Wall clock time and date at job start Tue Mar 31 2020 17:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35673 * 117.00429 * 2 1 4 4 C 1.38917 * 119.69107 * 180.29776 * 3 2 1 5 5 C 1.38379 * 119.11453 * 180.24266 * 4 3 2 6 6 C 1.50695 * 120.75633 * 179.72745 * 5 4 3 7 7 C 1.50697 * 109.47743 * 269.72604 * 6 5 4 8 8 O 1.21290 * 119.99602 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00636 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00468 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.45834 * 325.00168 * 10 9 7 12 12 C 1.53039 * 109.45907 * 84.97070 * 10 9 7 13 13 C 1.53160 * 109.32741 * 58.64326 * 12 10 9 14 14 N 1.46923 * 108.76946 * 54.64450 * 13 12 10 15 15 C 1.36931 * 120.63391 * 126.41171 * 14 13 12 16 16 H 1.08004 * 120.00020 * 331.82633 * 15 14 13 17 17 C 1.38819 * 120.00166 * 151.83039 * 15 14 13 18 18 N 1.31614 * 119.99851 * 343.06926 * 17 15 14 19 19 Si 1.86806 * 119.99745 * 163.06971 * 17 15 14 20 20 H 1.48495 * 109.47155 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46583 * 119.99983 * 19 17 15 22 22 H 1.48492 * 109.46838 * 239.99487 * 19 17 15 23 23 C 1.46933 * 118.73860 * 306.39213 * 14 13 12 24 24 C 1.53035 * 109.46062 * 205.02874 * 10 9 7 25 25 H 1.09002 * 109.49427 * 181.39535 * 24 10 9 26 26 C 1.52994 * 109.50183 * 61.29770 * 24 10 9 27 27 C 1.38829 * 118.48376 * 359.46180 * 5 4 3 28 28 C 1.38047 * 119.28714 * 0.27168 * 27 5 4 29 29 N 1.31963 * 120.83577 * 0.02562 * 28 27 5 30 30 H 1.08997 * 109.47150 * 300.00607 * 1 2 3 31 31 H 1.08997 * 109.47008 * 60.00502 * 1 2 3 32 32 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.44389 * 359.97438 * 4 3 2 34 34 H 1.09006 * 109.47056 * 149.72588 * 6 5 4 35 35 H 1.09000 * 109.47353 * 29.72708 * 6 5 4 36 36 H 0.97000 * 119.99234 * 359.72652 * 9 7 6 37 37 H 1.09005 * 109.49818 * 178.61123 * 12 10 9 38 38 H 1.09004 * 109.49873 * 298.70350 * 12 10 9 39 39 H 1.08994 * 109.59315 * 294.85789 * 13 12 10 40 40 H 1.09002 * 109.71103 * 174.49762 * 13 12 10 41 41 H 0.97000 * 119.99763 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.58454 * 293.82074 * 23 14 13 43 43 H 1.08995 * 109.70278 * 173.46124 * 23 14 13 44 44 H 1.09000 * 109.47405 * 59.99305 * 26 24 10 45 45 H 1.08998 * 109.47357 * 179.97438 * 26 24 10 46 46 H 1.09004 * 109.46890 * 299.99982 * 26 24 10 47 47 H 1.07994 * 120.35448 * 180.24934 * 27 5 4 48 48 H 1.07999 * 119.58009 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 -0.0063 5 6 4.0486 2.5131 -0.0011 6 6 5.5512 2.6268 -0.0014 7 6 6.0526 2.6651 1.4192 8 8 5.2668 2.6064 2.3413 9 7 7.3739 2.7657 1.6652 10 6 7.8611 2.8035 3.0462 11 1 7.1459 3.3407 3.6690 12 6 8.0208 1.3744 3.5698 13 6 8.9999 0.6120 2.6721 14 7 10.2565 1.3693 2.5931 15 6 11.4515 0.7712 2.8917 16 1 11.4838 -0.0520 3.5901 17 6 12.6216 1.2229 2.2969 18 7 12.5636 1.9782 1.2205 19 14 14.2785 0.7589 3.0241 20 1 14.0719 -0.0914 4.2238 21 1 15.0687 0.0078 2.0158 22 1 15.0121 1.9909 3.4102 23 6 10.2065 2.7805 2.1871 24 6 9.2134 3.5186 3.0903 25 1 9.5882 3.5252 4.1139 26 6 9.0468 4.9574 2.5975 27 6 3.2506 3.6491 -0.0012 28 6 1.8771 3.5096 -0.0007 29 7 1.3187 2.3140 0.0003 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0229 0.3695 -0.0107 34 1 5.8463 3.5416 -0.5156 35 1 5.9806 1.7667 -0.5151 36 1 8.0024 2.8094 0.9277 37 1 8.4067 1.4013 4.5889 38 1 7.0529 0.8731 3.5601 39 1 8.5741 0.5056 1.6745 40 1 9.1937 -0.3743 3.0938 41 1 13.3812 2.2935 0.8047 42 1 9.8790 2.8509 1.1498 43 1 11.1953 3.2275 2.2892 44 1 8.3379 5.4813 3.2387 45 1 10.0101 5.4663 2.6295 46 1 8.6733 4.9497 1.5734 47 1 3.6994 4.6314 -0.0013 48 1 1.2518 4.3902 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942840234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:14 Heat of formation + Delta-G solvation = -42.570383 kcal Electronic energy + Delta-G solvation = -29030.350841 eV Core-core repulsion = 25085.195689 eV Total energy + Delta-G solvation = -3945.155151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74646 -41.05649 -39.33577 -38.66744 -35.90608 -34.76526 -33.66186 -33.50446 -31.72155 -31.41306 -29.52904 -27.99911 -27.49086 -26.85818 -24.46300 -24.03496 -23.18860 -22.54747 -21.54023 -20.07454 -18.99279 -18.63898 -18.17088 -18.08433 -16.95923 -16.90894 -16.81538 -16.54546 -16.25387 -15.69715 -15.52181 -15.23383 -15.15253 -14.98836 -14.65349 -14.60685 -14.37446 -14.13520 -13.73052 -13.55210 -13.26332 -13.04116 -12.93169 -12.85662 -12.75370 -12.55087 -12.48085 -12.44667 -12.15208 -12.13611 -11.78501 -11.66834 -11.43796 -11.10606 -11.06764 -10.66890 -10.53726 -10.49128 -9.92151 -9.47029 -8.63441 -7.86266 -5.29909 0.18445 0.26407 1.46221 1.49842 1.58678 1.71562 2.12175 2.33141 2.52243 2.85260 3.28599 3.36535 3.60092 3.68668 3.82858 3.98297 4.05971 4.09559 4.16705 4.20870 4.22788 4.36703 4.42496 4.44570 4.55609 4.60105 4.61018 4.70830 4.74793 4.77343 4.80726 4.88766 4.94524 4.99327 5.05274 5.12421 5.19687 5.33251 5.34822 5.38308 5.49309 5.54722 5.65593 5.68582 5.80415 6.25979 6.41851 6.64962 6.86385 7.18193 7.32096 7.88115 8.39008 9.19289 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.002498 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.291130 B =11208.255536 C =11771.507368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.327 6.327 3 C 0.299 3.701 4 C -0.195 4.195 5 C 0.010 3.990 6 C -0.101 4.101 7 C 0.518 3.482 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.170 3.830 11 H 0.074 0.926 12 C -0.135 4.135 13 C 0.151 3.849 14 N -0.608 5.608 15 C -0.262 4.262 16 H 0.059 0.941 17 C -0.043 4.043 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.187 3.813 24 C -0.116 4.116 25 H 0.066 0.934 26 C -0.131 4.131 27 C -0.196 4.196 28 C 0.131 3.869 29 N -0.558 5.558 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.408 0.592 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.043 0.957 41 H 0.250 0.750 42 H 0.013 0.987 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.162 0.838 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 5.234 -4.935 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.234 6.234 3 C 0.121 3.879 4 C -0.215 4.215 5 C 0.002 3.998 6 C -0.140 4.140 7 C 0.305 3.695 8 O -0.459 6.459 9 N -0.358 5.358 10 C 0.065 3.935 11 H 0.092 0.908 12 C -0.175 4.175 13 C 0.025 3.975 14 N -0.331 5.331 15 C -0.392 4.392 16 H 0.076 0.924 17 C -0.239 4.239 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.216 1.216 23 C 0.062 3.938 24 C -0.136 4.136 25 H 0.084 0.916 26 C -0.189 4.189 27 C -0.216 4.216 28 C -0.024 4.024 29 N -0.282 5.282 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.245 0.755 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.179 0.821 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.502 4.871 -4.361 21.520 hybrid contribution 2.086 -0.392 0.106 2.125 sum -18.416 4.480 -4.255 19.425 Atomic orbital electron populations 1.23025 0.75896 1.04495 1.02192 1.86212 1.24412 1.24771 1.88034 1.19960 0.89661 0.85089 0.93198 1.21060 0.92185 0.99734 1.08540 1.19685 0.95382 0.92309 0.92457 1.20776 0.90885 1.08455 0.93928 1.20765 0.81939 0.75182 0.91574 1.90703 1.56148 1.51450 1.47643 1.46085 1.07111 1.73478 1.09133 1.20661 0.94716 0.95298 0.82847 0.90752 1.22240 0.98725 0.96769 0.99813 1.20875 0.86339 0.93991 0.96287 1.44282 1.01745 1.07206 1.79876 1.19443 0.85551 1.15644 1.18587 0.92364 1.25646 1.01014 1.01074 0.96173 1.70125 1.27165 1.40214 1.19693 0.85333 0.80628 0.77304 0.77910 1.19739 1.22005 1.21582 1.20623 0.97092 0.82963 0.93136 1.21927 0.94768 0.95885 1.01036 0.91603 1.21649 1.01530 0.94205 1.01495 1.22168 0.94774 1.00062 1.04573 1.22903 0.93438 0.93864 0.92179 1.67310 1.41414 0.99376 1.20121 0.92835 0.92172 0.86186 0.84317 0.83935 0.85715 0.75509 0.91922 0.92309 0.96191 0.93820 0.94042 0.96862 0.92680 0.91978 0.92883 0.91967 0.82087 0.79330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.85 16 2 O -0.33 -8.17 10.48 -89.91 -0.94 -9.11 16 3 C 0.30 7.86 7.49 84.79 0.63 8.50 16 4 C -0.19 -4.88 9.74 22.47 0.22 -4.66 16 5 C 0.01 0.21 4.41 -19.69 -0.09 0.13 16 6 C -0.10 -1.86 5.88 29.10 0.17 -1.69 16 7 C 0.52 13.76 7.79 87.66 0.68 14.44 16 8 O -0.58 -19.96 15.70 -3.06 -0.05 -20.01 16 9 N -0.71 -19.30 3.59 -442.42 -1.59 -20.89 16 10 C 0.17 5.36 2.21 45.02 0.10 5.46 16 11 H 0.07 2.39 7.58 -2.39 -0.02 2.38 16 12 C -0.14 -4.72 5.77 30.66 0.18 -4.55 16 13 C 0.15 6.07 6.26 86.35 0.54 6.61 16 14 N -0.61 -28.65 2.99 -699.15 -2.09 -30.74 16 15 C -0.26 -13.93 9.58 84.04 0.81 -13.13 16 16 H 0.06 3.11 7.89 -2.91 -0.02 3.09 16 17 C -0.04 -2.31 4.92 84.86 0.42 -1.89 16 18 N -0.93 -51.46 11.19 21.65 0.24 -51.21 16 19 Si 0.96 43.66 29.59 68.60 2.03 45.69 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 C 0.19 8.00 4.29 86.36 0.37 8.37 16 24 C -0.12 -3.88 2.67 -10.72 -0.03 -3.91 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 C -0.13 -3.55 9.05 71.98 0.65 -2.90 16 27 C -0.20 -3.67 9.81 22.37 0.22 -3.45 16 28 C 0.13 2.52 11.18 84.63 0.95 3.46 16 29 N -0.56 -13.54 9.22 -308.96 -2.85 -16.38 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.14 1.68 8.10 -2.38 -0.02 1.66 16 35 H 0.12 1.96 8.10 -2.39 -0.02 1.94 16 36 H 0.41 10.71 6.74 -92.71 -0.62 10.09 16 37 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.02 0.80 7.74 -2.39 -0.02 0.78 16 40 H 0.04 1.80 7.93 -2.39 -0.02 1.78 16 41 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 42 H 0.01 0.57 6.64 -2.39 -0.02 0.56 16 43 H 0.05 2.76 6.07 -2.39 -0.01 2.74 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.53 7.54 -2.38 -0.02 1.52 16 47 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -68.88 387.36 2.08 -66.80 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.33 Total: 23.19 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 7.00 Total: 12.66 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -6.29 Total: -119.22 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.99 Total: -29.12 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.88 2.08 -66.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942840234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds