Wall clock time and date at job start Tue Mar 31 2020 17:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35682 * 117.00112 * 2 1 4 4 C 1.38918 * 119.68465 * 179.72939 * 3 2 1 5 5 C 1.38380 * 119.10946 * 179.75316 * 4 3 2 6 6 C 1.50698 * 120.75385 * 180.24277 * 5 4 3 7 7 C 1.50711 * 109.46960 * 270.27128 * 6 5 4 8 8 O 1.21279 * 119.99422 * 0.02562 * 7 6 5 9 9 N 1.34768 * 119.99973 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99915 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.45518 * 34.99932 * 10 9 7 12 12 C 1.53039 * 109.46051 * 275.02987 * 10 9 7 13 13 C 1.53167 * 109.32497 * 301.35599 * 12 10 9 14 14 N 1.46926 * 108.77070 * 305.35533 * 13 12 10 15 15 C 1.36939 * 120.62862 * 233.58966 * 14 13 12 16 16 H 1.07995 * 120.00615 * 27.69925 * 15 14 13 17 17 C 1.38818 * 119.99527 * 207.69630 * 15 14 13 18 18 N 1.31618 * 120.00212 * 17.35628 * 17 15 14 19 19 Si 1.86804 * 119.99830 * 197.35853 * 17 15 14 20 20 H 1.48501 * 109.46960 * 89.99893 * 19 17 15 21 21 H 1.48500 * 109.46894 * 209.99988 * 19 17 15 22 22 H 1.48498 * 109.47068 * 329.99980 * 19 17 15 23 23 C 1.46928 * 118.73658 * 53.61307 * 14 13 12 24 24 C 1.53041 * 109.45849 * 154.97232 * 10 9 7 25 25 H 1.09002 * 109.49300 * 178.60519 * 24 10 9 26 26 C 1.52999 * 109.49839 * 298.67417 * 24 10 9 27 27 C 1.38824 * 118.48324 * 0.50588 * 5 4 3 28 28 C 1.38041 * 119.29147 * 359.73361 * 27 5 4 29 29 N 1.31961 * 120.83703 * 0.02562 * 28 27 5 30 30 H 1.09000 * 109.47062 * 300.00177 * 1 2 3 31 31 H 1.08998 * 109.46868 * 60.00173 * 1 2 3 32 32 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.44361 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47710 * 30.27105 * 6 5 4 35 35 H 1.09000 * 109.47081 * 150.27414 * 6 5 4 36 36 H 0.97008 * 120.00526 * 0.02562 * 9 7 6 37 37 H 1.08993 * 109.49757 * 61.29223 * 12 10 9 38 38 H 1.09003 * 109.49495 * 181.39433 * 12 10 9 39 39 H 1.09006 * 109.58612 * 185.57088 * 13 12 10 40 40 H 1.08998 * 109.70668 * 65.21506 * 13 12 10 41 41 H 0.96997 * 120.00326 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58178 * 186.60451 * 23 14 13 43 43 H 1.08992 * 109.58539 * 66.17550 * 23 14 13 44 44 H 1.08998 * 109.47206 * 60.00028 * 26 24 10 45 45 H 1.09005 * 109.46702 * 179.97438 * 26 24 10 46 46 H 1.08994 * 109.46935 * 300.00170 * 26 24 10 47 47 H 1.08003 * 120.35257 * 179.75742 * 27 5 4 48 48 H 1.08003 * 119.58552 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0057 5 6 4.0485 2.5132 0.0004 6 6 5.5512 2.6269 0.0008 7 6 6.0517 2.6645 1.4219 8 8 5.2655 2.6045 2.3434 9 7 7.3728 2.7650 1.6685 10 6 7.8593 2.8022 3.0500 11 1 7.2330 2.1635 3.6727 12 6 7.8007 4.2393 3.5726 13 6 8.6541 5.1404 2.6749 14 7 10.0108 4.5817 2.5971 15 6 11.1015 5.3539 2.8960 16 1 11.0067 6.1776 3.5878 17 6 12.3290 5.0776 2.3096 18 7 12.3893 4.3213 1.2341 19 14 13.8953 5.7794 3.0469 20 1 14.4399 4.8285 4.0491 21 1 14.8967 5.9923 1.9712 22 1 13.5944 7.0754 3.7066 23 6 10.1749 3.1789 2.1920 24 6 9.3042 2.2998 3.0953 25 1 9.6750 2.3505 4.1191 26 6 9.3570 0.8517 2.6041 27 6 3.2505 3.6491 0.0004 28 6 1.8771 3.5097 -0.0001 29 7 1.3186 2.3141 0.0001 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 4.0229 0.3695 0.0105 34 1 5.9809 1.7670 -0.5130 35 1 5.8465 3.5418 -0.5127 36 1 8.0016 2.8134 0.9315 37 1 6.7683 4.5886 3.5619 38 1 8.1858 4.2717 4.5919 39 1 8.6959 6.1439 3.0984 40 1 8.2186 5.1829 1.6766 41 1 13.2470 4.1286 0.8242 42 1 11.2202 2.8883 2.2969 43 1 9.8625 3.0592 1.1547 44 1 8.9872 0.8018 1.5800 45 1 10.3864 0.4946 2.6362 46 1 8.7352 0.2275 3.2458 47 1 3.6993 4.6314 0.0003 48 1 1.2517 4.3902 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942840232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:08 Heat of formation + Delta-G solvation = -42.297667 kcal Electronic energy + Delta-G solvation = -29001.986051 eV Core-core repulsion = 25056.842726 eV Total energy + Delta-G solvation = -3945.143325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74711 -41.05452 -39.33245 -38.66439 -35.90327 -34.76578 -33.65863 -33.50296 -31.71772 -31.41001 -29.52840 -27.99401 -27.49541 -26.85295 -24.45734 -24.03982 -23.18220 -22.54238 -21.54102 -20.07034 -18.98704 -18.63214 -18.17129 -18.07442 -16.95890 -16.94821 -16.80118 -16.55726 -16.18036 -15.71022 -15.53615 -15.27606 -15.10864 -14.98895 -14.65886 -14.60119 -14.36900 -14.13250 -13.71863 -13.55915 -13.25232 -13.06830 -12.92744 -12.84494 -12.74980 -12.54276 -12.47642 -12.44224 -12.15510 -12.14247 -11.77366 -11.67425 -11.43361 -11.10785 -11.06571 -10.67407 -10.52508 -10.48582 -9.91896 -9.47281 -8.63643 -7.85508 -5.28703 0.18329 0.26131 1.47856 1.50504 1.57592 1.71908 2.12062 2.32993 2.52846 2.84958 3.29012 3.36432 3.60382 3.69358 3.82823 3.98562 4.04086 4.11539 4.16538 4.20896 4.22488 4.37434 4.43025 4.45326 4.55137 4.60263 4.61342 4.70773 4.75507 4.76994 4.81161 4.88527 4.94579 4.99054 5.06244 5.12952 5.19774 5.33015 5.34775 5.38124 5.48170 5.55061 5.65815 5.68823 5.80364 6.25656 6.42187 6.65137 6.86059 7.18591 7.32260 7.89028 8.39522 9.19858 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.002393 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.721270 B =11697.301409 C =12030.424719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.299 3.701 4 C -0.190 4.190 5 C 0.009 3.991 6 C -0.101 4.101 7 C 0.518 3.482 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.169 3.831 11 H 0.072 0.928 12 C -0.134 4.134 13 C 0.151 3.849 14 N -0.608 5.608 15 C -0.261 4.261 16 H 0.060 0.940 17 C -0.044 4.044 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.274 1.274 23 C 0.187 3.813 24 C -0.116 4.116 25 H 0.065 0.935 26 C -0.132 4.132 27 C -0.199 4.199 28 C 0.131 3.869 29 N -0.558 5.558 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.408 0.592 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.023 0.977 41 H 0.250 0.750 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.156 0.844 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.410 -6.708 -4.980 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.120 3.880 4 C -0.210 4.210 5 C 0.001 3.999 6 C -0.140 4.140 7 C 0.305 3.695 8 O -0.459 6.459 9 N -0.358 5.358 10 C 0.064 3.936 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.025 3.975 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.078 0.922 17 C -0.240 4.240 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.199 1.199 23 C 0.062 3.938 24 C -0.136 4.136 25 H 0.084 0.916 26 C -0.190 4.190 27 C -0.219 4.219 28 C -0.024 4.024 29 N -0.282 5.282 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.173 0.827 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -19.623 -7.122 -4.415 21.337 hybrid contribution 2.009 0.659 0.137 2.119 sum -17.614 -6.463 -4.278 19.244 Atomic orbital electron populations 1.23025 0.75936 1.04530 1.02139 1.86207 1.24354 1.24629 1.88048 1.19984 0.89737 0.85060 0.93178 1.21050 0.92080 0.99652 1.08245 1.19680 0.95362 0.92329 0.92489 1.20777 0.90906 1.08426 0.93926 1.20761 0.81947 0.75177 0.91573 1.90700 1.55976 1.51570 1.47688 1.46085 1.07199 1.73405 1.09121 1.20665 0.94214 0.95871 0.82840 0.90979 1.22230 0.99240 0.96185 0.99756 1.20891 0.84979 0.95246 0.96382 1.44289 1.01095 1.07892 1.79876 1.19424 0.88624 1.12089 1.19023 0.92234 1.25635 1.01084 1.01034 0.96217 1.70123 1.24394 1.42866 1.19834 0.85391 0.80117 0.78310 0.77352 1.21442 1.22152 1.19857 1.20622 0.97985 0.82101 0.93111 1.21930 0.94426 0.96245 1.01037 0.91636 1.21654 1.01623 0.94245 1.01432 1.22158 0.94914 1.00100 1.04722 1.22847 0.93334 0.93906 0.92303 1.67306 1.41447 0.99363 1.20107 0.92924 0.92261 0.86054 0.83716 0.84857 0.84781 0.75501 0.92032 0.92001 0.93691 0.95942 0.94073 0.92684 0.96830 0.92067 0.92862 0.92129 0.82674 0.79581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -7.72 10.48 -90.01 -0.94 -8.66 16 3 C 0.30 7.61 7.49 84.79 0.63 8.24 16 4 C -0.19 -4.51 9.75 22.47 0.22 -4.29 16 5 C 0.01 0.21 4.41 -19.69 -0.09 0.12 16 6 C -0.10 -1.85 5.88 29.10 0.17 -1.68 16 7 C 0.52 13.73 7.79 87.66 0.68 14.41 16 8 O -0.58 -19.92 15.70 -3.03 -0.05 -19.97 16 9 N -0.71 -19.27 3.60 -442.40 -1.59 -20.86 16 10 C 0.17 5.34 2.21 45.02 0.10 5.44 16 11 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 12 C -0.13 -4.58 5.77 30.66 0.18 -4.40 16 13 C 0.15 5.93 6.25 86.35 0.54 6.47 16 14 N -0.61 -28.39 2.99 -699.13 -2.09 -30.49 16 15 C -0.26 -13.78 9.59 84.03 0.81 -12.97 16 16 H 0.06 3.14 7.89 -2.91 -0.02 3.12 16 17 C -0.04 -2.33 4.91 84.86 0.42 -1.91 16 18 N -0.93 -51.36 11.19 21.65 0.24 -51.11 16 19 Si 0.96 43.50 29.59 68.60 2.03 45.53 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 C 0.19 8.00 4.30 86.36 0.37 8.37 16 24 C -0.12 -3.92 2.67 -10.71 -0.03 -3.95 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 C -0.13 -3.67 9.05 71.98 0.65 -3.02 16 27 C -0.20 -3.98 9.81 22.36 0.22 -3.76 16 28 C 0.13 2.63 11.17 84.63 0.95 3.57 16 29 N -0.56 -13.56 9.22 -308.95 -2.85 -16.40 16 30 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 31 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.13 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.13 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.41 10.69 6.73 -92.70 -0.62 10.06 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.80 7.93 -2.38 -0.02 1.78 16 40 H 0.02 0.87 7.74 -2.39 -0.02 0.85 16 41 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 42 H 0.05 2.76 6.04 -2.39 -0.01 2.75 16 43 H 0.01 0.59 6.64 -2.39 -0.02 0.57 16 44 H 0.06 1.57 7.54 -2.39 -0.02 1.55 16 45 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 48 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -68.04 387.34 2.08 -65.97 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.33 Total: 23.55 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 7.00 Total: 12.45 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -6.29 Total: -118.87 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.99 Total: -28.63 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -68.04 2.08 -65.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.669 kcal (2) G-P(sol) polarization free energy of solvation -68.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds