Wall clock time and date at job start Tue Mar 31 2020 17:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49594 * 2 1 4 4 C 1.53189 * 109.50274 * 120.06522 * 2 1 3 5 5 N 1.46922 * 108.78036 * 174.58597 * 4 2 1 6 6 C 1.36936 * 120.63291 * 126.36671 * 5 4 2 7 7 H 1.08002 * 120.00172 * 333.39033 * 6 5 4 8 8 C 1.38812 * 120.00088 * 153.38853 * 6 5 4 9 9 N 1.31611 * 120.00091 * 158.91661 * 8 6 5 10 10 Si 1.86798 * 119.99879 * 339.18673 * 8 6 5 11 11 H 1.48503 * 109.47513 * 95.07229 * 10 8 6 12 12 H 1.48502 * 109.47210 * 215.07047 * 10 8 6 13 13 H 1.48503 * 109.47342 * 335.07379 * 10 8 6 14 14 C 1.46931 * 118.73721 * 306.64827 * 5 4 2 15 15 C 1.52759 * 109.00997 * 53.30446 * 14 5 4 16 16 C 1.53039 * 109.49729 * 239.90763 * 2 1 3 17 17 H 1.09005 * 109.45715 * 298.70011 * 16 2 1 18 18 N 1.46497 * 109.46133 * 58.65847 * 16 2 1 19 19 C 1.34774 * 120.00325 * 205.00073 * 18 16 2 20 20 O 1.21612 * 120.00012 * 0.02562 * 19 18 16 21 21 C 1.47418 * 120.00476 * 180.02562 * 19 18 16 22 22 C 1.36088 * 126.45061 * 179.69014 * 21 19 18 23 23 O 1.34260 * 106.95180 * 179.84145 * 22 21 19 24 24 C 1.34055 * 108.22238 * 0.42323 * 23 22 21 25 25 C 1.50703 * 125.37672 * 179.69358 * 24 23 22 26 26 C 1.52999 * 109.47094 * 270.04392 * 25 24 23 27 27 C 1.53004 * 117.49791 * 243.62034 * 26 25 24 28 28 C 1.52994 * 60.00107 * 252.51363 * 27 26 25 29 29 N 1.29934 * 109.24417 * 359.73251 * 24 23 22 30 30 H 1.08999 * 109.46585 * 299.92847 * 1 2 3 31 31 H 1.08993 * 109.47121 * 59.93057 * 1 2 3 32 32 H 1.09006 * 109.46806 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.58476 * 54.79820 * 4 2 1 34 34 H 1.08996 * 109.70235 * 294.44823 * 4 2 1 35 35 H 0.97001 * 120.00195 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.58572 * 173.14146 * 14 5 4 37 37 H 1.08996 * 109.58363 * 293.56400 * 14 5 4 38 38 H 1.08995 * 109.56777 * 185.54817 * 15 14 5 39 39 H 1.09004 * 109.38889 * 65.51545 * 15 14 5 40 40 H 0.97006 * 120.00133 * 25.00495 * 18 16 2 41 41 H 1.08002 * 126.52643 * 0.02562 * 22 21 19 42 42 H 1.09001 * 109.47127 * 30.04234 * 25 24 23 43 43 H 1.08998 * 109.47088 * 150.04360 * 25 24 23 44 44 H 1.08994 * 115.55401 * 29.32882 * 26 25 24 45 45 H 1.09003 * 117.49748 * 0.02562 * 27 26 25 46 46 H 1.08993 * 117.50083 * 145.01684 * 27 26 25 47 47 H 1.08999 * 117.49890 * 252.50983 * 28 27 26 48 48 H 1.08997 * 117.50207 * 107.48884 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 3.5047 -0.8288 1.1697 6 6 4.2937 -0.3778 2.1940 7 1 3.9397 0.4108 2.8415 8 6 5.5486 -0.9342 2.4002 9 7 6.4612 -0.2679 3.0750 10 14 5.9446 -2.6257 1.7135 11 1 6.6175 -2.4806 0.3976 12 1 6.8436 -3.3433 2.6527 13 1 4.6875 -3.3979 1.5440 14 6 4.1056 -1.4215 -0.0330 15 6 3.5709 -0.6953 -1.2659 16 6 2.0408 -0.7233 -1.2482 17 1 1.6967 -1.7576 -1.2349 18 7 1.5265 -0.0535 -2.4453 19 6 1.3984 -0.7390 -3.5986 20 8 1.7094 -1.9138 -3.6454 21 6 0.8813 -0.0649 -4.8033 22 6 0.7048 -0.6256 -6.0307 23 8 0.2138 0.3331 -6.8321 24 6 0.0999 1.4605 -6.1159 25 6 -0.4069 2.7796 -6.6397 26 6 0.7660 3.5956 -7.1868 27 6 1.0936 4.9172 -6.4889 28 6 0.4429 4.9241 -7.8736 29 7 0.4963 1.2366 -4.8989 30 1 -0.3632 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7213 1.2984 34 1 1.7638 -0.1595 2.1402 35 1 7.3382 -0.6565 3.2188 36 1 5.1896 -1.3158 0.0102 37 1 3.8414 -2.4773 -0.0910 38 1 3.9334 -1.1900 -2.1669 39 1 3.9159 0.3387 -1.2549 40 1 1.2781 0.8834 -2.4079 41 1 0.9164 -1.6481 -6.3067 42 1 -1.1283 2.6008 -7.4370 43 1 -0.8875 3.3309 -5.8317 44 1 1.5994 3.0146 -7.5816 45 1 0.4737 5.2051 -5.6398 46 1 2.1426 5.2057 -6.4243 47 1 1.0639 5.2171 -8.7201 48 1 -0.6052 5.2166 -7.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943796350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:34 Heat of formation + Delta-G solvation = 28.160261 kcal Electronic energy + Delta-G solvation = -28717.993853 eV Core-core repulsion = 24775.905812 eV Total energy + Delta-G solvation = -3942.088040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.70502 -39.82768 -38.07068 -37.85274 -35.13395 -34.68346 -32.66867 -32.15126 -31.59066 -30.17192 -28.28728 -26.40220 -25.55049 -23.78529 -22.81090 -22.35026 -21.97924 -21.41121 -20.99920 -20.36331 -19.63875 -18.15839 -17.08537 -16.84456 -16.64160 -16.24703 -16.04662 -15.05007 -14.85289 -14.67487 -14.61697 -14.39444 -13.90357 -13.81190 -13.49193 -13.44418 -13.29555 -13.08934 -12.71683 -12.24824 -12.10261 -11.94610 -11.93950 -11.63975 -11.54522 -11.48494 -11.09284 -10.99519 -10.86710 -10.59365 -10.54052 -10.49109 -10.23918 -10.08605 -9.97826 -9.74466 -9.46612 -9.29491 -8.78668 -8.58320 -6.97980 -5.93058 -3.28454 0.88253 1.76398 2.24476 3.09765 3.27130 3.32320 3.36957 3.52261 3.55271 3.56389 4.22620 4.40344 4.43427 4.56195 4.58796 4.62052 4.81537 4.93559 5.01874 5.03223 5.09721 5.22353 5.28396 5.29438 5.36711 5.39355 5.46199 5.49394 5.67071 5.70304 5.72665 5.79382 5.88866 5.91272 6.06030 6.12188 6.15445 6.29870 6.39084 6.43206 6.61219 6.65615 6.72623 6.74109 6.95170 7.18503 7.64168 7.96757 8.22334 8.33992 8.95096 9.73959 10.11111 11.22716 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.002589 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.508115 B =10811.327462 C =11185.010292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.077 0.923 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.156 3.844 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.598 3.402 20 O -0.539 6.539 21 C -0.067 4.067 22 C 0.008 3.992 23 O -0.197 6.197 24 C 0.199 3.801 25 C 0.009 3.991 26 C -0.158 4.158 27 C -0.171 4.171 28 C -0.174 4.174 29 N -0.453 5.453 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.406 0.594 41 H 0.231 0.769 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 7.379 -22.621 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.329 5.329 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.182 4.182 16 C 0.053 3.947 17 H 0.103 0.897 18 N -0.350 5.350 19 C 0.382 3.618 20 O -0.416 6.416 21 C -0.187 4.187 22 C -0.065 4.065 23 O -0.083 6.083 24 C -0.010 4.010 25 C -0.029 4.029 26 C -0.177 4.177 27 C -0.208 4.208 28 C -0.211 4.211 29 N -0.183 5.183 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.241 0.759 41 H 0.247 0.753 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.104 6.993 -22.044 28.181 hybrid contribution 0.413 -1.095 -0.919 1.488 sum -15.690 5.899 -22.963 28.431 Atomic orbital electron populations 1.21770 0.95390 1.01635 1.01250 1.21963 0.94924 1.00966 0.95805 0.90466 1.20919 0.84308 0.97059 0.94545 1.44394 1.00774 1.71997 1.15781 1.18912 0.97424 1.14536 1.07919 0.89608 1.25251 0.96344 0.98104 0.97836 1.69840 1.04134 1.36954 1.44178 0.86981 0.77883 0.87013 0.77073 1.21680 1.23166 1.19334 1.21226 0.98091 0.94861 0.85494 1.22345 0.94371 1.02139 0.99391 1.21090 0.94059 0.97136 0.82444 0.89693 1.46050 1.64365 1.14876 1.09703 1.16753 0.77798 0.85532 0.81674 1.90831 1.51103 1.15233 1.84454 1.21935 1.09249 0.91029 0.96461 1.25300 0.97905 0.94616 0.88722 1.84387 1.63153 1.19224 1.41517 1.26122 1.00241 0.89068 0.85580 1.19703 0.96690 0.84858 1.01675 1.22147 0.99991 0.90187 1.05345 1.23099 1.02239 0.99544 0.95926 1.23019 1.02096 0.99412 0.96537 1.70774 1.14387 1.14568 1.18612 0.92444 0.93180 0.92890 0.95651 0.91333 0.92794 0.90792 0.95389 0.92257 0.91520 0.75902 0.75319 0.88247 0.87220 0.87469 0.88142 0.88490 0.88454 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.02 37.16 0.34 -1.53 16 2 C -0.12 -1.86 2.46 -90.50 -0.22 -2.09 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 4 C 0.16 3.08 5.80 -3.71 -0.02 3.06 16 5 N -0.61 -14.49 2.78 -172.58 -0.48 -14.97 16 6 C -0.26 -7.27 10.04 -15.06 -0.15 -7.42 16 7 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 8 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 9 N -0.91 -28.05 13.97 55.49 0.78 -27.28 16 10 Si 0.88 22.86 24.35 -169.99 -4.14 18.72 16 11 H -0.29 -7.33 6.70 56.52 0.38 -6.95 16 12 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 13 H -0.27 -6.86 6.48 56.52 0.37 -6.49 16 14 C 0.13 2.94 4.17 -3.93 -0.02 2.92 16 15 C -0.14 -2.73 5.64 -26.83 -0.15 -2.88 16 16 C 0.16 2.63 1.88 -67.89 -0.13 2.50 16 17 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 18 N -0.70 -10.33 4.36 -54.84 -0.24 -10.57 16 19 C 0.60 9.19 7.78 -12.52 -0.10 9.10 16 20 O -0.54 -9.73 16.55 5.27 0.09 -9.65 16 21 C -0.07 -0.86 6.99 -83.02 -0.58 -1.44 16 22 C 0.01 0.09 11.94 29.96 0.36 0.44 16 23 O -0.20 -1.92 10.73 6.49 0.07 -1.85 16 24 C 0.20 1.91 7.51 -13.08 -0.10 1.81 16 25 C 0.01 0.05 6.12 -27.88 -0.17 -0.12 16 26 C -0.16 -0.97 5.72 -90.62 -0.52 -1.49 16 27 C -0.17 -1.02 10.18 -26.73 -0.27 -1.30 16 28 C -0.17 -0.82 10.25 -26.73 -0.27 -1.09 16 29 N -0.45 -5.42 11.06 -7.65 -0.08 -5.50 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.07 1.83 4.49 -51.93 -0.23 1.60 16 37 H 0.03 0.64 7.01 -51.93 -0.36 0.28 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.41 5.42 8.04 -40.82 -0.33 5.09 16 41 H 0.23 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.56 7.87 -51.93 -0.41 0.16 16 44 H 0.11 0.76 8.07 -51.93 -0.42 0.34 16 45 H 0.10 0.56 8.03 -51.93 -0.42 0.15 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -33.50 387.06 -7.90 -41.40 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.62 Total: 2.79 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.10 Total: 1.07 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.03 Total: -58.32 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.16 Total: -11.49 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.14 Total: 18.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.50 -7.90 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.565 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds