Wall clock time and date at job start Tue Mar 31 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49564 * 2 1 4 4 C 1.53203 * 109.52262 * 120.07749 * 2 1 3 5 5 N 1.46923 * 108.77613 * 174.60583 * 4 2 1 6 6 C 1.36930 * 120.63058 * 126.36413 * 5 4 2 7 7 H 1.07997 * 120.00713 * 331.83726 * 6 5 4 8 8 C 1.38814 * 119.99806 * 151.82924 * 6 5 4 9 9 N 1.31627 * 119.99987 * 343.09267 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 163.08659 * 8 6 5 11 11 H 1.48505 * 109.47105 * 90.00789 * 10 8 6 12 12 H 1.48505 * 109.47268 * 210.00080 * 10 8 6 13 13 H 1.48493 * 109.47507 * 330.00306 * 10 8 6 14 14 C 1.46930 * 118.73767 * 306.39180 * 5 4 2 15 15 C 1.53171 * 108.76829 * 53.60867 * 14 5 4 16 16 C 1.53036 * 109.50101 * 239.93194 * 2 1 3 17 17 H 1.09002 * 109.45821 * 298.67111 * 16 2 1 18 18 N 1.46496 * 109.46121 * 58.64230 * 16 2 1 19 19 C 1.34771 * 120.00161 * 205.02705 * 18 16 2 20 20 O 1.21495 * 120.00135 * 0.02562 * 19 18 16 21 21 C 1.48333 * 119.99849 * 180.02562 * 19 18 16 22 22 N 1.31495 * 127.15792 * 0.02562 * 21 19 18 23 23 O 1.21429 * 111.52502 * 179.97438 * 22 21 19 24 24 C 1.33184 * 111.57585 * 359.96503 * 23 22 21 25 25 C 1.35379 * 106.63017 * 359.82549 * 24 23 22 26 26 C 1.50070 * 124.93452 * 179.44074 * 25 24 23 27 27 C 1.53554 * 108.28896 * 344.44997 * 26 25 24 28 28 C 1.53105 * 109.50708 * 48.97684 * 27 26 25 29 29 C 1.50594 * 129.60536 * 180.18321 * 24 23 22 30 30 H 1.09001 * 109.46553 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47333 * 300.06561 * 1 2 3 32 32 H 1.08998 * 109.46838 * 60.07132 * 1 2 3 33 33 H 1.09006 * 109.58288 * 294.39182 * 4 2 1 34 34 H 1.08996 * 109.58366 * 54.81642 * 4 2 1 35 35 H 0.96996 * 119.99377 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58611 * 173.39491 * 14 5 4 37 37 H 1.08997 * 109.58619 * 293.82010 * 14 5 4 38 38 H 1.08999 * 109.47393 * 185.40767 * 15 14 5 39 39 H 1.09000 * 109.50202 * 65.31644 * 15 14 5 40 40 H 0.96997 * 119.99858 * 25.03029 * 18 16 2 41 41 H 1.08994 * 109.86149 * 224.64692 * 26 25 24 42 42 H 1.08991 * 109.53802 * 104.06691 * 26 25 24 43 43 H 1.09002 * 109.46551 * 288.96512 * 27 26 25 44 44 H 1.09000 * 109.46061 * 168.98873 * 27 26 25 45 45 H 1.09001 * 109.42928 * 170.06618 * 28 27 26 46 46 H 1.08995 * 109.43466 * 50.21815 * 28 27 26 47 47 H 1.08998 * 109.69761 * 282.92178 * 29 24 23 48 48 H 1.08999 * 109.69955 * 43.51202 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0420 -0.7237 1.2495 5 7 3.5053 -0.8283 1.1692 6 6 4.2942 -0.3772 2.1935 7 1 3.9505 0.4280 2.8257 8 6 5.5360 -0.9552 2.4193 9 7 5.8226 -2.1264 1.8915 10 14 6.8002 -0.0706 3.4722 11 1 6.6314 -0.4735 4.8916 12 1 8.1659 -0.4320 3.0143 13 1 6.6086 1.3966 3.3480 14 6 4.1060 -1.4255 -0.0313 15 6 3.5709 -0.6940 -1.2661 16 6 2.0409 -0.7228 -1.2484 17 1 1.6973 -1.7571 -1.2353 18 7 1.5263 -0.0527 -2.4452 19 6 1.3978 -0.7380 -3.5986 20 8 1.7083 -1.9117 -3.6457 21 6 0.8773 -0.0594 -4.8105 22 7 0.5020 1.1963 -4.9183 23 8 0.1222 1.4529 -6.0427 24 6 0.1970 0.3884 -6.8397 25 6 0.6874 -0.6249 -6.0878 26 6 0.9264 -2.0224 -6.5798 27 6 0.1752 -2.2011 -7.9070 28 6 0.4923 -1.0262 -8.8361 29 6 -0.1617 0.2524 -8.2960 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.7643 -0.1579 2.1389 34 1 1.6064 -1.7216 1.2980 35 1 6.6904 -2.5300 2.0490 36 1 5.1903 -1.3229 0.0129 37 1 3.8388 -2.4807 -0.0873 38 1 3.9337 -1.1886 -2.1671 39 1 3.9154 0.3401 -1.2542 40 1 1.2780 0.8842 -2.4076 41 1 0.5564 -2.7408 -5.8484 42 1 1.9938 -2.1755 -6.7380 43 1 -0.8974 -2.2338 -7.7158 44 1 0.4884 -3.1323 -8.3790 45 1 0.1056 -1.2378 -9.8331 46 1 1.5720 -0.8867 -8.8889 47 1 -1.2443 0.1847 -8.4030 48 1 0.2092 1.1160 -8.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942961470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:44 Heat of formation + Delta-G solvation = 9.373849 kcal Electronic energy + Delta-G solvation = -29252.667245 eV Core-core repulsion = 25309.764564 eV Total energy + Delta-G solvation = -3942.902680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -46.22492 -41.22603 -39.33348 -38.55263 -36.30987 -35.09552 -34.19063 -32.99937 -32.00597 -31.78296 -31.07841 -27.50595 -27.39970 -25.86310 -24.98541 -23.77440 -23.55396 -22.71292 -21.74630 -21.08940 -20.36249 -19.01036 -18.86428 -18.54289 -17.68839 -17.33328 -16.76881 -16.14981 -16.04142 -15.68354 -15.62575 -15.25225 -14.91264 -14.81175 -14.76231 -14.60318 -14.41546 -14.23543 -14.14089 -13.67872 -13.26376 -13.11293 -13.05513 -12.80500 -12.65267 -12.51648 -12.35621 -12.15615 -12.11524 -11.91765 -11.86489 -11.77432 -11.65992 -11.63244 -11.44000 -11.31950 -11.18550 -10.60318 -10.18954 -10.13002 -8.74763 -7.90626 -5.37059 -0.03875 0.59907 1.45255 1.47056 1.56832 1.71722 1.94089 1.97484 2.49033 2.79971 3.25358 3.45799 3.58680 3.63579 3.66227 3.92110 3.93300 3.99606 4.06767 4.08857 4.23368 4.28835 4.35907 4.48037 4.52419 4.58058 4.62156 4.64549 4.78063 4.80865 4.88528 4.92285 4.93361 5.00239 5.01221 5.06014 5.16915 5.19415 5.20956 5.30327 5.33293 5.37249 5.43895 5.43935 5.59726 5.64689 6.24616 6.35145 6.85298 6.97461 7.09792 7.79934 8.33211 9.16711 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.002535 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.578675 B =11042.861395 C =11442.436711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.077 0.923 4 C 0.151 3.849 5 N -0.609 5.609 6 C -0.263 4.263 7 H 0.072 0.928 8 C -0.053 4.053 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.283 1.283 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.185 3.815 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.066 0.934 18 N -0.694 5.694 19 C 0.593 3.407 20 O -0.552 6.552 21 C -0.038 4.038 22 N -0.351 5.351 23 O 0.135 5.865 24 C -0.019 4.019 25 C -0.175 4.175 26 C -0.047 4.047 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.034 4.034 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.014 0.986 35 H 0.250 0.750 36 H 0.058 0.942 37 H -0.006 1.006 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.120 0.880 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 6.197 -24.074 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 H 0.095 0.905 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.393 4.393 7 H 0.090 0.910 8 C -0.248 4.248 9 N -0.583 5.583 10 Si 0.797 3.203 11 H -0.209 1.209 12 H -0.221 1.221 13 H -0.193 1.193 14 C 0.058 3.942 15 C -0.173 4.173 16 C 0.065 3.935 17 H 0.084 0.916 18 N -0.345 5.345 19 C 0.378 3.622 20 O -0.428 6.428 21 C -0.195 4.195 22 N -0.053 5.053 23 O 0.060 5.940 24 C -0.083 4.083 25 C -0.180 4.180 26 C -0.085 4.085 27 C -0.156 4.156 28 C -0.154 4.154 29 C -0.071 4.071 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.248 0.752 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.131 0.869 46 H 0.084 0.916 47 H 0.138 0.862 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.618 6.264 -23.109 28.587 hybrid contribution 1.266 -0.348 0.872 1.576 sum -14.353 5.916 -22.238 27.120 Atomic orbital electron populations 1.21709 0.92820 1.02024 1.02624 1.21788 0.96825 0.99862 0.93676 0.90512 1.21066 0.83541 0.96904 0.95946 1.44332 1.01088 1.71437 1.16345 1.19534 0.99067 1.11857 1.08886 0.90992 1.25874 1.01915 0.96008 1.00991 1.70202 1.22286 1.16084 1.49708 0.85253 0.78124 0.78638 0.78285 1.20922 1.22066 1.19347 1.20450 0.97712 0.92192 0.83802 1.22349 0.95586 1.00878 0.98504 1.20827 0.92845 0.96475 0.83360 0.91587 1.45955 1.64339 1.14944 1.09261 1.17163 0.77588 0.85545 0.81897 1.90778 1.51112 1.16427 1.84513 1.22997 1.07307 0.92003 0.97155 1.74536 1.14609 1.16019 1.00092 1.84640 1.59999 1.35125 1.14224 1.24917 1.00971 0.84392 0.98067 1.20966 1.05744 1.00500 0.90808 1.20041 1.01415 0.88803 0.98236 1.21729 1.00560 1.00137 0.93169 1.21703 1.01431 0.92089 1.00151 1.20627 1.03810 1.01202 0.81493 0.93094 0.90731 0.91988 0.91403 0.96768 0.94081 0.92401 0.98818 0.93305 0.92310 0.75213 0.91489 0.90866 0.90770 0.89344 0.86926 0.91583 0.86215 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.03 71.98 0.65 -2.88 16 2 C -0.10 -3.39 2.46 -10.71 -0.03 -3.41 16 3 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.15 6.31 5.80 86.37 0.50 6.81 16 5 N -0.61 -31.37 2.99 -699.12 -2.09 -33.47 16 6 C -0.26 -14.65 9.58 84.04 0.81 -13.84 16 7 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 8 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 9 N -0.94 -57.02 11.20 21.65 0.24 -56.78 16 10 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 C 0.19 9.56 5.30 86.35 0.46 10.01 16 15 C -0.13 -5.64 5.65 30.66 0.17 -5.46 16 16 C 0.17 6.18 1.88 45.02 0.08 6.27 16 17 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 18 N -0.69 -21.96 4.36 -444.83 -1.94 -23.90 16 19 C 0.59 20.11 7.81 86.93 0.68 20.79 16 20 O -0.55 -22.04 15.75 -3.70 -0.06 -22.09 16 21 C -0.04 -1.09 7.19 42.55 0.31 -0.78 16 22 N -0.35 -9.12 11.89 -48.94 -0.58 -9.70 16 23 O 0.13 2.80 11.18 78.74 0.88 3.68 16 24 C -0.02 -0.32 7.38 24.99 0.18 -0.13 16 25 C -0.17 -4.04 6.05 -20.05 -0.12 -4.16 16 26 C -0.05 -0.96 5.66 29.84 0.17 -0.79 16 27 C -0.12 -1.28 5.92 30.82 0.18 -1.09 16 28 C -0.12 -0.72 5.88 30.78 0.18 -0.54 16 29 C -0.03 -0.22 6.31 29.96 0.19 -0.03 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.47 7.36 -2.39 -0.02 1.45 16 33 H 0.07 2.69 7.93 -2.38 -0.02 2.67 16 34 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.06 3.35 6.06 -2.39 -0.01 3.33 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.41 11.35 8.08 -92.71 -0.75 10.60 16 41 H 0.07 1.64 7.84 -2.39 -0.02 1.62 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 47 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.12 0.29 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -72.28 380.06 3.53 -68.75 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.22 Total: 17.82 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 4.83 Total: 8.17 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -4.37 Total: -123.85 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.82 Total: -18.41 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.28 3.53 -68.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942961470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.122 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds