Wall clock time and date at job start Tue Mar 31 2020 17:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46049 * 2 1 4 4 C 1.53037 * 109.46271 * 240.03965 * 2 1 3 5 5 C 1.53194 * 109.31546 * 178.61396 * 4 2 1 6 6 N 1.46926 * 108.77264 * 54.63474 * 5 4 2 7 7 C 1.36941 * 120.63170 * 126.41601 * 6 5 4 8 8 H 1.08001 * 119.99840 * 207.67501 * 7 6 5 9 9 C 1.38808 * 119.99743 * 27.67008 * 7 6 5 10 10 N 1.31615 * 119.99919 * 17.36296 * 9 7 6 11 11 Si 1.86803 * 119.99890 * 197.35495 * 9 7 6 12 12 H 1.48502 * 109.46880 * 60.00728 * 11 9 7 13 13 H 1.48501 * 109.47157 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47242 * 300.00464 * 11 9 7 15 15 C 1.46930 * 118.73909 * 306.39072 * 6 5 4 16 16 C 1.53039 * 109.46040 * 119.96939 * 2 1 3 17 17 H 1.09007 * 109.52228 * 61.41672 * 16 2 1 18 18 N 1.46501 * 109.49714 * 301.34215 * 16 2 1 19 19 C 1.34777 * 120.00022 * 155.15970 * 18 16 2 20 20 O 1.21286 * 120.00256 * 359.97438 * 19 18 16 21 21 C 1.50702 * 120.00000 * 179.97438 * 19 18 16 22 22 C 1.50707 * 109.47079 * 179.97438 * 21 19 18 23 23 C 1.35445 * 126.77278 * 89.71169 * 22 21 19 24 24 C 1.41377 * 103.98756 * 179.90877 * 23 22 21 25 25 C 1.50699 * 126.80785 * 180.09473 * 24 23 22 26 26 C 1.53004 * 117.49852 * 343.91562 * 25 24 23 27 27 C 1.53002 * 117.49947 * 275.29338 * 25 24 23 28 28 N 1.30175 * 106.39023 * 0.35821 * 24 23 22 29 29 O 1.20921 * 111.60651 * 359.77090 * 28 24 23 30 30 H 1.08994 * 109.47480 * 300.02794 * 1 2 3 31 31 H 1.09001 * 109.47082 * 60.03054 * 1 2 3 32 32 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49949 * 58.66317 * 4 2 1 34 34 H 1.09007 * 109.49796 * 298.56539 * 4 2 1 35 35 H 1.08996 * 109.58426 * 294.84952 * 5 4 2 36 36 H 1.08998 * 109.58505 * 174.41995 * 5 4 2 37 37 H 0.97007 * 119.99487 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.58472 * 173.39269 * 15 6 5 39 39 H 1.08994 * 109.58704 * 293.81951 * 15 6 5 40 40 H 0.96995 * 120.00133 * 335.15869 * 18 16 2 41 41 H 1.08995 * 109.47148 * 299.99963 * 21 19 18 42 42 H 1.09004 * 109.46839 * 60.00519 * 21 19 18 43 43 H 1.08004 * 128.00802 * 0.02562 * 23 22 21 44 44 H 1.09001 * 115.55099 * 129.62150 * 25 24 23 45 45 H 1.08998 * 117.49411 * 359.97438 * 26 25 24 46 46 H 1.08997 * 117.50106 * 145.01778 * 26 25 24 47 47 H 1.08998 * 117.49726 * 214.98003 * 27 25 24 48 48 H 1.09002 * 117.49795 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5715 -0.6884 -1.2643 6 7 4.0679 -1.2488 -0.0001 7 6 4.9765 -2.2733 -0.0001 8 1 5.0096 -2.9657 0.8281 9 6 5.8549 -2.4219 -1.0646 10 7 6.0606 -1.4199 -1.8928 11 14 6.7451 -4.0440 -1.3215 12 1 5.7503 -5.1280 -1.5233 13 1 7.6193 -3.9448 -2.5179 14 1 7.5737 -4.3484 -0.1274 15 6 3.5714 -0.6886 1.2643 16 6 2.0399 -0.7208 1.2500 17 1 1.6978 -1.7558 1.2388 18 7 1.5255 -0.0489 2.4459 19 6 1.4001 -0.7317 3.6011 20 8 1.7126 -1.9025 3.6506 21 6 0.8715 -0.0403 4.8315 22 6 0.8297 -1.0176 5.9780 23 6 1.8200 -1.2662 6.8679 24 6 1.2720 -2.2497 7.7230 25 6 1.9470 -2.8956 8.9055 26 6 3.4664 -2.7536 9.0161 27 6 2.8498 -4.1003 8.6326 28 7 0.0709 -2.4910 7.2831 29 8 -0.1925 -1.8164 6.3147 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2205 -2.1399 34 1 1.6979 -1.7555 -1.2384 35 1 3.9143 0.3411 -1.3672 36 1 3.9417 -1.2843 -2.0985 37 1 6.6747 -1.5237 -2.6365 38 1 3.9416 -1.2847 2.0984 39 1 3.9143 0.3408 1.3675 40 1 1.2752 0.8874 2.4063 41 1 1.5243 0.7939 5.0882 42 1 -0.1340 0.3321 4.6352 43 1 2.8006 -0.8159 6.9148 44 1 1.3725 -2.8968 9.8319 45 1 3.9777 -2.1934 8.2333 46 1 3.8918 -2.6612 10.0154 47 1 2.8695 -4.8939 9.3795 48 1 2.9552 -4.4260 7.5977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966629916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:41 Heat of formation + Delta-G solvation = 43.439892 kcal Electronic energy + Delta-G solvation = -28884.429919 eV Core-core repulsion = 24943.004453 eV Total energy + Delta-G solvation = -3941.425466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.94719 -41.08346 -39.21922 -38.51932 -36.19125 -34.71953 -34.44795 -33.90173 -33.02834 -30.94031 -29.38906 -28.60147 -25.88286 -25.65122 -24.21823 -23.67015 -22.97764 -22.69410 -21.71839 -21.14192 -20.47219 -18.85640 -18.71710 -18.35666 -17.72460 -17.17938 -16.84679 -16.53887 -16.35766 -15.60106 -15.52064 -15.31796 -15.16257 -14.98423 -14.86457 -14.54735 -14.20900 -14.09651 -13.54668 -13.28031 -13.15428 -13.13365 -13.00628 -12.75285 -12.64255 -12.54195 -12.44628 -12.31618 -12.06188 -12.01972 -11.96332 -11.65182 -11.43169 -11.39016 -11.24062 -11.02703 -10.70546 -10.60128 -10.33939 -10.08050 -8.69914 -7.92144 -5.36956 0.40909 1.16593 1.42379 1.44567 1.51963 1.64721 2.00319 2.34000 2.50845 2.67907 3.12146 3.21906 3.45782 3.67676 3.77644 3.82147 3.87313 3.99470 4.03558 4.07268 4.10105 4.15224 4.29798 4.38666 4.47193 4.54682 4.63902 4.67394 4.69581 4.74764 4.77323 4.90755 4.94849 4.98270 5.04941 5.05542 5.07702 5.13370 5.17314 5.21903 5.26398 5.46896 5.48588 5.58844 5.62235 5.77738 6.35384 6.62558 7.11772 7.25622 7.33836 7.82320 8.31072 9.13150 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.003089 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.994408 B = 9063.139230 C =11048.571857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.086 0.914 4 C -0.125 4.125 5 C 0.172 3.828 6 N -0.608 5.608 7 C -0.270 4.270 8 H 0.050 0.950 9 C -0.041 4.041 10 N -0.927 5.927 11 Si 0.961 3.039 12 H -0.282 1.282 13 H -0.285 1.285 14 H -0.278 1.278 15 C 0.145 3.855 16 C 0.151 3.849 17 H 0.050 0.950 18 N -0.699 5.699 19 C 0.509 3.491 20 O -0.588 6.588 21 C -0.049 4.049 22 C -0.011 4.011 23 C -0.223 4.223 24 C 0.039 3.961 25 C -0.102 4.102 26 C -0.143 4.143 27 C -0.173 4.173 28 N -0.394 5.394 29 O 0.087 5.913 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.007 0.993 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.421 0.579 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.189 0.811 44 H 0.134 0.866 45 H 0.097 0.903 46 H 0.131 0.869 47 H 0.122 0.878 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.422 8.878 16.818 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.104 0.896 4 C -0.164 4.164 5 C 0.047 3.953 6 N -0.332 5.332 7 C -0.400 4.400 8 H 0.068 0.932 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.208 1.208 13 H -0.211 1.211 14 H -0.204 1.204 15 C 0.018 3.982 16 C 0.044 3.956 17 H 0.068 0.932 18 N -0.352 5.352 19 C 0.296 3.704 20 O -0.468 6.468 21 C -0.089 4.089 22 C -0.076 4.076 23 C -0.244 4.244 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.181 4.181 27 C -0.211 4.211 28 N -0.100 5.100 29 O 0.022 5.978 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.259 0.741 41 H 0.187 0.813 42 H 0.175 0.825 43 H 0.207 0.793 44 H 0.152 0.848 45 H 0.116 0.884 46 H 0.149 0.851 47 H 0.140 0.860 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.093 7.253 17.087 22.715 hybrid contribution 1.492 -0.524 -0.623 1.699 sum -11.601 6.729 16.464 21.235 Atomic orbital electron populations 1.21784 0.92859 1.01516 1.03143 1.21227 0.96960 0.99474 0.92412 0.89618 1.22097 0.96700 0.99666 0.97982 1.20712 0.90665 0.95463 0.88486 1.44208 1.48185 1.39746 1.01014 1.19331 1.10624 1.03853 1.06176 0.93205 1.25659 0.98104 1.00316 0.99612 1.70149 1.38353 1.30477 1.18273 0.85443 0.78148 0.80217 0.77270 1.20813 1.21057 1.20429 1.21234 0.92986 0.95887 0.88125 1.21204 0.93592 0.96149 0.84691 0.93206 1.45752 1.65257 1.15334 1.08849 1.20999 0.77418 0.86687 0.85330 1.90794 1.51504 1.19132 1.85364 1.20341 1.08471 0.95077 0.85033 1.24151 0.88094 0.96343 0.98964 1.22638 1.02403 1.02204 0.97182 1.23124 0.91242 0.98065 0.99513 1.20266 0.93601 1.03399 0.94756 1.23145 0.91527 0.98621 1.04771 1.23069 1.02756 0.92589 1.02667 1.73757 1.19348 1.15252 1.01619 1.84748 1.38305 1.39803 1.34895 0.90500 0.91059 0.94291 0.89946 0.94023 0.97455 0.92931 0.93812 0.95360 0.95598 0.74096 0.81259 0.82456 0.79328 0.84841 0.88447 0.85131 0.85995 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.02 71.98 0.65 -2.15 16 2 C -0.08 -2.28 2.27 -10.77 -0.02 -2.30 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.12 -4.43 5.36 30.67 0.16 -4.27 16 5 C 0.17 8.13 5.31 86.36 0.46 8.59 16 6 N -0.61 -31.43 2.99 -699.11 -2.09 -33.52 16 7 C -0.27 -15.71 9.59 84.03 0.81 -14.90 16 8 H 0.05 2.98 7.89 -2.91 -0.02 2.96 16 9 C -0.04 -2.34 4.91 84.86 0.42 -1.93 16 10 N -0.93 -54.91 11.19 21.65 0.24 -54.67 16 11 Si 0.96 46.43 29.59 68.60 2.03 48.46 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 C 0.14 6.20 6.09 86.36 0.53 6.72 16 16 C 0.15 4.99 2.06 45.07 0.09 5.08 16 17 H 0.05 2.06 7.58 -2.38 -0.02 2.04 16 18 N -0.70 -15.71 4.37 -442.15 -1.93 -17.64 16 19 C 0.51 12.88 7.79 87.66 0.68 13.56 16 20 O -0.59 -22.85 15.70 -3.05 -0.05 -22.89 16 21 C -0.05 -0.69 6.27 29.10 0.18 -0.50 16 22 C -0.01 -0.26 5.98 25.04 0.15 -0.11 16 23 C -0.22 -5.07 10.40 22.40 0.23 -4.83 16 24 C 0.04 0.99 6.95 43.58 0.30 1.29 16 25 C -0.10 -1.99 6.33 -11.54 -0.07 -2.07 16 26 C -0.14 -2.16 10.04 30.60 0.31 -1.85 16 27 C -0.17 -3.26 10.23 30.60 0.31 -2.94 16 28 N -0.39 -11.85 12.07 -49.56 -0.60 -12.44 16 29 O 0.09 2.45 11.20 71.73 0.80 3.25 16 30 H 0.08 1.17 7.35 -2.39 -0.02 1.15 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.05 2.85 6.04 -2.39 -0.01 2.84 16 37 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 38 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.42 5.42 8.30 -92.71 -0.77 4.65 16 41 H 0.17 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.19 3.31 7.62 -2.91 -0.02 3.29 16 44 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.10 1.54 7.34 -2.39 -0.02 1.52 16 46 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -81.81 391.25 3.79 -78.02 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.20 Total: 14.04 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 5.19 Total: -2.60 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.38 Total: -118.28 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.76 Total: -19.64 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -81.81 3.79 -78.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966629916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.459 kcal (2) G-P(sol) polarization free energy of solvation -81.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds