Wall clock time and date at job start Tue Mar 31 2020 17:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46049 * 2 1 4 4 C 1.53037 * 109.46271 * 240.03965 * 2 1 3 5 5 C 1.53194 * 109.31546 * 178.61396 * 4 2 1 6 6 N 1.46926 * 108.77264 * 54.63474 * 5 4 2 7 7 C 1.36941 * 120.63170 * 126.41601 * 6 5 4 8 8 H 1.08001 * 119.99840 * 207.67501 * 7 6 5 9 9 C 1.38808 * 119.99743 * 27.67008 * 7 6 5 10 10 N 1.31615 * 119.99919 * 17.36296 * 9 7 6 11 11 Si 1.86803 * 119.99890 * 197.35495 * 9 7 6 12 12 H 1.48502 * 109.46880 * 60.00728 * 11 9 7 13 13 H 1.48501 * 109.47157 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47242 * 300.00464 * 11 9 7 15 15 C 1.46930 * 118.73909 * 306.39072 * 6 5 4 16 16 C 1.53039 * 109.46040 * 119.96939 * 2 1 3 17 17 H 1.09007 * 109.52228 * 61.41672 * 16 2 1 18 18 N 1.46501 * 109.49714 * 301.34215 * 16 2 1 19 19 C 1.34777 * 120.00022 * 155.15970 * 18 16 2 20 20 O 1.21286 * 120.00256 * 359.97438 * 19 18 16 21 21 C 1.50702 * 120.00000 * 179.97438 * 19 18 16 22 22 C 1.50707 * 109.47079 * 179.97438 * 21 19 18 23 23 C 1.35445 * 126.77278 * 89.71169 * 22 21 19 24 24 C 1.41377 * 103.98756 * 179.90877 * 23 22 21 25 25 C 1.50699 * 126.80785 * 180.09473 * 24 23 22 26 26 C 1.53004 * 117.49852 * 343.91562 * 25 24 23 27 27 C 1.53002 * 117.49947 * 275.29338 * 25 24 23 28 28 N 1.30175 * 106.39023 * 0.35821 * 24 23 22 29 29 O 1.20921 * 111.60651 * 359.77090 * 28 24 23 30 30 H 1.08994 * 109.47480 * 300.02794 * 1 2 3 31 31 H 1.09001 * 109.47082 * 60.03054 * 1 2 3 32 32 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49949 * 58.66317 * 4 2 1 34 34 H 1.09007 * 109.49796 * 298.56539 * 4 2 1 35 35 H 1.08996 * 109.58426 * 294.84952 * 5 4 2 36 36 H 1.08998 * 109.58505 * 174.41995 * 5 4 2 37 37 H 0.97007 * 119.99487 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.58472 * 173.39269 * 15 6 5 39 39 H 1.08994 * 109.58704 * 293.81951 * 15 6 5 40 40 H 0.96995 * 120.00133 * 335.15869 * 18 16 2 41 41 H 1.08995 * 109.47148 * 299.99963 * 21 19 18 42 42 H 1.09004 * 109.46839 * 60.00519 * 21 19 18 43 43 H 1.08004 * 128.00802 * 0.02562 * 23 22 21 44 44 H 1.09001 * 115.55099 * 129.62150 * 25 24 23 45 45 H 1.08998 * 117.49411 * 359.97438 * 26 25 24 46 46 H 1.08997 * 117.50106 * 145.01778 * 26 25 24 47 47 H 1.08998 * 117.49726 * 214.98003 * 27 25 24 48 48 H 1.09002 * 117.49795 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5715 -0.6884 -1.2643 6 7 4.0679 -1.2488 -0.0001 7 6 4.9765 -2.2733 -0.0001 8 1 5.0096 -2.9657 0.8281 9 6 5.8549 -2.4219 -1.0646 10 7 6.0606 -1.4199 -1.8928 11 14 6.7451 -4.0440 -1.3215 12 1 5.7503 -5.1280 -1.5233 13 1 7.6193 -3.9448 -2.5179 14 1 7.5737 -4.3484 -0.1274 15 6 3.5714 -0.6886 1.2643 16 6 2.0399 -0.7208 1.2500 17 1 1.6978 -1.7558 1.2388 18 7 1.5255 -0.0489 2.4459 19 6 1.4001 -0.7317 3.6011 20 8 1.7126 -1.9025 3.6506 21 6 0.8715 -0.0403 4.8315 22 6 0.8297 -1.0176 5.9780 23 6 1.8200 -1.2662 6.8679 24 6 1.2720 -2.2497 7.7230 25 6 1.9470 -2.8956 8.9055 26 6 3.4664 -2.7536 9.0161 27 6 2.8498 -4.1003 8.6326 28 7 0.0709 -2.4910 7.2831 29 8 -0.1925 -1.8164 6.3147 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2205 -2.1399 34 1 1.6979 -1.7555 -1.2384 35 1 3.9143 0.3411 -1.3672 36 1 3.9417 -1.2843 -2.0985 37 1 6.6747 -1.5237 -2.6365 38 1 3.9416 -1.2847 2.0984 39 1 3.9143 0.3408 1.3675 40 1 1.2752 0.8874 2.4063 41 1 1.5243 0.7939 5.0882 42 1 -0.1340 0.3321 4.6352 43 1 2.8006 -0.8159 6.9148 44 1 1.3725 -2.8968 9.8319 45 1 3.9777 -2.1934 8.2333 46 1 3.8918 -2.6612 10.0154 47 1 2.8695 -4.8939 9.3795 48 1 2.9552 -4.4260 7.5977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966629916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:42 Heat of formation + Delta-G solvation = 65.258698 kcal Electronic energy + Delta-G solvation = -28883.483785 eV Core-core repulsion = 24943.004453 eV Total energy + Delta-G solvation = -3940.479332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.98543 -39.84857 -37.76085 -37.74374 -34.52937 -33.78033 -33.12018 -32.90428 -31.11897 -29.56945 -28.17176 -27.10373 -24.78518 -24.10139 -23.11743 -22.49411 -22.12908 -21.11484 -20.54263 -19.86577 -19.30417 -17.82425 -17.39789 -16.79680 -16.67006 -16.08196 -15.56997 -15.36655 -14.77364 -14.65833 -14.18051 -13.87932 -13.87272 -13.62211 -13.42995 -13.35995 -13.07013 -12.52414 -12.39181 -12.21043 -12.04103 -11.80227 -11.66833 -11.64474 -11.51279 -11.23507 -11.04978 -10.78928 -10.69206 -10.63835 -10.28471 -10.19805 -10.04807 -9.88769 -9.85854 -9.67900 -9.64203 -9.31366 -8.85266 -8.40796 -6.68605 -5.79123 -3.21100 1.35003 2.08848 2.69079 2.89875 3.38752 3.41299 3.43647 3.45574 3.49406 3.92376 4.27996 4.51215 4.56412 4.65356 4.76490 4.83866 4.88018 5.01073 5.08779 5.11513 5.26312 5.34668 5.36791 5.37647 5.45590 5.53547 5.58503 5.60691 5.79553 5.86529 5.87170 5.92582 5.93952 6.03833 6.15166 6.20003 6.27512 6.53109 6.60442 6.63967 6.70723 6.80859 6.96619 7.34357 7.63539 7.64703 7.82399 8.20104 8.33703 8.45794 9.21612 9.83902 10.39145 11.29570 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.003089 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.994408 B = 9063.139230 C =11048.571857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.142 3.858 16 C 0.133 3.867 17 H 0.086 0.914 18 N -0.717 5.717 19 C 0.510 3.490 20 O -0.525 6.525 21 C -0.063 4.063 22 C -0.006 4.006 23 C -0.213 4.213 24 C 0.048 3.952 25 C -0.088 4.088 26 C -0.162 4.162 27 C -0.163 4.163 28 N -0.360 5.360 29 O 0.105 5.895 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.089 0.911 37 H 0.254 0.746 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.396 0.604 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.170 0.830 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 6.702 15.758 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.174 4.174 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.015 3.985 16 C 0.027 3.973 17 H 0.104 0.896 18 N -0.368 5.368 19 C 0.294 3.706 20 O -0.401 6.401 21 C -0.104 4.104 22 C -0.070 4.070 23 C -0.234 4.234 24 C -0.110 4.110 25 C -0.106 4.106 26 C -0.200 4.200 27 C -0.201 4.201 28 N -0.063 5.063 29 O 0.038 5.962 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.229 0.771 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.187 0.813 44 H 0.139 0.861 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.897 5.006 16.022 20.575 hybrid contribution 1.085 0.155 -0.321 1.142 sum -10.813 5.161 15.701 19.750 Atomic orbital electron populations 1.21857 0.95968 1.01606 1.00738 1.21302 0.94569 0.99644 0.95444 0.91440 1.22256 1.00672 0.99585 0.94878 1.20851 0.87317 0.97301 0.90388 1.43985 1.48084 1.39799 0.99119 1.19175 1.09785 1.02910 1.06265 0.91662 1.25002 0.97190 0.97483 0.99809 1.70028 1.37773 1.29042 1.18001 0.86366 0.79253 0.83853 0.77322 1.20952 1.21609 1.20849 1.21179 0.90068 0.96580 0.90712 1.21800 0.96719 0.96975 0.81769 0.89564 1.46055 1.66107 1.14308 1.10364 1.20145 0.78851 0.87389 0.84172 1.90800 1.48836 1.16072 1.84360 1.20161 1.05487 0.95745 0.88987 1.23529 0.88625 0.96499 0.98319 1.22264 1.01595 1.02307 0.97279 1.22564 0.91525 0.98064 0.98875 1.20082 0.92476 1.02947 0.95136 1.23032 0.93047 1.00393 1.03515 1.23042 1.02081 0.91471 1.03510 1.73779 1.17934 1.13972 1.00575 1.84805 1.37319 1.39291 1.34785 0.93359 0.92959 0.92929 0.92689 0.92426 0.96314 0.89243 0.93599 0.92454 0.96512 0.77050 0.85559 0.86490 0.81259 0.86097 0.88084 0.87846 0.87948 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.02 37.16 0.34 -1.42 16 2 C -0.09 -1.37 2.27 -90.58 -0.21 -1.57 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 5 C 0.17 3.87 5.31 -3.71 -0.02 3.85 16 6 N -0.59 -14.68 2.99 -172.32 -0.52 -15.20 16 7 C -0.25 -7.04 9.59 -15.06 -0.14 -7.19 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 9 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 10 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 11 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.14 3.00 6.09 -3.71 -0.02 2.97 16 16 C 0.13 2.24 2.06 -67.81 -0.14 2.10 16 17 H 0.09 1.74 7.58 -51.92 -0.39 1.34 16 18 N -0.72 -8.97 4.37 -53.69 -0.23 -9.21 16 19 C 0.51 6.90 7.79 -10.98 -0.09 6.82 16 20 O -0.53 -10.01 15.70 5.55 0.09 -9.93 16 21 C -0.06 -0.55 6.27 -29.03 -0.18 -0.73 16 22 C -0.01 -0.07 5.98 -35.30 -0.21 -0.28 16 23 C -0.21 -2.52 10.40 -39.39 -0.41 -2.93 16 24 C 0.05 0.62 6.95 -82.10 -0.57 0.05 16 25 C -0.09 -0.89 6.33 -91.77 -0.58 -1.47 16 26 C -0.16 -1.35 10.04 -26.73 -0.27 -1.61 16 27 C -0.16 -1.56 10.23 -26.73 -0.27 -1.83 16 28 N -0.36 -5.32 12.07 33.42 0.40 -4.92 16 29 O 0.11 1.49 11.20 17.20 0.19 1.68 16 30 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.40 3.48 8.30 -40.82 -0.34 3.14 16 41 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.17 1.62 7.62 -52.48 -0.40 1.22 16 44 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.10 0.86 7.34 -51.93 -0.38 0.48 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -34.33 391.25 -9.25 -43.58 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.67 Total: 2.36 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.01 Total: -5.81 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.27 Total: -54.78 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.28 Total: -8.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.33 -9.25 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966629916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.841 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds