Wall clock time and date at job start Tue Mar 31 2020 17:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46404 * 2 1 4 4 C 1.53356 * 109.41688 * 240.09847 * 2 1 3 5 5 C 1.53191 * 109.14964 * 178.67719 * 4 2 1 6 6 N 1.46928 * 108.89538 * 54.57649 * 5 4 2 7 7 C 1.36940 * 120.63031 * 126.34245 * 6 5 4 8 8 H 1.07993 * 119.99899 * 332.60187 * 7 6 5 9 9 C 1.38812 * 120.00082 * 152.60947 * 7 6 5 10 10 N 1.31608 * 120.00226 * 159.35551 * 9 7 6 11 11 Si 1.86806 * 119.99740 * 339.35154 * 9 7 6 12 12 H 1.48501 * 109.46946 * 92.92249 * 11 9 7 13 13 H 1.48496 * 109.46962 * 212.92719 * 11 9 7 14 14 H 1.48503 * 109.47163 * 332.92483 * 11 9 7 15 15 C 1.46923 * 118.73774 * 306.32499 * 6 5 4 16 16 C 1.53042 * 109.46119 * 119.97587 * 2 1 3 17 17 H 1.09001 * 109.52419 * 61.41413 * 16 2 1 18 18 N 1.46504 * 109.49462 * 301.33686 * 16 2 1 19 19 C 1.34775 * 120.00261 * 155.16147 * 18 16 2 20 20 O 1.21698 * 119.99456 * 359.97438 * 19 18 16 21 21 C 1.46676 * 120.00465 * 179.97438 * 19 18 16 22 22 C 1.38151 * 126.19254 * 180.02562 * 21 19 18 23 23 C 1.38941 * 106.94914 * 179.97438 * 22 21 19 24 24 C 1.36279 * 108.02152 * 0.03031 * 23 22 21 25 25 N 1.34734 * 108.83501 * 359.68093 * 24 23 22 26 26 H 0.97008 * 125.71520 * 180.32353 * 25 24 23 27 27 C 1.51090 * 122.57815 * 179.88277 * 24 23 22 28 28 C 1.53547 * 107.72093 * 344.10898 * 27 24 23 29 29 O 1.42991 * 109.68885 * 48.02261 * 28 27 24 30 30 C 1.43412 * 114.34183 * 288.97540 * 29 28 27 31 31 H 1.08996 * 109.46845 * 300.02517 * 1 2 3 32 32 H 1.08996 * 109.46880 * 60.02723 * 1 2 3 33 33 H 1.09004 * 109.47156 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.68260 * 58.71566 * 4 2 1 35 35 H 1.08996 * 109.47462 * 298.51276 * 4 2 1 36 36 H 1.09001 * 109.58680 * 294.72224 * 5 4 2 37 37 H 1.08993 * 109.58965 * 174.43801 * 5 4 2 38 38 H 0.97000 * 120.00102 * 179.97438 * 10 9 7 39 39 H 1.09002 * 109.58847 * 173.39167 * 15 6 5 40 40 H 1.08998 * 109.58992 * 293.81447 * 15 6 5 41 41 H 0.96996 * 119.99814 * 335.15662 * 18 16 2 42 42 H 1.07997 * 126.52947 * 359.95878 * 22 21 19 43 43 H 1.08998 * 109.81103 * 224.54861 * 27 24 23 44 44 H 1.09000 * 109.80727 * 103.65857 * 27 24 23 45 45 H 1.09002 * 109.42768 * 287.95852 * 28 27 24 46 46 H 1.09000 * 109.43413 * 168.09849 * 28 27 24 47 47 H 1.09000 * 109.76360 * 291.11101 * 30 29 28 48 48 H 1.08994 * 109.80660 * 170.36722 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2538 5 6 3.5714 -0.6886 -1.2644 6 7 4.0679 -1.2489 -0.0002 7 6 4.9764 -2.2735 -0.0003 8 1 5.0127 -2.9629 -0.8308 9 6 5.8506 -2.4262 1.0671 10 7 6.4274 -3.5890 1.2843 11 14 6.2085 -0.9809 2.1953 12 1 5.2795 -1.0151 3.3533 13 1 7.6090 -1.0672 2.6812 14 1 6.0213 0.2887 1.4479 15 6 3.5714 -0.6888 1.2641 16 6 2.0399 -0.7210 1.2500 17 1 1.6978 -1.7558 1.2386 18 7 1.5256 -0.0490 2.4459 19 6 1.4002 -0.7318 3.6011 20 8 1.7137 -1.9067 3.6506 21 6 0.8858 -0.0590 4.7987 22 6 0.7061 -0.6322 6.0428 23 6 0.2029 0.3588 6.8765 24 6 0.0827 1.5031 6.1463 25 7 0.5001 1.2622 4.8881 26 1 0.5230 1.9089 4.1655 27 6 -0.4398 2.7928 6.7351 28 6 -1.1379 2.4527 8.0598 29 8 -0.2965 1.6027 8.8434 30 6 -0.1677 0.2676 8.3357 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3634 -1.0277 0.0005 34 1 1.6593 -0.2216 -2.1448 35 1 1.6980 -1.7559 -1.2421 36 1 3.9143 0.3410 -1.3673 37 1 3.9437 -1.2829 -2.0987 38 1 7.0385 -3.6955 2.0300 39 1 3.9417 -1.2849 2.0983 40 1 3.9143 0.3406 1.3674 41 1 1.2754 0.8873 2.4064 42 1 0.9164 -1.6559 6.3153 43 1 -1.1523 3.2502 6.0488 44 1 0.3884 3.4770 6.9192 45 1 -2.0783 1.9415 7.8532 46 1 -1.3388 3.3717 8.6103 47 1 -1.1152 -0.2605 8.4431 48 1 0.6130 -0.2615 8.8819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966629972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:21 Heat of formation + Delta-G solvation = -43.060965 kcal Electronic energy + Delta-G solvation = -29529.741802 eV Core-core repulsion = 25584.565377 eV Total energy + Delta-G solvation = -3945.176425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.78713 -41.01783 -39.39924 -38.78118 -36.30338 -34.85004 -33.45903 -33.38630 -32.65290 -31.08830 -29.90532 -29.19440 -26.63301 -25.71157 -24.93792 -24.14977 -23.02557 -22.54846 -21.59132 -20.96644 -20.07127 -19.49909 -18.90821 -17.60849 -17.35524 -17.02431 -16.86229 -16.54429 -16.17539 -15.87866 -15.64076 -15.38029 -15.22065 -15.09778 -14.86727 -14.78496 -14.52624 -14.40574 -14.07206 -13.91988 -13.57685 -13.49864 -13.38563 -13.06961 -12.93743 -12.62540 -12.41325 -12.38960 -12.28329 -11.81589 -11.77615 -11.72495 -11.62122 -11.33985 -11.17643 -10.87633 -10.78419 -10.32440 -9.95560 -9.09953 -8.96836 -8.25271 -5.55773 0.28782 1.21834 1.24853 1.35468 1.46765 1.81016 2.00045 2.22786 2.33527 2.94419 2.98790 3.32377 3.59464 3.65103 3.77035 3.89679 3.95352 3.96283 3.99983 4.15255 4.24934 4.30520 4.35253 4.50414 4.51828 4.62664 4.63520 4.73565 4.75146 4.79651 4.81416 4.84858 4.92093 4.97627 5.00036 5.04688 5.07464 5.11976 5.13480 5.29533 5.36075 5.53307 5.60488 5.69592 5.80786 6.05723 6.21573 6.31791 6.48033 6.84212 7.07827 7.55379 7.94578 8.94652 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003410 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.502372 B = 8208.075170 C = 9394.178242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.094 0.906 4 C -0.119 4.119 5 C 0.136 3.864 6 N -0.616 5.616 7 C -0.248 4.248 8 H 0.058 0.942 9 C -0.033 4.033 10 N -0.954 5.954 11 Si 0.944 3.056 12 H -0.300 1.300 13 H -0.306 1.306 14 H -0.250 1.250 15 C 0.119 3.881 16 C 0.145 3.855 17 H 0.055 0.945 18 N -0.706 5.706 19 C 0.580 3.420 20 O -0.578 6.578 21 C -0.076 4.076 22 C -0.105 4.105 23 C -0.240 4.240 24 C 0.071 3.929 25 N -0.506 5.506 26 H 0.432 0.568 27 C -0.082 4.082 28 C 0.060 3.940 29 O -0.397 6.397 30 C 0.138 3.862 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.260 0.740 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.410 0.590 42 H 0.136 0.864 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.128 0.872 47 H 0.075 0.925 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 20.976 7.945 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.112 0.888 4 C -0.158 4.158 5 C 0.012 3.988 6 N -0.341 5.341 7 C -0.378 4.378 8 H 0.076 0.924 9 C -0.228 4.228 10 N -0.600 5.600 11 Si 0.774 3.226 12 H -0.229 1.229 13 H -0.234 1.234 14 H -0.174 1.174 15 C -0.007 4.007 16 C 0.039 3.961 17 H 0.073 0.927 18 N -0.357 5.357 19 C 0.369 3.631 20 O -0.457 6.457 21 C -0.189 4.189 22 C -0.132 4.132 23 C -0.246 4.246 24 C -0.050 4.050 25 N -0.102 5.102 26 H 0.273 0.727 27 C -0.120 4.120 28 C -0.017 4.017 29 O -0.316 6.316 30 C 0.061 3.939 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.247 0.753 42 H 0.153 0.847 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.146 0.854 47 H 0.093 0.907 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.304 20.211 7.980 30.430 hybrid contribution 0.950 -0.115 0.037 0.958 sum -20.354 20.096 8.017 29.705 Atomic orbital electron populations 1.21775 0.92829 1.01689 1.03030 1.21363 0.97122 0.99807 0.91973 0.88758 1.22056 0.95486 1.00360 0.97896 1.21272 0.93655 0.97139 0.86695 1.44426 1.48133 1.40092 1.01481 1.18893 1.09515 1.03297 1.06047 0.92426 1.25881 0.98178 0.98628 1.00154 1.69952 1.34252 1.23870 1.31885 0.85946 0.75207 0.82629 0.78855 1.22851 1.23442 1.17368 1.21637 0.93952 0.96369 0.88781 1.21427 0.93130 0.96791 0.84765 0.92716 1.45709 1.65949 1.14656 1.09420 1.17465 0.77175 0.85791 0.82641 1.90892 1.52059 1.17930 1.84829 1.20094 1.16925 0.85903 0.95950 1.20973 1.01205 0.99801 0.91179 1.20190 1.11820 0.93968 0.98575 1.20887 1.01843 0.98446 0.83846 1.41471 1.48713 1.08799 1.11265 0.72746 1.21233 1.02143 0.90773 0.97885 1.22843 0.92304 0.95769 0.90773 1.88003 1.70043 1.22569 1.51000 1.21065 1.01503 0.84005 0.87303 0.91835 0.89843 0.94192 0.87632 0.93532 0.93626 0.92325 0.93075 0.94919 0.94546 0.75275 0.84654 0.86237 0.88225 0.91711 0.85436 0.90694 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.02 71.98 0.65 -1.93 16 2 C -0.08 -2.11 2.27 -10.66 -0.02 -2.13 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.32 5.39 30.78 0.17 -3.15 16 5 C 0.14 4.99 6.50 86.36 0.56 5.55 16 6 N -0.62 -30.01 2.77 -699.12 -1.94 -31.94 16 7 C -0.25 -14.84 10.03 84.03 0.84 -13.99 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 C -0.03 -2.10 5.23 84.86 0.44 -1.66 16 10 N -0.95 -64.24 13.97 21.65 0.30 -63.94 16 11 Si 0.94 51.09 24.35 68.60 1.67 52.76 16 12 H -0.30 -16.77 6.62 99.48 0.66 -16.11 16 13 H -0.31 -16.50 7.11 99.48 0.71 -15.79 16 14 H -0.25 -12.36 6.64 99.48 0.66 -11.70 16 15 C 0.12 5.42 3.78 86.36 0.33 5.74 16 16 C 0.15 5.20 2.07 45.07 0.09 5.29 16 17 H 0.05 2.42 7.58 -2.39 -0.02 2.40 16 18 N -0.71 -20.71 4.37 -446.12 -1.95 -22.65 16 19 C 0.58 20.98 7.75 86.45 0.67 21.65 16 20 O -0.58 -27.99 16.55 -4.34 -0.07 -28.06 16 21 C -0.08 -2.19 7.06 40.37 0.29 -1.90 16 22 C -0.10 -3.05 10.63 22.42 0.24 -2.81 16 23 C -0.24 -5.40 6.02 -20.11 -0.12 -5.52 16 24 C 0.07 1.25 7.14 41.78 0.30 1.54 16 25 N -0.51 -9.24 5.97 -171.11 -1.02 -10.26 16 26 H 0.43 4.53 8.19 -92.70 -0.76 3.77 16 27 C -0.08 -0.73 6.56 30.16 0.20 -0.53 16 28 C 0.06 0.57 6.78 72.17 0.49 1.06 16 29 O -0.40 -6.91 10.74 -148.98 -1.60 -8.51 16 30 C 0.14 2.52 7.25 71.28 0.52 3.04 16 31 H 0.06 1.01 7.35 -2.39 -0.02 0.99 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 38 H 0.26 16.77 8.31 -92.71 -0.77 16.00 16 39 H 0.03 1.81 4.50 -2.39 -0.01 1.80 16 40 H 0.04 1.55 7.07 -2.39 -0.02 1.53 16 41 H 0.41 7.86 7.43 -92.71 -0.69 7.17 16 42 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 43 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 0.53 8.09 -2.39 -0.02 0.51 16 46 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -88.64 374.71 0.47 -88.17 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.56 Total: 14.20 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.63 Total: 10.25 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -4.61 Total: -128.80 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.67 Total: -36.58 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.67 Total: 52.76 kcal Total: -88.64 0.47 -88.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966629972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.111 kcal (2) G-P(sol) polarization free energy of solvation -88.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds