Wall clock time and date at job start Tue Mar 31 2020 17:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49834 * 2 1 4 4 C 1.53195 * 109.49255 * 120.08734 * 2 1 3 5 5 N 1.46921 * 108.77447 * 174.58457 * 4 2 1 6 6 C 1.36938 * 120.63017 * 126.36882 * 5 4 2 7 7 H 1.07993 * 120.00479 * 331.84181 * 6 5 4 8 8 C 1.38814 * 120.00043 * 151.83323 * 6 5 4 9 9 N 1.31627 * 119.99987 * 343.08763 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 163.08155 * 8 6 5 11 11 H 1.48489 * 109.47406 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.46874 * 120.00550 * 10 8 6 13 13 H 1.48499 * 109.47144 * 240.00045 * 10 8 6 14 14 C 1.46926 * 118.74251 * 306.39841 * 5 4 2 15 15 C 1.53163 * 108.76754 * 53.60327 * 14 5 4 16 16 C 1.53036 * 109.49850 * 239.92530 * 2 1 3 17 17 H 1.08992 * 109.45954 * 298.70510 * 16 2 1 18 18 N 1.46500 * 109.45823 * 58.68376 * 16 2 1 19 19 C 1.34779 * 119.99759 * 205.02984 * 18 16 2 20 20 O 1.21615 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.47417 * 120.00047 * 179.97438 * 19 18 16 22 22 C 1.36088 * 126.44983 * 179.68315 * 21 19 18 23 23 O 1.34264 * 106.95031 * 179.90040 * 22 21 19 24 24 C 1.34052 * 108.22422 * 0.36800 * 23 22 21 25 25 C 1.50701 * 125.37589 * 179.73670 * 24 23 22 26 26 C 1.53781 * 113.61365 * 37.53516 * 25 24 23 27 27 C 1.53784 * 87.07797 * 220.01911 * 26 25 24 28 28 C 1.53780 * 87.08227 * 25.43590 * 27 26 25 29 29 N 1.29932 * 109.24351 * 359.76317 * 24 23 22 30 30 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47313 * 300.07260 * 1 2 3 32 32 H 1.09003 * 109.46506 * 60.07165 * 1 2 3 33 33 H 1.08996 * 109.59042 * 294.37352 * 4 2 1 34 34 H 1.09006 * 109.58699 * 54.80475 * 4 2 1 35 35 H 0.96996 * 119.99377 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.59142 * 173.39507 * 14 5 4 37 37 H 1.09009 * 109.58156 * 293.81923 * 14 5 4 38 38 H 1.09007 * 109.47515 * 185.40727 * 15 14 5 39 39 H 1.09001 * 109.49969 * 65.32730 * 15 14 5 40 40 H 0.97003 * 120.00246 * 25.01912 * 18 16 2 41 41 H 1.07997 * 126.52690 * 0.03050 * 22 21 19 42 42 H 1.08996 * 112.84954 * 168.84355 * 25 24 23 43 43 H 1.08997 * 113.61591 * 334.56480 * 26 25 24 44 44 H 1.08996 * 113.61299 * 105.47354 * 26 25 24 45 45 H 1.08999 * 113.61636 * 270.88681 * 27 26 25 46 46 H 1.09000 * 113.61235 * 139.98361 * 27 26 25 47 47 H 1.09007 * 113.61086 * 220.02403 * 28 27 26 48 48 H 1.08993 * 113.62080 * 89.11513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7240 1.2496 5 7 3.5044 -0.8294 1.1696 6 6 4.2934 -0.3789 2.1942 7 1 3.9499 0.4264 2.8264 8 6 5.5348 -0.9574 2.4203 9 7 5.8210 -2.1288 1.8924 10 14 6.7993 -0.0736 3.4736 11 1 6.2356 1.2165 3.9456 12 1 7.1468 -0.9193 4.6439 13 1 8.0205 0.1841 2.6691 14 6 4.1052 -1.4267 -0.0308 15 6 3.5709 -0.6948 -1.2656 16 6 2.0408 -0.7229 -1.2484 17 1 1.6967 -1.7570 -1.2354 18 7 1.5269 -0.0523 -2.4452 19 6 1.3983 -0.7375 -3.5987 20 8 1.7093 -1.9123 -3.6461 21 6 0.8807 -0.0629 -4.8030 22 6 0.7037 -0.6232 -6.0305 23 8 0.2135 0.3362 -6.8316 24 6 0.0994 1.4632 -6.1148 25 6 -0.4076 2.7825 -6.6380 26 6 -1.5652 2.6436 -7.6407 27 6 -0.9019 3.7756 -8.4430 28 6 0.4273 3.3461 -7.7999 29 7 0.4954 1.2386 -4.8979 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3632 0.5127 -0.8907 33 1 1.7637 -0.1583 2.1389 34 1 1.6052 -1.7219 1.2978 35 1 6.6886 -2.5328 2.0502 36 1 5.1895 -1.3247 0.0138 37 1 3.8374 -2.4819 -0.0869 38 1 3.9338 -1.1895 -2.1666 39 1 3.9160 0.3390 -1.2535 40 1 1.2791 0.8847 -2.4075 41 1 0.9152 -1.6455 -6.3070 42 1 -0.5986 3.5066 -5.8461 43 1 -1.5777 1.6873 -8.1635 44 1 -2.5365 2.9134 -7.2263 45 1 -1.2293 4.7717 -8.1452 46 1 -0.9343 3.6232 -9.5218 47 1 1.0645 4.1831 -7.5138 48 1 0.9596 2.5818 -8.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944046844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:20 Heat of formation + Delta-G solvation = -2.717384 kcal Electronic energy + Delta-G solvation = -28706.850760 eV Core-core repulsion = 24763.423764 eV Total energy + Delta-G solvation = -3943.426996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.54133 -41.08334 -39.55219 -39.16893 -36.26587 -35.95809 -34.17516 -32.96513 -32.00778 -31.36213 -27.45735 -27.37018 -26.97286 -26.57679 -25.23365 -23.61581 -22.72394 -22.57358 -21.72053 -21.11013 -20.17720 -19.11517 -18.65732 -17.88912 -17.68365 -17.34427 -16.76200 -16.62360 -16.15962 -15.98614 -15.63256 -15.56652 -15.17368 -14.79054 -14.68531 -14.57702 -14.21648 -13.75669 -13.63795 -13.52427 -13.33202 -13.08074 -13.03736 -12.76584 -12.64640 -12.42167 -12.31752 -12.11283 -12.04236 -11.94939 -11.93154 -11.70903 -11.60713 -11.46250 -11.41307 -11.36100 -11.13508 -10.59191 -10.20257 -9.94563 -8.72583 -7.88616 -5.35134 0.01317 0.88046 1.46076 1.47825 1.49154 1.58755 2.00997 2.17628 2.50455 2.76188 3.27098 3.54952 3.55620 3.64194 3.66624 3.73530 3.79993 3.92796 3.99092 4.05270 4.12579 4.33991 4.42941 4.55157 4.56844 4.67780 4.69450 4.73393 4.79946 4.82598 4.85120 4.88348 4.96813 4.97996 5.06092 5.07023 5.10599 5.12605 5.15101 5.25728 5.35210 5.45574 5.48060 5.51665 5.62436 5.67517 6.27457 6.37208 6.56806 7.06399 7.11801 7.82148 8.35427 9.18674 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.002309 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.396851 B =12121.019867 C =12252.774055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.151 3.849 5 N -0.610 5.610 6 C -0.260 4.260 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.293 1.293 13 H -0.292 1.292 14 C 0.184 3.816 15 C -0.132 4.132 16 C 0.168 3.832 17 H 0.064 0.936 18 N -0.692 5.692 19 C 0.597 3.403 20 O -0.572 6.572 21 C -0.096 4.096 22 C 0.025 3.975 23 O -0.190 6.190 24 C 0.214 3.786 25 C -0.028 4.028 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.131 4.131 29 N -0.481 5.481 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.013 0.987 35 H 0.250 0.750 36 H 0.057 0.943 37 H -0.007 1.007 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.414 0.586 41 H 0.254 0.746 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.080 12.839 -22.058 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.095 0.905 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.390 4.390 7 H 0.090 0.910 8 C -0.250 4.250 9 N -0.583 5.583 10 Si 0.797 3.203 11 H -0.187 1.187 12 H -0.220 1.220 13 H -0.219 1.219 14 C 0.057 3.943 15 C -0.172 4.172 16 C 0.064 3.936 17 H 0.082 0.918 18 N -0.341 5.341 19 C 0.383 3.617 20 O -0.452 6.452 21 C -0.215 4.215 22 C -0.049 4.049 23 O -0.076 6.076 24 C 0.004 3.996 25 C -0.047 4.047 26 C -0.168 4.168 27 C -0.166 4.166 28 C -0.170 4.170 29 N -0.210 5.210 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.011 0.989 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.250 0.750 41 H 0.270 0.730 42 H 0.160 0.840 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.725 12.387 -21.534 29.948 hybrid contribution 1.203 -0.587 0.385 1.393 sum -15.522 11.800 -21.150 28.766 Atomic orbital electron populations 1.21703 0.92823 1.01939 1.02634 1.21771 0.96823 0.99819 0.93670 0.90527 1.21072 0.83499 0.96869 0.96046 1.44349 1.01130 1.71424 1.16345 1.19578 0.98993 1.11710 1.08743 0.90955 1.25881 1.01968 0.96038 1.01066 1.70213 1.22215 1.16097 1.49822 0.85178 0.78900 0.78436 0.77757 1.18697 1.21959 1.21871 1.20462 0.97684 0.92205 0.83919 1.22339 0.95758 1.00799 0.98355 1.20782 0.92734 0.96396 0.83672 0.91827 1.45866 1.64119 1.15043 1.09108 1.17070 0.77095 0.85204 0.82310 1.90815 1.52597 1.16742 1.85052 1.21657 1.11592 0.91969 0.96311 1.25741 0.95925 0.95333 0.87875 1.84379 1.62975 1.19109 1.41135 1.26830 0.98172 0.89924 0.84658 1.21695 0.98968 0.85584 0.98463 1.23035 0.97253 1.00540 0.95936 1.22809 0.94187 0.99015 1.00554 1.23051 0.97817 1.01211 0.94891 1.70731 1.15984 1.14314 1.19997 0.93219 0.90860 0.91810 0.91470 0.96864 0.94136 0.92470 0.98885 0.93320 0.92331 0.74964 0.72989 0.83988 0.89742 0.89229 0.88059 0.89853 0.89598 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.03 71.98 0.65 -2.83 16 2 C -0.10 -3.35 2.46 -10.72 -0.03 -3.38 16 3 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.15 6.30 5.80 86.36 0.50 6.80 16 5 N -0.61 -31.40 2.99 -699.15 -2.09 -33.49 16 6 C -0.26 -14.45 9.58 84.03 0.81 -13.65 16 7 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 8 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 9 N -0.94 -57.14 11.20 21.65 0.24 -56.90 16 10 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 C 0.18 9.51 5.30 86.35 0.46 9.97 16 15 C -0.13 -5.60 5.65 30.66 0.17 -5.43 16 16 C 0.17 6.15 1.88 45.02 0.08 6.23 16 17 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 18 N -0.69 -21.58 4.36 -445.69 -1.94 -23.52 16 19 C 0.60 19.53 7.78 86.66 0.67 20.21 16 20 O -0.57 -22.34 16.55 -4.08 -0.07 -22.41 16 21 C -0.10 -2.58 6.99 40.40 0.28 -2.30 16 22 C 0.03 0.53 11.95 67.32 0.80 1.33 16 23 O -0.19 -3.57 10.39 0.29 0.00 -3.56 16 24 C 0.21 4.06 7.33 88.39 0.65 4.70 16 25 C -0.03 -0.32 4.29 -11.01 -0.05 -0.36 16 26 C -0.13 -0.99 7.63 31.12 0.24 -0.76 16 27 C -0.13 -0.67 8.08 31.12 0.25 -0.42 16 28 C -0.13 -1.15 7.63 31.12 0.24 -0.91 16 29 N -0.48 -11.72 11.06 -293.04 -3.24 -14.96 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.49 7.36 -2.39 -0.02 1.48 16 33 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 34 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 37 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.05 2.08 8.14 -2.38 -0.02 2.07 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.41 11.34 8.04 -92.71 -0.75 10.60 16 41 H 0.25 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 0.76 7.82 -2.39 -0.02 0.74 16 44 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 Total: -1.00 -72.09 388.58 1.30 -70.79 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.22 Total: 19.98 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.15 Total: 16.53 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -7.03 Total: -128.88 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.06 Total: -25.97 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.09 1.30 -70.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944046844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.070 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds