Wall clock time and date at job start Tue Mar 31 2020 17:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49594 * 2 1 4 4 C 1.53189 * 109.50274 * 120.06522 * 2 1 3 5 5 N 1.46922 * 108.78036 * 174.58597 * 4 2 1 6 6 C 1.36936 * 120.63291 * 126.36671 * 5 4 2 7 7 H 1.08002 * 120.00172 * 333.39033 * 6 5 4 8 8 C 1.38812 * 120.00088 * 153.38853 * 6 5 4 9 9 N 1.31611 * 120.00091 * 158.91661 * 8 6 5 10 10 Si 1.86798 * 119.99879 * 339.18673 * 8 6 5 11 11 H 1.48503 * 109.47513 * 95.07229 * 10 8 6 12 12 H 1.48502 * 109.47210 * 215.07047 * 10 8 6 13 13 H 1.48503 * 109.47342 * 335.07379 * 10 8 6 14 14 C 1.46931 * 118.73721 * 306.64827 * 5 4 2 15 15 C 1.52759 * 109.00997 * 53.30446 * 14 5 4 16 16 C 1.53039 * 109.49729 * 239.90763 * 2 1 3 17 17 H 1.09005 * 109.45715 * 298.70011 * 16 2 1 18 18 N 1.46497 * 109.46133 * 58.65847 * 16 2 1 19 19 C 1.34774 * 120.00325 * 205.00073 * 18 16 2 20 20 O 1.21612 * 120.00012 * 0.02562 * 19 18 16 21 21 C 1.47418 * 120.00476 * 180.02562 * 19 18 16 22 22 C 1.36088 * 126.45061 * 179.69014 * 21 19 18 23 23 O 1.34260 * 106.95180 * 179.84145 * 22 21 19 24 24 C 1.34055 * 108.22238 * 0.42323 * 23 22 21 25 25 C 1.50703 * 125.37672 * 179.69358 * 24 23 22 26 26 C 1.52999 * 109.47094 * 270.04392 * 25 24 23 27 27 C 1.53004 * 117.49791 * 243.62034 * 26 25 24 28 28 C 1.52994 * 60.00107 * 252.51363 * 27 26 25 29 29 N 1.29934 * 109.24417 * 359.73251 * 24 23 22 30 30 H 1.08999 * 109.46585 * 299.92847 * 1 2 3 31 31 H 1.08993 * 109.47121 * 59.93057 * 1 2 3 32 32 H 1.09006 * 109.46806 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.58476 * 54.79820 * 4 2 1 34 34 H 1.08996 * 109.70235 * 294.44823 * 4 2 1 35 35 H 0.97001 * 120.00195 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.58572 * 173.14146 * 14 5 4 37 37 H 1.08996 * 109.58363 * 293.56400 * 14 5 4 38 38 H 1.08995 * 109.56777 * 185.54817 * 15 14 5 39 39 H 1.09004 * 109.38889 * 65.51545 * 15 14 5 40 40 H 0.97006 * 120.00133 * 25.00495 * 18 16 2 41 41 H 1.08002 * 126.52643 * 0.02562 * 22 21 19 42 42 H 1.09001 * 109.47127 * 30.04234 * 25 24 23 43 43 H 1.08998 * 109.47088 * 150.04360 * 25 24 23 44 44 H 1.08994 * 115.55401 * 29.32882 * 26 25 24 45 45 H 1.09003 * 117.49748 * 0.02562 * 27 26 25 46 46 H 1.08993 * 117.50083 * 145.01684 * 27 26 25 47 47 H 1.08999 * 117.49890 * 252.50983 * 28 27 26 48 48 H 1.08997 * 117.50207 * 107.48884 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 3.5047 -0.8288 1.1697 6 6 4.2937 -0.3778 2.1940 7 1 3.9397 0.4108 2.8415 8 6 5.5486 -0.9342 2.4002 9 7 6.4612 -0.2679 3.0750 10 14 5.9446 -2.6257 1.7135 11 1 6.6175 -2.4806 0.3976 12 1 6.8436 -3.3433 2.6527 13 1 4.6875 -3.3979 1.5440 14 6 4.1056 -1.4215 -0.0330 15 6 3.5709 -0.6953 -1.2659 16 6 2.0408 -0.7233 -1.2482 17 1 1.6967 -1.7576 -1.2349 18 7 1.5265 -0.0535 -2.4453 19 6 1.3984 -0.7390 -3.5986 20 8 1.7094 -1.9138 -3.6454 21 6 0.8813 -0.0649 -4.8033 22 6 0.7048 -0.6256 -6.0307 23 8 0.2138 0.3331 -6.8321 24 6 0.0999 1.4605 -6.1159 25 6 -0.4069 2.7796 -6.6397 26 6 0.7660 3.5956 -7.1868 27 6 1.0936 4.9172 -6.4889 28 6 0.4429 4.9241 -7.8736 29 7 0.4963 1.2366 -4.8989 30 1 -0.3632 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7213 1.2984 34 1 1.7638 -0.1595 2.1402 35 1 7.3382 -0.6565 3.2188 36 1 5.1896 -1.3158 0.0102 37 1 3.8414 -2.4773 -0.0910 38 1 3.9334 -1.1900 -2.1669 39 1 3.9159 0.3387 -1.2549 40 1 1.2781 0.8834 -2.4079 41 1 0.9164 -1.6481 -6.3067 42 1 -1.1283 2.6008 -7.4370 43 1 -0.8875 3.3309 -5.8317 44 1 1.5994 3.0146 -7.5816 45 1 0.4737 5.2051 -5.6398 46 1 2.1426 5.2057 -6.4243 47 1 1.0639 5.2171 -8.7201 48 1 -0.6052 5.2166 -7.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943796350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:33 Heat of formation + Delta-G solvation = 4.395256 kcal Electronic energy + Delta-G solvation = -28719.024381 eV Core-core repulsion = 24775.905812 eV Total energy + Delta-G solvation = -3943.118568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.50540 -41.13440 -39.37343 -38.48151 -36.35430 -35.94811 -34.22273 -33.41334 -32.87669 -31.83405 -28.99211 -27.85497 -27.14000 -25.11636 -23.59022 -23.21622 -23.10516 -22.85825 -21.77927 -21.46318 -20.91781 -19.22210 -18.74476 -17.87155 -17.66570 -17.57911 -16.86466 -16.65612 -16.13045 -16.06441 -15.65423 -15.20464 -15.15364 -14.98052 -14.91146 -14.73206 -14.52722 -14.29819 -13.88997 -13.74494 -13.62013 -13.33054 -12.86402 -12.78406 -12.71508 -12.32895 -12.27967 -12.25491 -12.14187 -11.98813 -11.91334 -11.75587 -11.51818 -11.47265 -11.30829 -11.22644 -10.89417 -10.76425 -10.23617 -9.97415 -8.99332 -8.18404 -5.49481 0.02735 0.89963 1.28355 1.38921 1.47731 1.51473 1.99459 2.18465 2.39727 2.75152 2.92331 3.00834 3.30949 3.57360 3.68654 3.75105 3.80366 3.86964 4.01759 4.05963 4.10942 4.18657 4.26727 4.38149 4.44256 4.53763 4.56297 4.59365 4.68945 4.70314 4.74834 4.77766 4.85366 4.86637 4.87510 5.00332 5.03352 5.08347 5.10996 5.15113 5.26945 5.27373 5.31073 5.39107 5.49021 5.84085 6.11187 6.27306 6.56546 6.87828 7.04961 7.59258 8.00371 9.01117 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.002589 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.508115 B =10811.327462 C =11185.010292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.073 0.927 4 C 0.152 3.848 5 N -0.619 5.619 6 C -0.245 4.245 7 H 0.060 0.940 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.938 3.062 11 H -0.282 1.282 12 H -0.309 1.309 13 H -0.261 1.261 14 C 0.127 3.873 15 C -0.132 4.132 16 C 0.166 3.834 17 H 0.076 0.924 18 N -0.693 5.693 19 C 0.599 3.401 20 O -0.570 6.570 21 C -0.098 4.098 22 C 0.027 3.973 23 O -0.193 6.193 24 C 0.207 3.793 25 C 0.011 3.989 26 C -0.166 4.166 27 C -0.186 4.186 28 C -0.157 4.157 29 N -0.476 5.476 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.261 0.739 36 H 0.050 0.950 37 H 0.031 0.969 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.414 0.586 41 H 0.254 0.746 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.026 7.575 -25.178 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 H 0.091 0.909 4 C 0.027 3.973 5 N -0.343 5.343 6 C -0.374 4.374 7 H 0.078 0.922 8 C -0.227 4.227 9 N -0.600 5.600 10 Si 0.767 3.233 11 H -0.209 1.209 12 H -0.237 1.237 13 H -0.185 1.185 14 C 0.001 3.999 15 C -0.173 4.173 16 C 0.062 3.938 17 H 0.094 0.906 18 N -0.342 5.342 19 C 0.386 3.614 20 O -0.450 6.450 21 C -0.217 4.217 22 C -0.047 4.047 23 O -0.079 6.079 24 C -0.003 4.003 25 C -0.026 4.026 26 C -0.185 4.185 27 C -0.223 4.223 28 C -0.193 4.193 29 N -0.205 5.205 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.270 0.730 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.681 7.206 -24.629 31.741 hybrid contribution 1.133 -1.061 -0.191 1.564 sum -17.547 6.145 -24.820 31.011 Atomic orbital electron populations 1.21698 0.92492 1.02289 1.02642 1.21777 0.97141 0.99856 0.93617 0.90882 1.21139 0.81666 0.98067 0.96398 1.44517 1.02447 1.72064 1.15266 1.18892 0.97529 1.13136 1.07860 0.92191 1.25817 0.96606 1.01083 0.99188 1.69951 1.04682 1.38456 1.46917 0.86038 0.77754 0.82981 0.76506 1.20935 1.23747 1.18516 1.21190 0.96875 0.95344 0.86455 1.22186 0.96302 1.01148 0.97625 1.20809 0.92253 0.97050 0.83703 0.90602 1.45842 1.64158 1.15147 1.09075 1.17029 0.77013 0.85183 0.82217 1.90808 1.52557 1.16587 1.85040 1.21662 1.11721 0.91962 0.96332 1.25745 0.95755 0.95378 0.87854 1.84435 1.62910 1.19258 1.41282 1.26853 0.98640 0.89826 0.84941 1.19943 0.96919 0.83007 1.02775 1.22097 0.99898 0.90434 1.06043 1.23155 1.02093 0.99911 0.97101 1.23104 1.03008 0.97537 0.95685 1.70736 1.15599 1.14203 1.20002 0.91095 0.91784 0.92598 0.94622 0.91312 0.92957 0.93137 0.95152 0.92052 0.92080 0.74920 0.73014 0.85672 0.86181 0.88789 0.87808 0.89384 0.88047 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.02 71.98 0.65 -2.47 16 2 C -0.10 -3.16 2.46 -10.72 -0.03 -3.18 16 3 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.15 5.77 5.80 86.36 0.50 6.27 16 5 N -0.62 -29.50 2.78 -699.93 -1.95 -31.45 16 6 C -0.24 -13.94 10.04 84.03 0.84 -13.10 16 7 H 0.06 3.67 8.05 -2.91 -0.02 3.64 16 8 C -0.03 -1.90 5.23 84.86 0.44 -1.46 16 9 N -0.95 -60.61 13.97 21.65 0.30 -60.31 16 10 Si 0.94 48.06 24.35 68.60 1.67 49.73 16 11 H -0.28 -13.99 6.70 99.48 0.67 -13.32 16 12 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 13 H -0.26 -12.86 6.48 99.48 0.64 -12.22 16 14 C 0.13 5.72 4.17 86.22 0.36 6.08 16 15 C -0.13 -5.01 5.64 30.53 0.17 -4.84 16 16 C 0.17 5.38 1.88 45.02 0.08 5.46 16 17 H 0.08 2.66 7.58 -2.38 -0.02 2.64 16 18 N -0.69 -19.44 4.36 -445.68 -1.94 -21.39 16 19 C 0.60 17.67 7.78 86.66 0.67 18.35 16 20 O -0.57 -20.02 16.55 -4.07 -0.07 -20.09 16 21 C -0.10 -2.37 6.99 40.41 0.28 -2.09 16 22 C 0.03 0.50 11.94 67.32 0.80 1.31 16 23 O -0.19 -3.27 10.73 0.31 0.00 -3.27 16 24 C 0.21 3.49 7.51 88.39 0.66 4.15 16 25 C 0.01 0.10 6.12 29.85 0.18 0.28 16 26 C -0.17 -1.70 5.72 -10.79 -0.06 -1.76 16 27 C -0.19 -1.95 10.18 30.59 0.31 -1.64 16 28 C -0.16 -1.08 10.25 30.59 0.31 -0.77 16 29 N -0.48 -10.52 11.06 -293.03 -3.24 -13.76 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.35 7.36 -2.39 -0.02 1.33 16 32 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 35 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 36 H 0.05 2.51 4.49 -2.39 -0.01 2.50 16 37 H 0.03 1.36 7.01 -2.39 -0.02 1.34 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.41 10.37 8.04 -92.70 -0.74 9.63 16 41 H 0.25 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.12 0.88 7.87 -2.39 -0.02 0.86 16 44 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 45 H 0.10 1.00 8.03 -2.39 -0.02 0.98 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 47 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -73.38 387.06 1.10 -72.28 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.12 Total: 17.65 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.20 Total: 10.59 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -6.83 Total: -126.90 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.67 Total: 49.73 kcal Total: -73.38 1.10 -72.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.679 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds