24.82 11.19 55.49 0.62 -24.20 16 19 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.18 3.81 4.30 -3.71 -0.02 3.80 16 24 C -0.13 -2.22 2.67 -90.50 -0.24 -2.46 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 C -0.14 -2.05 9.05 37.16 0.34 -1.71 16 27 C -0.19 -2.14 9.81 -39.44 -0.39 -2.52 16 28 C 0.14 1.49 11.17 -17.57 -0.20 1.30 16 29 N -0.54 -6.86 9.22 -13.33 -0.12 -6.98 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.40 5.73 6.73 -40.82 -0.27 5.46 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 40 H 0.02 0.33 7.74 -51.93 -0.40 -0.07 16 41 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.09 2.25 6.04 -51.93 -0.31 1.93 16 43 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 44 H 0.05 0.70 7.54 -51.93 -0.39 0.30 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 48 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -31.60 387.34 -8.32 -39.92 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.57 Total: 4.98 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.24 Total: 3.00 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.21 Total: -56.13 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.11 Total: -13.63 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.60 -8.32 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.875 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds