Wall clock time and date at job start Tue Mar 31 2020 17:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49564 * 2 1 4 4 C 1.53203 * 109.52262 * 120.07749 * 2 1 3 5 5 N 1.46923 * 108.77613 * 174.60583 * 4 2 1 6 6 C 1.36930 * 120.63058 * 126.36413 * 5 4 2 7 7 H 1.07997 * 120.00713 * 331.83726 * 6 5 4 8 8 C 1.38814 * 119.99806 * 151.82924 * 6 5 4 9 9 N 1.31627 * 119.99987 * 343.09267 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 163.08659 * 8 6 5 11 11 H 1.48505 * 109.47105 * 90.00789 * 10 8 6 12 12 H 1.48505 * 109.47268 * 210.00080 * 10 8 6 13 13 H 1.48493 * 109.47507 * 330.00306 * 10 8 6 14 14 C 1.46930 * 118.73767 * 306.39180 * 5 4 2 15 15 C 1.53171 * 108.76829 * 53.60867 * 14 5 4 16 16 C 1.53036 * 109.50101 * 239.93194 * 2 1 3 17 17 H 1.09002 * 109.45821 * 298.67111 * 16 2 1 18 18 N 1.46496 * 109.46121 * 58.64230 * 16 2 1 19 19 C 1.34771 * 120.00161 * 205.02705 * 18 16 2 20 20 O 1.21495 * 120.00135 * 0.02562 * 19 18 16 21 21 C 1.48333 * 119.99849 * 180.02562 * 19 18 16 22 22 N 1.31495 * 127.15792 * 0.02562 * 21 19 18 23 23 O 1.21429 * 111.52502 * 179.97438 * 22 21 19 24 24 C 1.33184 * 111.57585 * 359.96503 * 23 22 21 25 25 C 1.35379 * 106.63017 * 359.82549 * 24 23 22 26 26 C 1.50070 * 124.93452 * 179.44074 * 25 24 23 27 27 C 1.53554 * 108.28896 * 344.44997 * 26 25 24 28 28 C 1.53105 * 109.50708 * 48.97684 * 27 26 25 29 29 C 1.50594 * 129.60536 * 180.18321 * 24 23 22 30 30 H 1.09001 * 109.46553 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47333 * 300.06561 * 1 2 3 32 32 H 1.08998 * 109.46838 * 60.07132 * 1 2 3 33 33 H 1.09006 * 109.58288 * 294.39182 * 4 2 1 34 34 H 1.08996 * 109.58366 * 54.81642 * 4 2 1 35 35 H 0.96996 * 119.99377 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58611 * 173.39491 * 14 5 4 37 37 H 1.08997 * 109.58619 * 293.82010 * 14 5 4 38 38 H 1.08999 * 109.47393 * 185.40767 * 15 14 5 39 39 H 1.09000 * 109.50202 * 65.31644 * 15 14 5 40 40 H 0.96997 * 119.99858 * 25.03029 * 18 16 2 41 41 H 1.08994 * 109.86149 * 224.64692 * 26 25 24 42 42 H 1.08991 * 109.53802 * 104.06691 * 26 25 24 43 43 H 1.09002 * 109.46551 * 288.96512 * 27 26 25 44 44 H 1.09000 * 109.46061 * 168.98873 * 27 26 25 45 45 H 1.09001 * 109.42928 * 170.06618 * 28 27 26 46 46 H 1.08995 * 109.43466 * 50.21815 * 28 27 26 47 47 H 1.08998 * 109.69761 * 282.92178 * 29 24 23 48 48 H 1.08999 * 109.69955 * 43.51202 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0420 -0.7237 1.2495 5 7 3.5053 -0.8283 1.1692 6 6 4.2942 -0.3772 2.1935 7 1 3.9505 0.4280 2.8257 8 6 5.5360 -0.9552 2.4193 9 7 5.8226 -2.1264 1.8915 10 14 6.8002 -0.0706 3.4722 11 1 6.6314 -0.4735 4.8916 12 1 8.1659 -0.4320 3.0143 13 1 6.6086 1.3966 3.3480 14 6 4.1060 -1.4255 -0.0313 15 6 3.5709 -0.6940 -1.2661 16 6 2.0409 -0.7228 -1.2484 17 1 1.6973 -1.7571 -1.2353 18 7 1.5263 -0.0527 -2.4452 19 6 1.3978 -0.7380 -3.5986 20 8 1.7083 -1.9117 -3.6457 21 6 0.8773 -0.0594 -4.8105 22 7 0.5020 1.1963 -4.9183 23 8 0.1222 1.4529 -6.0427 24 6 0.1970 0.3884 -6.8397 25 6 0.6874 -0.6249 -6.0878 26 6 0.9264 -2.0224 -6.5798 27 6 0.1752 -2.2011 -7.9070 28 6 0.4923 -1.0262 -8.8361 29 6 -0.1617 0.2524 -8.2960 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.7643 -0.1579 2.1389 34 1 1.6064 -1.7216 1.2980 35 1 6.6904 -2.5300 2.0490 36 1 5.1903 -1.3229 0.0129 37 1 3.8388 -2.4807 -0.0873 38 1 3.9337 -1.1886 -2.1671 39 1 3.9154 0.3401 -1.2542 40 1 1.2780 0.8842 -2.4076 41 1 0.5564 -2.7408 -5.8484 42 1 1.9938 -2.1755 -6.7380 43 1 -0.8974 -2.2338 -7.7158 44 1 0.4884 -3.1323 -8.3790 45 1 0.1056 -1.2378 -9.8331 46 1 1.5720 -0.8867 -8.8889 47 1 -1.2443 0.1847 -8.4030 48 1 0.2092 1.1160 -8.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942961470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:45 Heat of formation + Delta-G solvation = 28.246247 kcal Electronic energy + Delta-G solvation = -29251.848876 eV Core-core repulsion = 25309.764564 eV Total energy + Delta-G solvation = -3942.084312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.26947 -39.80374 -38.06756 -37.57561 -34.59223 -34.06725 -32.63883 -31.26665 -31.20163 -30.60133 -29.75477 -26.05886 -25.67326 -24.77569 -23.83123 -23.06054 -22.00400 -20.98776 -20.60508 -19.79724 -19.18446 -18.01234 -17.75971 -16.78165 -16.50255 -15.87591 -15.36502 -14.85896 -14.70945 -14.38512 -14.21814 -14.20700 -13.88200 -13.64417 -13.49458 -13.45298 -13.25862 -12.80484 -12.71098 -12.64858 -12.11843 -11.67620 -11.49759 -11.38577 -11.32714 -11.30070 -11.07543 -11.03311 -10.83152 -10.64168 -10.41967 -10.34739 -10.25094 -10.13049 -9.97802 -9.79371 -9.52246 -9.33087 -8.75285 -8.43008 -6.68231 -5.78600 -3.21561 0.97255 1.50757 2.63350 3.06641 3.21914 3.37901 3.44960 3.47227 3.86690 4.24443 4.36068 4.42743 4.49381 4.65129 4.73369 4.86977 5.04148 5.09583 5.11218 5.25703 5.30947 5.36626 5.40386 5.44032 5.50722 5.56327 5.59489 5.63260 5.73560 5.87992 5.90189 5.97981 6.03246 6.09841 6.24261 6.26407 6.32241 6.44628 6.58581 6.66461 6.76694 6.87523 6.95590 7.36196 7.53388 7.67376 7.79791 7.86095 8.21872 8.44982 9.20852 9.84105 10.40816 11.30076 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.002535 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.578675 B =11042.861395 C =11442.436711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.072 0.928 4 C 0.156 3.844 5 N -0.592 5.592 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.175 3.825 15 C -0.148 4.148 16 C 0.157 3.843 17 H 0.085 0.915 18 N -0.704 5.704 19 C 0.594 3.406 20 O -0.519 6.519 21 C -0.012 4.012 22 N -0.339 5.339 23 O 0.125 5.875 24 C -0.042 4.042 25 C -0.152 4.152 26 C -0.046 4.046 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.034 4.034 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.021 0.979 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 4.032 -21.914 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.188 4.188 16 C 0.054 3.946 17 H 0.103 0.897 18 N -0.354 5.354 19 C 0.377 3.623 20 O -0.394 6.394 21 C -0.170 4.170 22 N -0.042 5.042 23 O 0.052 5.948 24 C -0.107 4.107 25 C -0.156 4.156 26 C -0.083 4.083 27 C -0.161 4.161 28 C -0.157 4.157 29 C -0.072 4.072 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.600 4.062 -20.960 25.314 hybrid contribution 0.705 0.344 0.268 0.829 sum -12.894 4.407 -20.692 24.776 Atomic orbital electron populations 1.21778 0.95750 1.01598 1.00939 1.21987 0.94580 1.00697 0.96323 0.90965 1.20895 0.85982 0.96633 0.93666 1.44096 0.99276 1.71452 1.16630 1.19153 0.98528 1.11965 1.08748 0.91668 1.25062 0.99959 0.95346 0.99226 1.70036 1.22155 1.14492 1.47842 0.86311 0.81108 0.79401 0.80026 1.21366 1.21554 1.20508 1.20754 0.99444 0.93096 0.81879 1.22599 0.93592 1.01716 1.00940 1.21176 0.94758 0.96909 0.81758 0.89678 1.46203 1.64583 1.14599 1.10039 1.16855 0.78347 0.85859 0.81268 1.90797 1.49757 1.14927 1.83884 1.23213 1.05483 0.91142 0.97160 1.74559 1.14130 1.16524 0.98956 1.84668 1.60889 1.34628 1.14606 1.24121 1.03657 0.86102 0.96774 1.20684 1.04545 0.99120 0.91300 1.20015 1.01564 0.90112 0.96653 1.21723 1.00846 0.98557 0.94974 1.21660 1.01577 0.93212 0.99236 1.20255 1.02142 1.00053 0.84733 0.92848 0.92579 0.93528 0.92267 0.96093 0.93573 0.89178 0.96040 0.92735 0.92548 0.76490 0.89096 0.89771 0.91381 0.90527 0.90045 0.90956 0.88755 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.03 37.16 0.34 -1.69 16 2 C -0.11 -1.98 2.46 -90.50 -0.22 -2.20 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.16 3.23 5.80 -3.71 -0.02 3.21 16 5 N -0.59 -14.89 2.99 -172.33 -0.52 -15.41 16 6 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 7 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 8 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -26.41 11.20 55.49 0.62 -25.79 16 10 Si 0.90 21.79 29.59 -169.99 -5.03 16.77 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.17 4.28 5.30 -3.72 -0.02 4.26 16 15 C -0.15 -3.03 5.65 -26.62 -0.15 -3.18 16 16 C 0.16 2.83 1.88 -67.89 -0.13 2.70 16 17 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 18 N -0.70 -11.15 4.36 -54.56 -0.24 -11.39 16 19 C 0.59 9.84 7.81 -12.11 -0.09 9.75 16 20 O -0.52 -9.90 15.75 5.37 0.08 -9.81 16 21 C -0.01 -0.17 7.19 -82.82 -0.60 -0.76 16 22 N -0.34 -4.59 11.89 33.29 0.40 -4.20 16 23 O 0.12 1.43 11.18 19.20 0.21 1.64 16 24 C -0.04 -0.41 7.38 -35.38 -0.26 -0.67 16 25 C -0.15 -1.80 6.05 -104.91 -0.63 -2.43 16 26 C -0.05 -0.46 5.66 -27.90 -0.16 -0.62 16 27 C -0.12 -0.80 5.92 -26.39 -0.16 -0.95 16 28 C -0.12 -0.59 5.88 -26.45 -0.16 -0.75 16 29 C -0.03 -0.18 6.31 -27.71 -0.17 -0.36 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 33 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.40 5.73 8.08 -40.82 -0.33 5.40 16 41 H 0.09 1.04 7.84 -51.93 -0.41 0.64 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -31.71 380.06 -9.11 -40.82 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.70 Total: 2.47 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.67 Total: -0.82 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.26 Total: -56.79 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.30 Total: -8.17 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.71 -9.11 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942961470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.064 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds