Wall clock time and date at job start Tue Mar 31 2020 17:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49223 * 2 1 4 4 C 1.53186 * 109.49864 * 120.09551 * 2 1 3 5 5 N 1.46919 * 108.78030 * 174.58511 * 4 2 1 6 6 C 1.36936 * 120.63202 * 126.36535 * 5 4 2 7 7 H 1.07993 * 120.00316 * 332.64021 * 6 5 4 8 8 C 1.38814 * 119.99822 * 152.63063 * 6 5 4 9 9 N 1.31623 * 120.00023 * 159.37430 * 8 6 5 10 10 Si 1.86798 * 120.00131 * 339.38195 * 8 6 5 11 11 H 1.48501 * 109.47430 * 92.92334 * 10 8 6 12 12 H 1.48501 * 109.46994 * 212.92480 * 10 8 6 13 13 H 1.48494 * 109.47081 * 332.92168 * 10 8 6 14 14 C 1.46928 * 118.73882 * 306.39762 * 5 4 2 15 15 C 1.53174 * 108.76725 * 53.60389 * 14 5 4 16 16 C 1.53038 * 109.49610 * 239.93869 * 2 1 3 17 17 H 1.08995 * 109.46215 * 58.67614 * 16 2 1 18 18 N 1.46505 * 109.45955 * 298.69913 * 16 2 1 19 19 C 1.34772 * 119.99832 * 154.97588 * 18 16 2 20 20 O 1.21614 * 120.00142 * 359.97438 * 19 18 16 21 21 C 1.47415 * 120.00195 * 180.02562 * 19 18 16 22 22 C 1.36093 * 126.45408 * 179.97438 * 21 19 18 23 23 O 1.34261 * 106.95114 * 179.78282 * 22 21 19 24 24 C 1.34051 * 108.22486 * 0.38628 * 23 22 21 25 25 C 1.50700 * 125.37738 * 179.87481 * 24 23 22 26 26 C 1.53004 * 109.46745 * 269.69382 * 25 24 23 27 27 C 1.53006 * 117.49731 * 243.74701 * 26 25 24 28 28 C 1.53005 * 117.49905 * 175.09067 * 26 25 24 29 29 N 1.29938 * 109.24663 * 359.60177 * 24 23 22 30 30 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47455 * 300.06298 * 1 2 3 32 32 H 1.09002 * 109.47062 * 60.06690 * 1 2 3 33 33 H 1.09001 * 109.59145 * 294.38166 * 4 2 1 34 34 H 1.09007 * 109.58619 * 54.79715 * 4 2 1 35 35 H 0.97000 * 120.00414 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.58966 * 173.38807 * 14 5 4 37 37 H 1.08994 * 109.58680 * 293.81862 * 14 5 4 38 38 H 1.08998 * 109.47575 * 185.40600 * 15 14 5 39 39 H 1.08997 * 109.49737 * 65.32016 * 15 14 5 40 40 H 0.97001 * 120.00055 * 334.97860 * 18 16 2 41 41 H 1.07995 * 126.51922 * 0.02562 * 22 21 19 42 42 H 1.08999 * 109.47664 * 149.69112 * 25 24 23 43 43 H 1.09001 * 109.47460 * 29.68803 * 25 24 23 44 44 H 1.08998 * 115.55218 * 29.41043 * 26 25 24 45 45 H 1.09004 * 117.49470 * 359.97438 * 27 26 25 46 46 H 1.08998 * 117.50284 * 145.01707 * 27 26 25 47 47 H 1.08995 * 117.49548 * 214.97755 * 28 26 25 48 48 H 1.08998 * 117.49598 * 359.96904 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7241 1.2493 5 7 3.5045 -0.8295 1.1694 6 6 4.2935 -0.3790 2.1940 7 1 3.9445 0.4175 2.8343 8 6 5.5419 -0.9465 2.4097 9 7 6.4551 -0.2881 3.0915 10 14 5.9259 -2.6443 1.7320 11 1 6.5608 -2.5122 0.3961 12 1 6.8541 -3.3469 2.6539 13 1 4.6680 -3.4236 1.6074 14 6 4.1053 -1.4267 -0.0312 15 6 3.5708 -0.6945 -1.2659 16 6 2.0408 -0.7227 -1.2486 17 1 1.6583 -0.2237 -2.1389 18 7 1.5783 -2.1127 -1.2314 19 6 1.4497 -2.7944 -2.3869 20 8 1.7171 -2.2555 -3.4439 21 6 0.9839 -4.1929 -2.3698 22 6 0.8070 -4.9996 -3.4515 23 8 0.3795 -6.1855 -2.9897 24 6 0.2873 -6.1070 -1.6546 25 6 -0.1593 -7.2215 -0.7438 26 6 -1.6752 -7.1453 -0.5502 27 6 -2.1939 -6.8670 0.8621 28 6 -2.3418 -8.2637 0.2534 29 7 0.6494 -4.9200 -1.2694 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7637 -0.1586 2.1389 34 1 1.6052 -1.7220 1.2975 35 1 7.3276 -0.6844 3.2420 36 1 5.1895 -1.3245 0.0133 37 1 3.8375 -2.4817 -0.0875 38 1 3.9336 -1.1890 -2.1670 39 1 3.9159 0.3393 -1.2536 40 1 1.3647 -2.5424 -0.3885 41 1 0.9815 -4.7370 -4.4844 42 1 0.3358 -7.1219 0.2221 43 1 0.1022 -8.1815 -1.1890 44 1 -2.2350 -6.7223 -1.3844 45 1 -1.4551 -6.7386 1.6533 46 1 -3.0951 -6.2613 0.9570 47 1 -3.3403 -8.5763 -0.0519 48 1 -1.7006 -9.0539 0.6437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943796352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:39 Heat of formation + Delta-G solvation = 7.422198 kcal Electronic energy + Delta-G solvation = -29495.537644 eV Core-core repulsion = 25552.550334 eV Total energy + Delta-G solvation = -3942.987310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.51097 -41.28782 -39.30870 -38.48211 -36.15697 -35.95027 -34.01669 -33.41429 -32.88769 -31.89546 -28.99972 -27.82917 -27.19542 -25.31623 -23.61977 -23.22449 -23.20690 -22.93277 -21.98646 -21.29527 -20.28129 -19.41179 -18.75356 -17.89244 -17.71678 -17.28077 -16.84294 -16.60583 -16.35528 -15.92360 -15.70398 -15.25379 -15.20689 -15.06721 -14.91095 -14.76862 -14.52443 -14.23524 -13.91603 -13.77381 -13.49403 -13.23540 -12.94703 -12.84975 -12.78324 -12.33898 -12.30746 -12.28612 -12.12741 -11.97218 -11.91195 -11.71234 -11.46772 -11.41399 -11.29419 -11.23441 -10.90299 -10.74518 -10.23144 -9.97361 -8.94929 -8.19072 -5.49839 0.02845 0.89787 1.25373 1.35580 1.44375 1.50598 2.04811 2.19862 2.37883 2.75766 2.91758 3.01697 3.30271 3.58119 3.71734 3.75292 3.79683 3.89570 4.00875 4.04320 4.10366 4.19093 4.25599 4.38337 4.43295 4.51960 4.54154 4.58240 4.67414 4.70305 4.73112 4.84200 4.85991 4.86421 4.90418 4.98728 5.01150 5.09532 5.11350 5.18707 5.26297 5.26384 5.30576 5.39703 5.52679 5.84592 6.11293 6.27956 6.55859 6.88326 7.04374 7.59495 8.00863 9.00729 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.003631 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.580421 B = 7709.002744 C = 8388.350341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.150 3.850 5 N -0.616 5.616 6 C -0.243 4.243 7 H 0.060 0.940 8 C -0.030 4.030 9 N -0.954 5.954 10 Si 0.940 3.060 11 H -0.285 1.285 12 H -0.309 1.309 13 H -0.265 1.265 14 C 0.130 3.870 15 C -0.139 4.139 16 C 0.165 3.835 17 H 0.091 0.909 18 N -0.694 5.694 19 C 0.599 3.401 20 O -0.567 6.567 21 C -0.102 4.102 22 C 0.029 3.971 23 O -0.192 6.192 24 C 0.207 3.793 25 C 0.008 3.992 26 C -0.162 4.162 27 C -0.185 4.185 28 C -0.156 4.156 29 N -0.481 5.481 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.045 0.955 37 H 0.023 0.977 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.409 0.591 41 H 0.258 0.742 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.047 -15.449 -11.578 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 H 0.102 0.898 4 C 0.026 3.974 5 N -0.340 5.340 6 C -0.372 4.372 7 H 0.078 0.922 8 C -0.225 4.225 9 N -0.600 5.600 10 Si 0.770 3.230 11 H -0.213 1.213 12 H -0.238 1.238 13 H -0.190 1.190 14 C 0.005 3.995 15 C -0.179 4.179 16 C 0.060 3.940 17 H 0.109 0.891 18 N -0.344 5.344 19 C 0.386 3.614 20 O -0.447 6.447 21 C -0.221 4.221 22 C -0.045 4.045 23 O -0.078 6.078 24 C -0.003 4.003 25 C -0.030 4.030 26 C -0.181 4.181 27 C -0.222 4.222 28 C -0.193 4.193 29 N -0.211 5.211 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.246 0.754 41 H 0.274 0.726 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.124 0.876 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.706 -14.851 -11.583 27.259 hybrid contribution 0.939 -0.708 -0.289 1.211 sum -18.767 -15.558 -11.872 27.114 Atomic orbital electron populations 1.21689 0.92620 1.02087 1.02696 1.21803 0.97065 0.99993 0.93923 0.89762 1.21136 0.81817 0.97641 0.96843 1.44458 1.02284 1.71913 1.15328 1.18899 0.97897 1.12455 1.07976 0.92193 1.25793 0.96713 1.00876 0.99083 1.69945 1.04975 1.38510 1.46592 0.86020 0.77417 0.83238 0.76324 1.21255 1.23780 1.19008 1.21191 0.96509 0.94875 0.86892 1.22293 0.96482 1.01717 0.97413 1.20893 0.92753 0.80957 0.99363 0.89094 1.45945 1.65570 1.13882 1.09036 1.16971 0.76801 0.83638 0.83987 1.90774 1.53056 1.69625 1.31235 1.21776 1.12309 0.97311 0.90729 1.25773 0.96190 0.81083 1.01450 1.84425 1.64524 1.34516 1.24310 1.26791 0.98368 0.95448 0.79684 1.19939 0.94576 0.92263 0.96193 1.22074 0.93253 1.06457 0.96294 1.23162 1.03523 1.00081 0.95480 1.23116 1.02554 0.91749 1.01895 1.70773 1.16173 1.03963 1.30210 0.92785 0.91235 0.91703 0.91682 0.95090 0.92983 0.93687 0.95954 0.91974 0.90693 0.75362 0.72621 0.87009 0.85757 0.88160 0.88486 0.88758 0.87573 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.05 71.98 0.65 -2.46 16 2 C -0.11 -3.23 2.67 -10.72 -0.03 -3.26 16 3 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.15 5.57 5.50 86.36 0.48 6.04 16 5 N -0.62 -28.81 2.77 -699.17 -1.94 -30.74 16 6 C -0.24 -13.71 10.04 84.03 0.84 -12.87 16 7 H 0.06 3.64 8.05 -2.91 -0.02 3.62 16 8 C -0.03 -1.76 5.23 84.86 0.44 -1.31 16 9 N -0.95 -60.39 13.97 21.65 0.30 -60.08 16 10 Si 0.94 48.21 24.35 68.60 1.67 49.88 16 11 H -0.29 -14.24 6.62 99.48 0.66 -13.59 16 12 H -0.31 -15.96 7.11 99.48 0.71 -15.26 16 13 H -0.27 -13.19 6.63 99.48 0.66 -12.53 16 14 C 0.13 5.80 3.94 86.36 0.34 6.14 16 15 C -0.14 -5.15 5.77 30.67 0.18 -4.97 16 16 C 0.16 5.21 2.21 45.02 0.10 5.31 16 17 H 0.09 2.78 7.57 -2.39 -0.02 2.76 16 18 N -0.69 -21.61 3.59 -445.68 -1.60 -23.21 16 19 C 0.60 18.82 7.78 86.66 0.67 19.50 16 20 O -0.57 -19.75 16.55 -4.07 -0.07 -19.81 16 21 C -0.10 -2.78 6.99 40.40 0.28 -2.50 16 22 C 0.03 0.60 11.95 67.32 0.80 1.41 16 23 O -0.19 -3.72 10.73 0.33 0.00 -3.72 16 24 C 0.21 4.23 7.51 88.39 0.66 4.90 16 25 C 0.01 0.10 6.12 29.85 0.18 0.29 16 26 C -0.16 -1.97 5.72 -10.79 -0.06 -2.04 16 27 C -0.19 -2.31 10.18 30.62 0.31 -2.00 16 28 C -0.16 -1.37 10.25 30.62 0.31 -1.05 16 29 N -0.48 -12.78 11.06 -293.03 -3.24 -16.02 16 30 H 0.05 1.26 7.54 -2.39 -0.02 1.24 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 34 H 0.03 1.10 6.64 -2.38 -0.02 1.09 16 35 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.04 2.24 4.49 -2.39 -0.01 2.23 16 37 H 0.02 1.01 6.67 -2.39 -0.02 0.99 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.41 12.90 6.46 -92.71 -0.60 12.30 16 41 H 0.26 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.11 1.46 7.88 -2.39 -0.02 1.44 16 43 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.36 8.07 -2.39 -0.02 1.34 16 45 H 0.10 1.28 8.03 -2.38 -0.02 1.26 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -72.38 383.28 1.59 -70.80 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.28 Total: 21.80 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.17 Total: 11.12 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -6.47 Total: -130.06 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.67 Total: 49.88 kcal Total: -72.38 1.59 -70.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943796352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.219 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds