Wall clock time and date at job start Tue Mar 31 2020 17:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35673 * 117.00429 * 2 1 4 4 C 1.38917 * 119.69107 * 180.29776 * 3 2 1 5 5 C 1.38379 * 119.11453 * 180.24266 * 4 3 2 6 6 C 1.50695 * 120.75633 * 179.72745 * 5 4 3 7 7 C 1.50697 * 109.47743 * 269.72604 * 6 5 4 8 8 O 1.21290 * 119.99602 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00636 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00468 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.45834 * 325.00168 * 10 9 7 12 12 C 1.53039 * 109.45907 * 84.97070 * 10 9 7 13 13 C 1.53160 * 109.32741 * 58.64326 * 12 10 9 14 14 N 1.46923 * 108.76946 * 54.64450 * 13 12 10 15 15 C 1.36931 * 120.63391 * 126.41171 * 14 13 12 16 16 H 1.08004 * 120.00020 * 331.82633 * 15 14 13 17 17 C 1.38819 * 120.00166 * 151.83039 * 15 14 13 18 18 N 1.31614 * 119.99851 * 343.06926 * 17 15 14 19 19 Si 1.86806 * 119.99745 * 163.06971 * 17 15 14 20 20 H 1.48495 * 109.47155 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46583 * 119.99983 * 19 17 15 22 22 H 1.48492 * 109.46838 * 239.99487 * 19 17 15 23 23 C 1.46933 * 118.73860 * 306.39213 * 14 13 12 24 24 C 1.53035 * 109.46062 * 205.02874 * 10 9 7 25 25 H 1.09002 * 109.49427 * 181.39535 * 24 10 9 26 26 C 1.52994 * 109.50183 * 61.29770 * 24 10 9 27 27 C 1.38829 * 118.48376 * 359.46180 * 5 4 3 28 28 C 1.38047 * 119.28714 * 0.27168 * 27 5 4 29 29 N 1.31963 * 120.83577 * 0.02562 * 28 27 5 30 30 H 1.08997 * 109.47150 * 300.00607 * 1 2 3 31 31 H 1.08997 * 109.47008 * 60.00502 * 1 2 3 32 32 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.44389 * 359.97438 * 4 3 2 34 34 H 1.09006 * 109.47056 * 149.72588 * 6 5 4 35 35 H 1.09000 * 109.47353 * 29.72708 * 6 5 4 36 36 H 0.97000 * 119.99234 * 359.72652 * 9 7 6 37 37 H 1.09005 * 109.49818 * 178.61123 * 12 10 9 38 38 H 1.09004 * 109.49873 * 298.70350 * 12 10 9 39 39 H 1.08994 * 109.59315 * 294.85789 * 13 12 10 40 40 H 1.09002 * 109.71103 * 174.49762 * 13 12 10 41 41 H 0.97000 * 119.99763 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.58454 * 293.82074 * 23 14 13 43 43 H 1.08995 * 109.70278 * 173.46124 * 23 14 13 44 44 H 1.09000 * 109.47405 * 59.99305 * 26 24 10 45 45 H 1.08998 * 109.47357 * 179.97438 * 26 24 10 46 46 H 1.09004 * 109.46890 * 299.99982 * 26 24 10 47 47 H 1.07994 * 120.35448 * 180.24934 * 27 5 4 48 48 H 1.07999 * 119.58009 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 -0.0063 5 6 4.0486 2.5131 -0.0011 6 6 5.5512 2.6268 -0.0014 7 6 6.0526 2.6651 1.4192 8 8 5.2668 2.6064 2.3413 9 7 7.3739 2.7657 1.6652 10 6 7.8611 2.8035 3.0462 11 1 7.1459 3.3407 3.6690 12 6 8.0208 1.3744 3.5698 13 6 8.9999 0.6120 2.6721 14 7 10.2565 1.3693 2.5931 15 6 11.4515 0.7712 2.8917 16 1 11.4838 -0.0520 3.5901 17 6 12.6216 1.2229 2.2969 18 7 12.5636 1.9782 1.2205 19 14 14.2785 0.7589 3.0241 20 1 14.0719 -0.0914 4.2238 21 1 15.0687 0.0078 2.0158 22 1 15.0121 1.9909 3.4102 23 6 10.2065 2.7805 2.1871 24 6 9.2134 3.5186 3.0903 25 1 9.5882 3.5252 4.1139 26 6 9.0468 4.9574 2.5975 27 6 3.2506 3.6491 -0.0012 28 6 1.8771 3.5096 -0.0007 29 7 1.3187 2.3140 0.0003 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0229 0.3695 -0.0107 34 1 5.8463 3.5416 -0.5156 35 1 5.9806 1.7667 -0.5151 36 1 8.0024 2.8094 0.9277 37 1 8.4067 1.4013 4.5889 38 1 7.0529 0.8731 3.5601 39 1 8.5741 0.5056 1.6745 40 1 9.1937 -0.3743 3.0938 41 1 13.3812 2.2935 0.8047 42 1 9.8790 2.8509 1.1498 43 1 11.1953 3.2275 2.2892 44 1 8.3379 5.4813 3.2387 45 1 10.0101 5.4663 2.6295 46 1 8.6733 4.9497 1.5734 47 1 3.6994 4.6314 -0.0013 48 1 1.2518 4.3902 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942840234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:15 Heat of formation + Delta-G solvation = -22.089190 kcal Electronic energy + Delta-G solvation = -29029.462710 eV Core-core repulsion = 25085.195689 eV Total energy + Delta-G solvation = -3944.267020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84044 -39.83847 -38.20900 -37.50312 -34.26306 -33.83481 -32.24830 -31.84431 -30.87161 -29.84348 -28.51528 -27.21405 -25.93108 -25.19877 -23.59332 -22.68991 -21.91261 -21.03602 -20.39145 -18.61583 -18.00978 -17.26708 -17.10993 -16.76196 -16.10096 -16.06583 -15.34111 -15.14386 -14.90910 -14.41076 -14.37370 -14.02183 -13.81699 -13.67118 -13.33986 -13.28116 -13.13113 -12.90702 -12.65396 -12.36437 -12.13228 -12.01600 -11.69633 -11.47319 -11.36186 -11.24895 -11.05710 -10.96938 -10.75513 -10.38756 -10.17401 -10.01764 -9.98728 -9.81422 -9.79861 -9.48962 -9.42067 -8.66630 -8.61679 -8.50633 -6.72482 -5.85633 -3.27492 1.04747 1.13445 2.82721 2.93432 3.33145 3.40494 3.41931 3.43984 3.77384 4.17060 4.42618 4.44889 4.78919 4.97566 4.98459 5.02683 5.09320 5.11888 5.25414 5.27088 5.29559 5.35917 5.40753 5.45738 5.55161 5.62456 5.64367 5.75908 5.81872 6.04493 6.12372 6.17069 6.18081 6.28388 6.31385 6.43116 6.51984 6.52707 6.62276 6.76344 6.89632 6.99101 7.10128 7.24072 7.54115 7.72095 7.74745 7.81914 8.38842 8.46491 9.15178 9.78195 10.34602 11.22849 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.002498 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.291130 B =11208.255536 C =11771.507368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.319 3.681 4 C -0.175 4.175 5 C 0.020 3.980 6 C -0.109 4.109 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.710 5.710 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.179 3.821 24 C -0.128 4.128 25 H 0.077 0.923 26 C -0.138 4.138 27 C -0.196 4.196 28 C 0.137 3.863 29 N -0.544 5.544 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.404 0.596 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.136 0.864 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 4.056 -4.538 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.195 4.195 5 C 0.012 3.988 6 C -0.149 4.149 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.090 0.910 12 C -0.186 4.186 13 C 0.022 3.978 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.052 3.948 24 C -0.149 4.149 25 H 0.096 0.904 26 C -0.196 4.196 27 C -0.216 4.216 28 C -0.018 4.018 29 N -0.269 5.269 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.158 0.842 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.240 0.760 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.153 0.847 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.606 3.697 -3.956 20.341 hybrid contribution 1.883 -0.001 -0.021 1.883 sum -17.724 3.696 -3.978 18.537 Atomic orbital electron populations 1.22826 0.77413 1.02789 1.02331 1.86241 1.22768 1.24660 1.87956 1.19724 0.89202 0.84630 0.92374 1.20885 0.92031 0.99054 1.07577 1.19465 0.94634 0.92281 0.92467 1.20745 0.91705 1.06058 0.96404 1.20196 0.82731 0.76669 0.90376 1.90712 1.55417 1.49863 1.46049 1.46157 1.06650 1.73423 1.09944 1.20876 0.95280 0.96524 0.81605 0.90993 1.22376 0.99587 0.96057 1.00581 1.20844 0.86997 0.94263 0.95677 1.44062 1.01588 1.06078 1.79714 1.19227 0.84097 1.15739 1.18955 0.91676 1.25026 0.98345 1.00531 0.95693 1.70013 1.26805 1.39197 1.18771 0.86240 0.84219 0.77777 0.78653 1.20269 1.21746 1.21557 1.20782 0.97850 0.83732 0.92392 1.22133 0.95617 0.94462 1.02656 0.90436 1.21713 1.01042 0.96329 1.00521 1.21821 0.94744 0.99273 1.05753 1.22287 0.92658 0.93544 0.93321 1.67262 1.41020 0.98869 1.19701 0.92374 0.92432 0.88751 0.84205 0.87269 0.87206 0.75990 0.91502 0.92603 0.96570 0.92958 0.93693 0.96652 0.89175 0.93744 0.92632 0.93180 0.84652 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.86 10.48 -18.72 -0.20 -4.06 16 3 C 0.32 4.24 7.49 -17.12 -0.13 4.11 16 4 C -0.17 -2.23 9.74 -39.28 -0.38 -2.62 16 5 C 0.02 0.23 4.41 -104.35 -0.46 -0.23 16 6 C -0.11 -1.15 5.88 -29.04 -0.17 -1.32 16 7 C 0.52 7.40 7.79 -10.99 -0.09 7.31 16 8 O -0.54 -9.78 15.70 5.55 0.09 -9.69 16 9 N -0.71 -10.41 3.59 -53.77 -0.19 -10.60 16 10 C 0.16 2.67 2.21 -67.89 -0.15 2.52 16 11 H 0.07 1.23 7.58 -51.93 -0.39 0.84 16 12 C -0.15 -2.60 5.77 -26.63 -0.15 -2.75 16 13 C 0.15 3.01 6.26 -3.73 -0.02 2.99 16 14 N -0.59 -13.89 2.99 -172.34 -0.52 -14.41 16 15 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 16 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -24.87 11.19 55.49 0.62 -24.24 16 19 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.18 3.82 4.29 -3.71 -0.02 3.81 16 24 C -0.13 -2.22 2.67 -90.50 -0.24 -2.46 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 C -0.14 -2.02 9.05 37.15 0.34 -1.68 16 27 C -0.20 -2.09 9.81 -39.43 -0.39 -2.47 16 28 C 0.14 1.46 11.18 -17.57 -0.20 1.26 16 29 N -0.54 -6.87 9.22 -13.33 -0.12 -6.99 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.11 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.40 5.74 6.74 -40.82 -0.28 5.46 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.33 7.74 -51.93 -0.40 -0.07 16 40 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.02 0.33 6.64 -51.93 -0.34 -0.01 16 43 H 0.09 2.23 6.07 -51.93 -0.31 1.91 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 47 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -31.74 387.36 -8.32 -40.06 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.57 Total: 4.93 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.24 Total: 3.11 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.21 Total: -56.25 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.11 Total: -13.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.74 -8.32 -40.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.973 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds