Wall clock time and date at job start Tue Mar 31 2020 17:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49223 * 2 1 4 4 C 1.53186 * 109.49864 * 120.09551 * 2 1 3 5 5 N 1.46919 * 108.78030 * 174.58511 * 4 2 1 6 6 C 1.36936 * 120.63202 * 126.36535 * 5 4 2 7 7 H 1.07993 * 120.00316 * 332.64021 * 6 5 4 8 8 C 1.38814 * 119.99822 * 152.63063 * 6 5 4 9 9 N 1.31623 * 120.00023 * 159.37430 * 8 6 5 10 10 Si 1.86798 * 120.00131 * 339.38195 * 8 6 5 11 11 H 1.48501 * 109.47430 * 92.92334 * 10 8 6 12 12 H 1.48501 * 109.46994 * 212.92480 * 10 8 6 13 13 H 1.48494 * 109.47081 * 332.92168 * 10 8 6 14 14 C 1.46928 * 118.73882 * 306.39762 * 5 4 2 15 15 C 1.53174 * 108.76725 * 53.60389 * 14 5 4 16 16 C 1.53038 * 109.49610 * 239.93869 * 2 1 3 17 17 H 1.08995 * 109.46215 * 58.67614 * 16 2 1 18 18 N 1.46505 * 109.45955 * 298.69913 * 16 2 1 19 19 C 1.34772 * 119.99832 * 154.97588 * 18 16 2 20 20 O 1.21614 * 120.00142 * 359.97438 * 19 18 16 21 21 C 1.47415 * 120.00195 * 180.02562 * 19 18 16 22 22 C 1.36093 * 126.45408 * 179.97438 * 21 19 18 23 23 O 1.34261 * 106.95114 * 179.78282 * 22 21 19 24 24 C 1.34051 * 108.22486 * 0.38628 * 23 22 21 25 25 C 1.50700 * 125.37738 * 179.87481 * 24 23 22 26 26 C 1.53004 * 109.46745 * 269.69382 * 25 24 23 27 27 C 1.53006 * 117.49731 * 243.74701 * 26 25 24 28 28 C 1.53005 * 117.49905 * 175.09067 * 26 25 24 29 29 N 1.29938 * 109.24663 * 359.60177 * 24 23 22 30 30 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47455 * 300.06298 * 1 2 3 32 32 H 1.09002 * 109.47062 * 60.06690 * 1 2 3 33 33 H 1.09001 * 109.59145 * 294.38166 * 4 2 1 34 34 H 1.09007 * 109.58619 * 54.79715 * 4 2 1 35 35 H 0.97000 * 120.00414 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.58966 * 173.38807 * 14 5 4 37 37 H 1.08994 * 109.58680 * 293.81862 * 14 5 4 38 38 H 1.08998 * 109.47575 * 185.40600 * 15 14 5 39 39 H 1.08997 * 109.49737 * 65.32016 * 15 14 5 40 40 H 0.97001 * 120.00055 * 334.97860 * 18 16 2 41 41 H 1.07995 * 126.51922 * 0.02562 * 22 21 19 42 42 H 1.08999 * 109.47664 * 149.69112 * 25 24 23 43 43 H 1.09001 * 109.47460 * 29.68803 * 25 24 23 44 44 H 1.08998 * 115.55218 * 29.41043 * 26 25 24 45 45 H 1.09004 * 117.49470 * 359.97438 * 27 26 25 46 46 H 1.08998 * 117.50284 * 145.01707 * 27 26 25 47 47 H 1.08995 * 117.49548 * 214.97755 * 28 26 25 48 48 H 1.08998 * 117.49598 * 359.96904 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7241 1.2493 5 7 3.5045 -0.8295 1.1694 6 6 4.2935 -0.3790 2.1940 7 1 3.9445 0.4175 2.8343 8 6 5.5419 -0.9465 2.4097 9 7 6.4551 -0.2881 3.0915 10 14 5.9259 -2.6443 1.7320 11 1 6.5608 -2.5122 0.3961 12 1 6.8541 -3.3469 2.6539 13 1 4.6680 -3.4236 1.6074 14 6 4.1053 -1.4267 -0.0312 15 6 3.5708 -0.6945 -1.2659 16 6 2.0408 -0.7227 -1.2486 17 1 1.6583 -0.2237 -2.1389 18 7 1.5783 -2.1127 -1.2314 19 6 1.4497 -2.7944 -2.3869 20 8 1.7171 -2.2555 -3.4439 21 6 0.9839 -4.1929 -2.3698 22 6 0.8070 -4.9996 -3.4515 23 8 0.3795 -6.1855 -2.9897 24 6 0.2873 -6.1070 -1.6546 25 6 -0.1593 -7.2215 -0.7438 26 6 -1.6752 -7.1453 -0.5502 27 6 -2.1939 -6.8670 0.8621 28 6 -2.3418 -8.2637 0.2534 29 7 0.6494 -4.9200 -1.2694 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7637 -0.1586 2.1389 34 1 1.6052 -1.7220 1.2975 35 1 7.3276 -0.6844 3.2420 36 1 5.1895 -1.3245 0.0133 37 1 3.8375 -2.4817 -0.0875 38 1 3.9336 -1.1890 -2.1670 39 1 3.9159 0.3393 -1.2536 40 1 1.3647 -2.5424 -0.3885 41 1 0.9815 -4.7370 -4.4844 42 1 0.3358 -7.1219 0.2221 43 1 0.1022 -8.1815 -1.1890 44 1 -2.2350 -6.7223 -1.3844 45 1 -1.4551 -6.7386 1.6533 46 1 -3.0951 -6.2613 0.9570 47 1 -3.3403 -8.5763 -0.0519 48 1 -1.7006 -9.0539 0.6437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943796352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:40 Heat of formation + Delta-G solvation = 30.455489 kcal Electronic energy + Delta-G solvation = -29494.538846 eV Core-core repulsion = 25552.550334 eV Total energy + Delta-G solvation = -3941.988512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.60644 -39.93136 -37.99556 -37.81050 -35.02791 -34.40020 -32.56677 -32.05918 -31.52611 -30.28664 -28.19442 -26.38853 -25.46938 -24.07977 -22.74152 -22.27927 -21.91210 -21.50834 -21.08811 -20.40014 -18.80355 -18.34056 -16.99497 -16.84048 -16.67532 -16.10239 -15.62501 -15.08993 -14.95680 -14.67352 -14.56028 -14.27841 -13.83234 -13.77430 -13.53001 -13.44301 -13.40833 -13.16722 -12.49984 -12.24711 -12.16242 -11.87336 -11.73912 -11.63272 -11.50298 -11.36324 -11.25991 -10.95708 -10.79215 -10.64303 -10.51165 -10.41983 -10.21692 -10.03553 -9.95111 -9.66182 -9.47583 -9.20917 -8.78941 -8.54837 -6.96065 -5.94259 -3.29939 0.96968 1.87064 2.33574 3.20250 3.34244 3.34741 3.40659 3.49521 3.53355 3.65933 4.31259 4.48287 4.51739 4.54416 4.66783 4.71035 4.89582 4.94996 5.05506 5.11821 5.20039 5.25728 5.29542 5.35888 5.39526 5.45576 5.47717 5.56354 5.69697 5.74527 5.78768 5.87273 5.90332 5.90845 6.00552 6.07045 6.18675 6.30438 6.38302 6.42934 6.61434 6.66547 6.71666 6.76663 6.95042 7.28980 7.73635 7.96567 8.29927 8.33313 8.94471 9.73026 10.10560 11.21660 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.003631 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.580421 B = 7709.002744 C = 8388.350341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.088 0.912 4 C 0.154 3.846 5 N -0.605 5.605 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.882 3.118 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.128 3.872 15 C -0.147 4.147 16 C 0.158 3.842 17 H 0.081 0.919 18 N -0.694 5.694 19 C 0.599 3.401 20 O -0.544 6.544 21 C -0.066 4.066 22 C 0.006 3.994 23 O -0.197 6.197 24 C 0.200 3.800 25 C 0.007 3.993 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.174 4.174 29 N -0.451 5.451 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.410 0.590 41 H 0.230 0.770 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.921 -13.502 -10.007 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.106 0.894 4 C 0.027 3.973 5 N -0.328 5.328 6 C -0.387 4.387 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.712 3.288 11 H -0.218 1.218 12 H -0.232 1.232 13 H -0.196 1.196 14 C 0.003 3.997 15 C -0.187 4.187 16 C 0.054 3.946 17 H 0.099 0.901 18 N -0.345 5.345 19 C 0.384 3.616 20 O -0.423 6.423 21 C -0.186 4.186 22 C -0.067 4.067 23 O -0.083 6.083 24 C -0.009 4.009 25 C -0.031 4.031 26 C -0.175 4.175 27 C -0.208 4.208 28 C -0.211 4.211 29 N -0.181 5.181 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.247 0.753 41 H 0.246 0.754 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.532 -12.893 -9.995 23.947 hybrid contribution 0.368 -1.318 -0.768 1.569 sum -17.163 -14.211 -10.762 24.746 Atomic orbital electron populations 1.21767 0.95389 1.01529 1.01347 1.21942 0.94935 1.00963 0.96117 0.89388 1.20946 0.84510 0.96643 0.95159 1.44354 1.00619 1.71935 1.15904 1.18910 0.97826 1.13905 1.08071 0.89627 1.25254 0.96433 0.97975 0.97753 1.69835 1.04410 1.37035 1.43842 0.86972 0.77684 0.87145 0.76960 1.21773 1.23227 1.19583 1.21279 0.97978 0.94601 0.85859 1.22399 0.94578 1.02413 0.99281 1.20987 0.94597 0.80297 0.98686 0.90095 1.45988 1.65492 1.14110 1.08901 1.16731 0.77511 0.82905 0.84503 1.90797 1.51962 1.68836 1.30692 1.21928 1.09602 0.97691 0.89406 1.25258 0.98789 0.81753 1.00931 1.84379 1.64794 1.34854 1.24310 1.26121 0.99938 0.95501 0.79378 1.19719 0.94305 0.92373 0.96688 1.22133 0.93661 1.05159 0.96532 1.23117 1.03541 0.98622 0.95543 1.23029 1.02091 0.92291 1.03691 1.70817 1.14698 1.02817 1.29766 0.92967 0.92452 0.93133 0.91450 0.96226 0.92795 0.91037 0.95806 0.92215 0.90546 0.75277 0.75367 0.87119 0.88240 0.87524 0.88060 0.88560 0.88508 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 37.16 0.34 -1.52 16 2 C -0.12 -1.89 2.67 -90.50 -0.24 -2.14 16 3 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.15 2.92 5.50 -3.72 -0.02 2.90 16 5 N -0.60 -14.21 2.77 -172.34 -0.48 -14.68 16 6 C -0.26 -7.19 10.04 -15.06 -0.15 -7.35 16 7 H 0.09 2.52 8.05 -52.49 -0.42 2.10 16 8 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 9 N -0.91 -27.98 13.97 55.49 0.78 -27.20 16 10 Si 0.88 22.89 24.35 -169.99 -4.14 18.76 16 11 H -0.29 -7.39 6.62 56.52 0.37 -7.02 16 12 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 13 H -0.27 -6.95 6.63 56.52 0.37 -6.57 16 14 C 0.13 2.88 3.94 -3.72 -0.01 2.87 16 15 C -0.15 -2.78 5.77 -26.62 -0.15 -2.94 16 16 C 0.16 2.63 2.21 -67.89 -0.15 2.48 16 17 H 0.08 1.33 7.57 -51.93 -0.39 0.93 16 18 N -0.69 -11.33 3.59 -54.84 -0.20 -11.52 16 19 C 0.60 9.83 7.78 -12.53 -0.10 9.74 16 20 O -0.54 -9.91 16.55 5.27 0.09 -9.82 16 21 C -0.07 -0.95 6.99 -83.02 -0.58 -1.53 16 22 C 0.01 0.07 11.95 29.96 0.36 0.43 16 23 O -0.20 -2.17 10.73 6.50 0.07 -2.10 16 24 C 0.20 2.25 7.51 -13.08 -0.10 2.15 16 25 C 0.01 0.05 6.12 -27.88 -0.17 -0.12 16 26 C -0.16 -1.11 5.72 -90.61 -0.52 -1.63 16 27 C -0.17 -1.19 10.18 -26.69 -0.27 -1.46 16 28 C -0.17 -0.98 10.25 -26.69 -0.27 -1.26 16 29 N -0.45 -6.31 11.06 -7.65 -0.08 -6.40 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.28 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 34 H 0.02 0.37 6.64 -51.93 -0.34 0.02 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.07 1.78 4.49 -51.93 -0.23 1.55 16 37 H 0.02 0.55 6.67 -51.93 -0.35 0.20 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.41 6.74 6.46 -40.82 -0.26 6.48 16 41 H 0.23 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.11 0.83 7.88 -51.93 -0.41 0.42 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.11 0.82 8.07 -51.93 -0.42 0.40 16 45 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -33.23 383.28 -7.80 -41.03 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.47 Total: 4.89 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.14 Total: 1.27 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.02 Total: -59.81 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.16 Total: -11.92 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.23 -7.80 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.486 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds