Wall clock time and date at job start Tue Mar 31 2020 17:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49649 * 2 1 4 4 C 1.53186 * 109.52194 * 239.91780 * 2 1 3 5 5 N 1.46932 * 108.77388 * 185.39702 * 4 2 1 6 6 C 1.36941 * 120.62989 * 233.58900 * 5 4 2 7 7 H 1.07994 * 119.99755 * 27.67835 * 6 5 4 8 8 C 1.38807 * 119.99695 * 207.68015 * 6 5 4 9 9 N 1.31624 * 120.00463 * 17.37550 * 8 6 5 10 10 Si 1.86808 * 120.00016 * 197.37767 * 8 6 5 11 11 H 1.48497 * 109.46585 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46988 * 119.99758 * 10 8 6 13 13 H 1.48496 * 109.46788 * 239.99818 * 10 8 6 14 14 C 1.46920 * 118.73858 * 53.60672 * 5 4 2 15 15 C 1.53167 * 108.77174 * 306.39515 * 14 5 4 16 16 C 1.53033 * 109.49748 * 120.06341 * 2 1 3 17 17 H 1.09003 * 109.45929 * 301.36075 * 16 2 1 18 18 N 1.46503 * 109.46058 * 61.32846 * 16 2 1 19 19 C 1.34779 * 120.00129 * 205.02889 * 18 16 2 20 20 O 1.21614 * 119.99705 * 359.97438 * 19 18 16 21 21 C 1.47415 * 120.00182 * 180.02562 * 19 18 16 22 22 C 1.36087 * 126.45128 * 180.02562 * 21 19 18 23 23 O 1.34261 * 106.95164 * 180.23981 * 22 21 19 24 24 C 1.34047 * 108.22166 * 359.56906 * 23 22 21 25 25 C 1.50707 * 125.37616 * 180.13125 * 24 23 22 26 26 C 1.53785 * 113.61059 * 39.49001 * 25 24 23 27 27 C 1.53950 * 87.01924 * 220.04687 * 26 25 24 28 28 C 1.53777 * 87.11211 * 25.36520 * 27 26 25 29 29 N 1.29936 * 109.24753 * 0.44110 * 24 23 22 30 30 H 1.09000 * 109.47181 * 299.93500 * 1 2 3 31 31 H 1.09005 * 109.47275 * 59.93693 * 1 2 3 32 32 H 1.08998 * 109.47504 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58977 * 305.18542 * 4 2 1 34 34 H 1.09001 * 109.59075 * 65.61472 * 4 2 1 35 35 H 0.96999 * 120.00555 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.58533 * 66.17772 * 14 5 4 37 37 H 1.08994 * 109.59217 * 186.60417 * 14 5 4 38 38 H 1.09003 * 109.49769 * 294.67908 * 15 14 5 39 39 H 1.08994 * 109.47986 * 174.59559 * 15 14 5 40 40 H 0.97001 * 119.99881 * 25.02699 * 18 16 2 41 41 H 1.08004 * 126.52712 * 359.97170 * 22 21 19 42 42 H 1.09001 * 112.85264 * 170.68407 * 25 24 23 43 43 H 1.08995 * 113.61650 * 334.56937 * 26 25 24 44 44 H 1.09003 * 113.60970 * 105.46905 * 26 25 24 45 45 H 1.08999 * 113.53816 * 270.81248 * 27 26 25 46 46 H 1.09005 * 113.74580 * 139.94360 * 27 26 25 47 47 H 1.09006 * 113.61963 * 220.09173 * 28 27 26 48 48 H 1.08999 * 113.61611 * 89.18494 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2493 5 7 3.5053 -0.8283 -1.1689 6 6 4.2943 -0.3782 -2.1937 7 1 3.9471 0.4212 -2.8314 8 6 5.5402 -0.9495 -2.4127 9 7 5.8296 -2.1201 -1.8849 10 14 6.8066 -0.0571 -3.4566 11 1 6.2386 1.2306 -3.9303 12 1 8.0212 0.2061 -2.6439 13 1 7.1661 -0.8990 -4.6258 14 6 4.1059 -1.4254 0.0316 15 6 3.5708 -0.6939 1.2663 16 6 2.0408 -0.7227 1.2485 17 1 1.6578 -0.2240 2.1389 18 7 1.5789 -2.1129 1.2310 19 6 1.4503 -2.7949 2.3864 20 8 1.7180 -2.2563 3.4434 21 6 0.9861 -4.1939 2.3688 22 6 0.8094 -5.0009 3.4502 23 8 0.3841 -6.1875 2.9879 24 6 0.2921 -6.1087 1.6529 25 6 -0.1524 -7.2237 0.7417 26 6 -1.3192 -8.0517 1.3054 27 6 -0.6028 -9.2939 0.7454 28 6 0.7058 -8.4943 0.8588 29 7 0.6531 -4.9213 1.2681 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6063 -1.7217 -1.2978 34 1 1.7644 -0.1581 -2.1388 35 1 6.7001 -2.5195 -2.0382 36 1 3.8386 -2.4807 0.0877 37 1 5.1901 -1.3229 -0.0126 38 1 3.9154 0.3401 1.2544 39 1 3.9336 -1.1884 2.1674 40 1 1.3657 -2.5425 0.3879 41 1 0.9828 -4.7383 4.4834 42 1 -0.3071 -6.8944 -0.2859 43 1 -1.3800 -8.0362 2.3935 44 1 -2.2749 -7.8436 0.8241 45 1 -0.8817 -9.5315 -0.2812 46 1 -0.6441 -10.1598 1.4063 47 1 1.3829 -8.6430 0.0176 48 1 1.1998 -8.6000 1.8247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944046847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:30 Heat of formation + Delta-G solvation = 0.793196 kcal Electronic energy + Delta-G solvation = -29436.613460 eV Core-core repulsion = 25493.338694 eV Total energy + Delta-G solvation = -3943.274765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -44.52692 -41.19934 -39.55320 -39.11680 -36.06772 -35.92991 -33.94625 -32.91403 -32.05171 -31.41585 -27.44443 -27.35869 -27.01773 -26.59023 -25.31600 -23.71407 -22.82421 -22.66937 -21.90645 -20.37494 -20.09196 -19.20512 -18.65624 -17.88161 -17.77427 -16.90689 -16.77514 -16.57535 -16.23474 -16.05095 -15.74550 -15.43502 -15.25965 -14.75433 -14.72888 -14.60632 -14.20795 -13.76221 -13.56376 -13.53649 -13.34027 -13.17915 -12.99400 -12.74279 -12.56226 -12.42297 -12.39476 -12.16646 -11.97245 -11.92882 -11.90448 -11.70938 -11.51392 -11.42691 -11.41945 -11.26953 -11.11910 -10.55419 -10.18677 -9.92475 -8.68987 -7.87462 -5.33134 0.03223 0.90010 1.45390 1.47573 1.50302 1.57991 2.07176 2.23245 2.50596 2.79663 3.27404 3.54092 3.57981 3.64539 3.67057 3.78329 3.81314 3.91301 4.03592 4.04916 4.09730 4.37435 4.44362 4.56146 4.57804 4.63809 4.71926 4.74643 4.76941 4.78445 4.86491 4.92704 4.98868 4.98994 5.04790 5.06915 5.11171 5.13989 5.14248 5.27034 5.39883 5.45898 5.50264 5.52979 5.63652 5.70964 6.30628 6.37372 6.58072 7.06674 7.13079 7.84276 8.36550 9.18708 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.003257 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.144980 B = 8595.802477 C = 9769.970607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.607 5.607 6 C -0.259 4.259 7 H 0.071 0.929 8 C -0.052 4.052 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.164 3.836 17 H 0.085 0.915 18 N -0.690 5.690 19 C 0.597 3.403 20 O -0.570 6.570 21 C -0.101 4.101 22 C 0.027 3.973 23 O -0.189 6.189 24 C 0.213 3.787 25 C -0.031 4.031 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.134 4.134 29 N -0.489 5.489 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.012 0.988 34 H 0.061 0.939 35 H 0.248 0.752 36 H -0.009 1.009 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.407 0.593 41 H 0.260 0.740 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 -11.000 8.448 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.104 0.896 4 C 0.024 3.976 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.089 0.911 8 C -0.247 4.247 9 N -0.582 5.582 10 Si 0.795 3.205 11 H -0.188 1.188 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.060 3.940 17 H 0.103 0.897 18 N -0.339 5.339 19 C 0.384 3.616 20 O -0.450 6.450 21 C -0.220 4.220 22 C -0.047 4.047 23 O -0.075 6.075 24 C 0.003 3.997 25 C -0.051 4.051 26 C -0.162 4.162 27 C -0.163 4.163 28 C -0.172 4.172 29 N -0.218 5.218 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.009 0.991 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.244 0.756 41 H 0.275 0.725 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.384 -10.457 8.494 21.211 hybrid contribution 1.332 0.060 -0.233 1.353 sum -15.052 -10.397 8.261 20.072 Atomic orbital electron populations 1.21691 0.92877 1.01830 1.02667 1.21802 0.96810 0.99905 0.94086 0.89623 1.21063 0.83596 0.96601 0.96332 1.44292 1.00976 1.71466 1.16225 1.19567 0.98686 1.12057 1.08644 0.91128 1.25804 1.01817 0.96047 1.01053 1.70219 1.21810 1.16221 1.49909 0.85218 0.79028 0.78480 0.77785 1.18809 1.22011 1.21998 1.20367 0.97136 0.92091 0.84053 1.22399 0.96184 1.01362 0.98352 1.20904 0.93190 0.80803 0.99101 0.89687 1.45922 1.65195 1.13950 1.08863 1.16995 0.76884 0.83679 0.84044 1.90753 1.53351 1.69711 1.31236 1.21795 1.12157 0.97322 0.90737 1.25774 0.96532 0.81006 1.01404 1.84360 1.64666 1.34399 1.24054 1.26781 0.98241 0.94860 0.79800 1.21683 0.99872 0.87074 0.96421 1.23048 0.96788 0.94696 1.01683 1.22821 0.93703 0.96799 1.02963 1.23063 0.97943 0.92961 1.03271 1.70780 1.16374 1.04241 1.30381 0.91709 0.91072 0.93243 0.96985 0.92033 0.94321 0.99071 0.93272 0.91226 0.93240 0.75581 0.72456 0.84693 0.89382 0.89098 0.88243 0.89451 0.90218 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.06 71.98 0.65 -2.78 16 2 C -0.11 -3.48 2.67 -10.72 -0.03 -3.51 16 3 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.15 6.07 5.50 86.36 0.48 6.55 16 5 N -0.61 -30.60 2.99 -699.17 -2.09 -32.69 16 6 C -0.26 -14.30 9.59 84.03 0.81 -13.50 16 7 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 8 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 9 N -0.94 -56.64 11.19 21.65 0.24 -56.39 16 10 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 C 0.19 9.61 5.05 86.36 0.44 10.04 16 15 C -0.14 -5.95 5.77 30.66 0.18 -5.77 16 16 C 0.16 5.85 2.21 45.01 0.10 5.95 16 17 H 0.09 2.92 7.58 -2.39 -0.02 2.90 16 18 N -0.69 -24.77 3.59 -445.68 -1.60 -26.38 16 19 C 0.60 21.43 7.78 86.66 0.67 22.11 16 20 O -0.57 -22.14 16.55 -4.08 -0.07 -22.21 16 21 C -0.10 -3.18 6.99 40.40 0.28 -2.90 16 22 C 0.03 0.65 11.95 67.32 0.80 1.45 16 23 O -0.19 -4.27 10.44 0.37 0.00 -4.27 16 24 C 0.21 5.22 7.32 88.39 0.65 5.86 16 25 C -0.03 -0.53 4.29 -11.01 -0.05 -0.58 16 26 C -0.12 -1.41 7.64 31.18 0.24 -1.17 16 27 C -0.13 -1.16 8.09 31.18 0.25 -0.91 16 28 C -0.13 -1.91 7.63 31.12 0.24 -1.67 16 29 N -0.49 -15.24 11.06 -293.04 -3.24 -18.48 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.05 1.31 7.54 -2.39 -0.02 1.29 16 33 H 0.01 0.51 6.64 -2.39 -0.02 0.49 16 34 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H -0.01 -0.48 7.74 -2.38 -0.02 -0.50 16 37 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.41 15.15 6.46 -92.71 -0.60 14.55 16 41 H 0.26 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.09 1.04 7.85 -2.39 -0.02 1.02 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 Total: -1.00 -70.97 384.71 1.76 -69.20 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.37 Total: 27.11 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.12 Total: 16.64 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -6.69 Total: -133.94 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.97 1.76 -69.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944046847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.998 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds