Wall clock time and date at job start Tue Mar 31 2020 17:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49834 * 2 1 4 4 C 1.53195 * 109.49255 * 120.08734 * 2 1 3 5 5 N 1.46921 * 108.77447 * 174.58457 * 4 2 1 6 6 C 1.36938 * 120.63017 * 126.36882 * 5 4 2 7 7 H 1.07993 * 120.00479 * 331.84181 * 6 5 4 8 8 C 1.38814 * 120.00043 * 151.83323 * 6 5 4 9 9 N 1.31627 * 119.99987 * 343.08763 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 163.08155 * 8 6 5 11 11 H 1.48489 * 109.47406 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.46874 * 120.00550 * 10 8 6 13 13 H 1.48499 * 109.47144 * 240.00045 * 10 8 6 14 14 C 1.46926 * 118.74251 * 306.39841 * 5 4 2 15 15 C 1.53163 * 108.76754 * 53.60327 * 14 5 4 16 16 C 1.53036 * 109.49850 * 239.92530 * 2 1 3 17 17 H 1.08992 * 109.45954 * 298.70510 * 16 2 1 18 18 N 1.46500 * 109.45823 * 58.68376 * 16 2 1 19 19 C 1.34779 * 119.99759 * 205.02984 * 18 16 2 20 20 O 1.21615 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.47417 * 120.00047 * 179.97438 * 19 18 16 22 22 C 1.36088 * 126.44983 * 179.68315 * 21 19 18 23 23 O 1.34264 * 106.95031 * 179.90040 * 22 21 19 24 24 C 1.34052 * 108.22422 * 0.36800 * 23 22 21 25 25 C 1.50701 * 125.37589 * 179.73670 * 24 23 22 26 26 C 1.53781 * 113.61365 * 37.53516 * 25 24 23 27 27 C 1.53784 * 87.07797 * 220.01911 * 26 25 24 28 28 C 1.53780 * 87.08227 * 25.43590 * 27 26 25 29 29 N 1.29932 * 109.24351 * 359.76317 * 24 23 22 30 30 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47313 * 300.07260 * 1 2 3 32 32 H 1.09003 * 109.46506 * 60.07165 * 1 2 3 33 33 H 1.08996 * 109.59042 * 294.37352 * 4 2 1 34 34 H 1.09006 * 109.58699 * 54.80475 * 4 2 1 35 35 H 0.96996 * 119.99377 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.59142 * 173.39507 * 14 5 4 37 37 H 1.09009 * 109.58156 * 293.81923 * 14 5 4 38 38 H 1.09007 * 109.47515 * 185.40727 * 15 14 5 39 39 H 1.09001 * 109.49969 * 65.32730 * 15 14 5 40 40 H 0.97003 * 120.00246 * 25.01912 * 18 16 2 41 41 H 1.07997 * 126.52690 * 0.03050 * 22 21 19 42 42 H 1.08996 * 112.84954 * 168.84355 * 25 24 23 43 43 H 1.08997 * 113.61591 * 334.56480 * 26 25 24 44 44 H 1.08996 * 113.61299 * 105.47354 * 26 25 24 45 45 H 1.08999 * 113.61636 * 270.88681 * 27 26 25 46 46 H 1.09000 * 113.61235 * 139.98361 * 27 26 25 47 47 H 1.09007 * 113.61086 * 220.02403 * 28 27 26 48 48 H 1.08993 * 113.62080 * 89.11513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7240 1.2496 5 7 3.5044 -0.8294 1.1696 6 6 4.2934 -0.3789 2.1942 7 1 3.9499 0.4264 2.8264 8 6 5.5348 -0.9574 2.4203 9 7 5.8210 -2.1288 1.8924 10 14 6.7993 -0.0736 3.4736 11 1 6.2356 1.2165 3.9456 12 1 7.1468 -0.9193 4.6439 13 1 8.0205 0.1841 2.6691 14 6 4.1052 -1.4267 -0.0308 15 6 3.5709 -0.6948 -1.2656 16 6 2.0408 -0.7229 -1.2484 17 1 1.6967 -1.7570 -1.2354 18 7 1.5269 -0.0523 -2.4452 19 6 1.3983 -0.7375 -3.5987 20 8 1.7093 -1.9123 -3.6461 21 6 0.8807 -0.0629 -4.8030 22 6 0.7037 -0.6232 -6.0305 23 8 0.2135 0.3362 -6.8316 24 6 0.0994 1.4632 -6.1148 25 6 -0.4076 2.7825 -6.6380 26 6 -1.5652 2.6436 -7.6407 27 6 -0.9019 3.7756 -8.4430 28 6 0.4273 3.3461 -7.7999 29 7 0.4954 1.2386 -4.8979 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3632 0.5127 -0.8907 33 1 1.7637 -0.1583 2.1389 34 1 1.6052 -1.7219 1.2978 35 1 6.6886 -2.5328 2.0502 36 1 5.1895 -1.3247 0.0138 37 1 3.8374 -2.4819 -0.0869 38 1 3.9338 -1.1895 -2.1666 39 1 3.9160 0.3390 -1.2535 40 1 1.2791 0.8847 -2.4075 41 1 0.9152 -1.6455 -6.3070 42 1 -0.5986 3.5066 -5.8461 43 1 -1.5777 1.6873 -8.1635 44 1 -2.5365 2.9134 -7.2263 45 1 -1.2293 4.7717 -8.1452 46 1 -0.9343 3.6232 -9.5218 47 1 1.0645 4.1831 -7.5138 48 1 0.9596 2.5818 -8.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944046844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:21 Heat of formation + Delta-G solvation = 19.133092 kcal Electronic energy + Delta-G solvation = -28705.903252 eV Core-core repulsion = 24763.423764 eV Total energy + Delta-G solvation = -3942.479488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.66623 -39.69172 -39.07249 -37.58825 -35.05989 -34.48477 -32.56948 -31.20052 -30.92032 -29.73765 -26.57226 -26.18885 -25.90647 -25.43667 -23.83710 -22.17164 -21.78787 -20.96126 -20.58785 -19.81395 -19.18199 -18.07491 -17.01492 -16.85447 -16.58589 -16.08302 -15.84675 -15.56302 -14.79491 -14.58183 -14.17079 -13.90261 -13.74592 -13.50553 -13.30937 -13.19493 -13.06668 -12.91854 -12.77009 -12.60174 -12.07963 -11.55143 -11.48977 -11.42146 -11.27216 -11.06342 -11.03783 -11.00993 -10.96935 -10.80100 -10.62648 -10.32261 -10.18873 -10.07763 -9.93111 -9.76076 -9.47318 -9.19780 -8.65341 -8.39765 -6.65727 -5.76355 -3.19376 0.94989 1.82481 2.30295 3.22013 3.36980 3.38994 3.46639 3.48807 3.62139 3.99703 4.08624 4.30604 4.38465 4.51131 4.65520 4.79033 5.08937 5.16659 5.17612 5.20251 5.34060 5.35063 5.40318 5.42969 5.43236 5.43519 5.54310 5.55892 5.63931 5.82209 5.88726 5.94847 6.03276 6.14888 6.28829 6.32078 6.40718 6.49625 6.63827 6.70537 6.80943 6.94134 6.99576 7.26578 7.40139 7.69580 7.77103 7.82263 8.34712 8.47329 9.23182 9.86504 10.43311 11.32205 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.002309 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.396851 B =12121.019867 C =12252.774055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.156 3.844 17 H 0.083 0.917 18 N -0.701 5.701 19 C 0.596 3.404 20 O -0.537 6.537 21 C -0.065 4.065 22 C 0.006 3.994 23 O -0.196 6.196 24 C 0.205 3.795 25 C -0.020 4.020 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.131 4.131 29 N -0.458 5.458 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.021 0.979 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.403 0.597 41 H 0.231 0.769 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 10.340 -20.781 27.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.048 3.952 15 C -0.188 4.188 16 C 0.053 3.947 17 H 0.102 0.898 18 N -0.350 5.350 19 C 0.380 3.620 20 O -0.415 6.415 21 C -0.185 4.185 22 C -0.068 4.068 23 O -0.082 6.082 24 C -0.004 4.004 25 C -0.039 4.039 26 C -0.171 4.171 27 C -0.177 4.177 28 C -0.169 4.169 29 N -0.188 5.188 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.238 0.762 41 H 0.247 0.753 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.855 9.842 -20.256 26.978 hybrid contribution 0.689 0.198 0.056 0.719 sum -14.166 10.039 -20.200 26.637 Atomic orbital electron populations 1.21777 0.95774 1.01546 1.00939 1.21971 0.94567 1.00657 0.96328 0.90990 1.20897 0.85951 0.96619 0.93729 1.44110 0.99310 1.71452 1.16632 1.19210 0.98490 1.11861 1.08637 0.91606 1.25068 0.99989 0.95365 0.99277 1.70049 1.22047 1.14489 1.47948 0.86234 0.81700 0.79177 0.79716 1.20267 1.21746 1.21589 1.20759 0.99421 0.93107 0.81949 1.22586 0.93736 1.01645 1.00824 1.21138 0.94675 0.96871 0.81995 0.89844 1.46115 1.64315 1.14721 1.09861 1.16754 0.77946 0.85582 0.81685 1.90837 1.51053 1.15196 1.84409 1.21988 1.08992 0.90966 0.96554 1.25300 0.98141 0.94560 0.88768 1.84328 1.63261 1.19135 1.41456 1.26047 0.99883 0.89141 0.85325 1.21314 0.97745 0.87156 0.97668 1.23026 0.97342 1.00246 0.96471 1.22823 0.95769 0.98792 1.00296 1.23028 0.97096 1.01304 0.95476 1.70774 1.14635 1.14754 1.18598 0.92927 0.92693 0.93381 0.92327 0.96138 0.93655 0.89222 0.96078 0.92781 0.92574 0.76172 0.75286 0.84904 0.89208 0.90239 0.89412 0.90590 0.90113 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 2 C -0.11 -1.98 2.46 -90.50 -0.22 -2.20 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.16 3.25 5.80 -3.71 -0.02 3.23 16 5 N -0.59 -14.98 2.99 -172.34 -0.52 -15.50 16 6 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 7 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 8 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 9 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 10 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.17 4.30 5.30 -3.73 -0.02 4.28 16 15 C -0.15 -3.05 5.65 -26.63 -0.15 -3.20 16 16 C 0.16 2.85 1.88 -67.89 -0.13 2.72 16 17 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 18 N -0.70 -11.16 4.36 -54.85 -0.24 -11.40 16 19 C 0.60 9.83 7.78 -12.52 -0.10 9.73 16 20 O -0.54 -10.37 16.55 5.26 0.09 -10.28 16 21 C -0.06 -0.90 6.99 -83.02 -0.58 -1.48 16 22 C 0.01 0.07 11.95 29.96 0.36 0.42 16 23 O -0.20 -2.02 10.39 6.49 0.07 -1.95 16 24 C 0.21 2.13 7.33 -13.08 -0.10 2.03 16 25 C -0.02 -0.13 4.29 -90.96 -0.39 -0.52 16 26 C -0.13 -0.68 7.63 -25.92 -0.20 -0.88 16 27 C -0.14 -0.57 8.08 -25.92 -0.21 -0.78 16 28 C -0.13 -0.72 7.63 -25.92 -0.20 -0.92 16 29 N -0.46 -5.90 11.06 -7.65 -0.08 -5.99 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.63 7.36 -51.93 -0.38 0.25 16 33 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 37 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.40 5.83 8.04 -40.82 -0.33 5.50 16 41 H 0.23 1.93 8.06 -52.49 -0.42 1.50 16 42 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.51 7.82 -51.93 -0.41 0.10 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -32.50 388.58 -8.79 -41.28 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.70 Total: 3.44 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.85 Total: 3.62 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.22 Total: -58.79 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.15 Total: -12.24 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.50 -8.79 -41.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944046844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds