Wall clock time and date at job start Tue Mar 31 2020 17:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49649 * 2 1 4 4 C 1.53186 * 109.52194 * 239.91780 * 2 1 3 5 5 N 1.46932 * 108.77388 * 185.39702 * 4 2 1 6 6 C 1.36941 * 120.62989 * 233.58900 * 5 4 2 7 7 H 1.07994 * 119.99755 * 27.67835 * 6 5 4 8 8 C 1.38807 * 119.99695 * 207.68015 * 6 5 4 9 9 N 1.31624 * 120.00463 * 17.37550 * 8 6 5 10 10 Si 1.86808 * 120.00016 * 197.37767 * 8 6 5 11 11 H 1.48497 * 109.46585 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46988 * 119.99758 * 10 8 6 13 13 H 1.48496 * 109.46788 * 239.99818 * 10 8 6 14 14 C 1.46920 * 118.73858 * 53.60672 * 5 4 2 15 15 C 1.53167 * 108.77174 * 306.39515 * 14 5 4 16 16 C 1.53033 * 109.49748 * 120.06341 * 2 1 3 17 17 H 1.09003 * 109.45929 * 301.36075 * 16 2 1 18 18 N 1.46503 * 109.46058 * 61.32846 * 16 2 1 19 19 C 1.34779 * 120.00129 * 205.02889 * 18 16 2 20 20 O 1.21614 * 119.99705 * 359.97438 * 19 18 16 21 21 C 1.47415 * 120.00182 * 180.02562 * 19 18 16 22 22 C 1.36087 * 126.45128 * 180.02562 * 21 19 18 23 23 O 1.34261 * 106.95164 * 180.23981 * 22 21 19 24 24 C 1.34047 * 108.22166 * 359.56906 * 23 22 21 25 25 C 1.50707 * 125.37616 * 180.13125 * 24 23 22 26 26 C 1.53785 * 113.61059 * 39.49001 * 25 24 23 27 27 C 1.53950 * 87.01924 * 220.04687 * 26 25 24 28 28 C 1.53777 * 87.11211 * 25.36520 * 27 26 25 29 29 N 1.29936 * 109.24753 * 0.44110 * 24 23 22 30 30 H 1.09000 * 109.47181 * 299.93500 * 1 2 3 31 31 H 1.09005 * 109.47275 * 59.93693 * 1 2 3 32 32 H 1.08998 * 109.47504 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58977 * 305.18542 * 4 2 1 34 34 H 1.09001 * 109.59075 * 65.61472 * 4 2 1 35 35 H 0.96999 * 120.00555 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.58533 * 66.17772 * 14 5 4 37 37 H 1.08994 * 109.59217 * 186.60417 * 14 5 4 38 38 H 1.09003 * 109.49769 * 294.67908 * 15 14 5 39 39 H 1.08994 * 109.47986 * 174.59559 * 15 14 5 40 40 H 0.97001 * 119.99881 * 25.02699 * 18 16 2 41 41 H 1.08004 * 126.52712 * 359.97170 * 22 21 19 42 42 H 1.09001 * 112.85264 * 170.68407 * 25 24 23 43 43 H 1.08995 * 113.61650 * 334.56937 * 26 25 24 44 44 H 1.09003 * 113.60970 * 105.46905 * 26 25 24 45 45 H 1.08999 * 113.53816 * 270.81248 * 27 26 25 46 46 H 1.09005 * 113.74580 * 139.94360 * 27 26 25 47 47 H 1.09006 * 113.61963 * 220.09173 * 28 27 26 48 48 H 1.08999 * 113.61611 * 89.18494 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2493 5 7 3.5053 -0.8283 -1.1689 6 6 4.2943 -0.3782 -2.1937 7 1 3.9471 0.4212 -2.8314 8 6 5.5402 -0.9495 -2.4127 9 7 5.8296 -2.1201 -1.8849 10 14 6.8066 -0.0571 -3.4566 11 1 6.2386 1.2306 -3.9303 12 1 8.0212 0.2061 -2.6439 13 1 7.1661 -0.8990 -4.6258 14 6 4.1059 -1.4254 0.0316 15 6 3.5708 -0.6939 1.2663 16 6 2.0408 -0.7227 1.2485 17 1 1.6578 -0.2240 2.1389 18 7 1.5789 -2.1129 1.2310 19 6 1.4503 -2.7949 2.3864 20 8 1.7180 -2.2563 3.4434 21 6 0.9861 -4.1939 2.3688 22 6 0.8094 -5.0009 3.4502 23 8 0.3841 -6.1875 2.9879 24 6 0.2921 -6.1087 1.6529 25 6 -0.1524 -7.2237 0.7417 26 6 -1.3192 -8.0517 1.3054 27 6 -0.6028 -9.2939 0.7454 28 6 0.7058 -8.4943 0.8588 29 7 0.6531 -4.9213 1.2681 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6063 -1.7217 -1.2978 34 1 1.7644 -0.1581 -2.1388 35 1 6.7001 -2.5195 -2.0382 36 1 3.8386 -2.4807 0.0877 37 1 5.1901 -1.3229 -0.0126 38 1 3.9154 0.3401 1.2544 39 1 3.9336 -1.1884 2.1674 40 1 1.3657 -2.5425 0.3879 41 1 0.9828 -4.7383 4.4834 42 1 -0.3071 -6.8944 -0.2859 43 1 -1.3800 -8.0362 2.3935 44 1 -2.2749 -7.8436 0.8241 45 1 -0.8817 -9.5315 -0.2812 46 1 -0.6441 -10.1598 1.4063 47 1 1.3829 -8.6430 0.0176 48 1 1.1998 -8.6000 1.8247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944046847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:32 Heat of formation + Delta-G solvation = 21.850655 kcal Electronic energy + Delta-G solvation = -29435.700340 eV Core-core repulsion = 25493.338694 eV Total energy + Delta-G solvation = -3942.361645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.50001 -39.73584 -38.91052 -37.56500 -34.88952 -34.20526 -32.41472 -31.13013 -30.77697 -29.86654 -26.41324 -26.02643 -25.89551 -25.37733 -23.98243 -22.08040 -21.70428 -21.09554 -20.76209 -19.51474 -18.48674 -18.13271 -16.85045 -16.78880 -16.61852 -15.91830 -15.54410 -15.20086 -14.80823 -14.61556 -14.19589 -13.81792 -13.69182 -13.56305 -13.25488 -13.12349 -12.90999 -12.89670 -12.75511 -12.51213 -12.07705 -11.47045 -11.35346 -11.33309 -11.30857 -11.05810 -10.87647 -10.83196 -10.80852 -10.76753 -10.68557 -10.31128 -10.17559 -10.02246 -9.87140 -9.70358 -9.39137 -9.04525 -8.54339 -8.43136 -6.64961 -5.76488 -3.19189 1.09870 2.00247 2.46172 3.36433 3.38448 3.46309 3.48336 3.52332 3.79069 4.15627 4.25357 4.47108 4.50609 4.55271 4.79880 4.94030 5.21715 5.26078 5.32270 5.34930 5.35480 5.40228 5.50467 5.53238 5.54209 5.57280 5.61738 5.64487 5.70655 5.89602 6.00697 6.02693 6.06300 6.12892 6.20309 6.32650 6.39822 6.49279 6.65885 6.69697 6.80212 6.95475 7.00783 7.40815 7.44216 7.70973 7.81837 7.91815 8.46280 8.47296 9.22755 9.86374 10.42763 11.31448 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.003257 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.144980 B = 8595.802477 C = 9769.970607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.174 3.826 15 C -0.154 4.154 16 C 0.159 3.841 17 H 0.074 0.926 18 N -0.689 5.689 19 C 0.598 3.402 20 O -0.548 6.548 21 C -0.062 4.062 22 C 0.002 3.998 23 O -0.197 6.197 24 C 0.206 3.794 25 C -0.019 4.019 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.131 4.131 29 N -0.453 5.453 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.015 0.985 34 H 0.057 0.943 35 H 0.252 0.748 36 H 0.018 0.982 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.410 0.590 41 H 0.230 0.770 42 H 0.134 0.866 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 -10.859 8.161 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.092 0.908 18 N -0.339 5.339 19 C 0.383 3.617 20 O -0.427 6.427 21 C -0.182 4.182 22 C -0.071 4.071 23 O -0.083 6.083 24 C -0.003 4.003 25 C -0.038 4.038 26 C -0.170 4.170 27 C -0.176 4.176 28 C -0.169 4.169 29 N -0.182 5.182 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.246 0.754 42 H 0.152 0.848 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.457 -10.332 8.213 19.576 hybrid contribution 0.775 0.090 -0.148 0.794 sum -13.682 -10.242 8.065 18.898 Atomic orbital electron populations 1.21771 0.95751 1.01443 1.01050 1.21945 0.94594 1.00699 0.96682 0.89904 1.20915 0.86118 0.96243 0.94309 1.44075 0.99151 1.71541 1.16583 1.19209 0.98155 1.12284 1.08521 0.91627 1.25033 0.99907 0.95376 0.99298 1.70058 1.21741 1.14647 1.48022 0.86248 0.81767 0.79247 0.79658 1.20268 1.21609 1.21789 1.20717 0.99230 0.93010 0.82203 1.22572 0.94077 1.01990 1.00813 1.20972 0.95238 0.80188 0.98103 0.90762 1.45947 1.65127 1.14045 1.08816 1.16724 0.77569 0.82874 0.84543 1.90783 1.52242 1.68911 1.30769 1.21938 1.09273 0.97684 0.89346 1.25231 0.99279 0.81735 1.00896 1.84315 1.64973 1.34810 1.24190 1.26057 0.99914 0.94974 0.79398 1.21313 0.98043 0.87668 0.96810 1.23052 0.97127 0.95166 1.01677 1.22846 0.95773 0.97026 1.01994 1.23024 0.97083 0.93249 1.03587 1.70825 1.14700 1.02920 1.29786 0.93314 0.92695 0.93003 0.96685 0.92472 0.93748 0.96354 0.89586 0.91643 0.92702 0.75241 0.75425 0.84835 0.89315 0.90293 0.89445 0.90676 0.89993 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.06 37.16 0.34 -1.68 16 2 C -0.12 -2.03 2.67 -90.51 -0.24 -2.27 16 3 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.15 3.09 5.50 -3.71 -0.02 3.07 16 5 N -0.59 -14.68 2.99 -172.34 -0.52 -15.19 16 6 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 7 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 10 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.17 4.25 5.05 -3.73 -0.02 4.23 16 15 C -0.15 -3.17 5.77 -26.63 -0.15 -3.32 16 16 C 0.16 2.88 2.21 -67.89 -0.15 2.73 16 17 H 0.07 1.33 7.58 -51.93 -0.39 0.94 16 18 N -0.69 -12.30 3.59 -54.84 -0.20 -12.49 16 19 C 0.60 10.69 7.78 -12.52 -0.10 10.59 16 20 O -0.55 -10.72 16.55 5.26 0.09 -10.64 16 21 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 22 C 0.00 0.03 11.95 29.96 0.36 0.39 16 23 O -0.20 -2.35 10.44 6.51 0.07 -2.28 16 24 C 0.21 2.58 7.32 -13.08 -0.10 2.48 16 25 C -0.02 -0.17 4.29 -90.95 -0.39 -0.56 16 26 C -0.13 -0.89 7.64 -25.83 -0.20 -1.09 16 27 C -0.14 -0.81 8.09 -25.83 -0.21 -1.01 16 28 C -0.13 -1.01 7.63 -25.92 -0.20 -1.21 16 29 N -0.45 -7.01 11.06 -7.65 -0.08 -7.10 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.74 7.54 -51.93 -0.39 0.34 16 33 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 34 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 37 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.41 7.48 6.46 -40.82 -0.26 7.22 16 41 H 0.23 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.62 7.85 -51.93 -0.41 0.21 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -32.13 384.71 -8.69 -40.82 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.55 Total: 6.33 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.89 Total: 3.73 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.18 Total: -60.51 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.16 Total: -12.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.13 -8.69 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944046847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.675 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds